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    13 repositories

    • banis

      Public
      BANIS: Baseline for Affinity-based Neuron Instance Segmentation
      Python
      •
      MIT License
      •1•3•0•1•Updated Dec 11, 2024Dec 11, 2024

    • beach_collection

      Public
      Python
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • nisb

      Public
      HTML
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • SyConn

      Public
      Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
      image-processingimage-analysisconnectomicssemantic-segmentationconnectivity-matrixmorphology-analysis
      Python
      •
      GNU General Public License v2.0
      •9•40•2•3•Updated Jul 1, 2024Jul 1, 2024

    • autodoc

      Public
      This is a repository for automatic generation of docstrings
      Python
      •
      MIT License
      •1•8•3•0•Updated Jan 29, 2024Jan 29, 2024

    • DeepFocus

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • SyConn2Scripts

      Public
      Python
      •0•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • SyConn-Neuroglancer

      Public
      Adaptation of the WebGL-based volumetric viewer https://github.com/google/neuroglancer. Provides an analysis interface for filtering neurons based on properties, the identification of pre- and postsynaptic neurons or the listing of different cell types
      typescriptpython3webgl
      TypeScript
      •
      Apache License 2.0
      •0•1•1•0•Updated May 4, 2023May 4, 2023

    • emcaps

      Public
      Code for the paper "Genetically encoded barcodes for correlative volume electron microscopy"
      Python
      •
      MIT License
      •1•0•1•0•Updated May 1, 2023May 1, 2023

    • MorphX

      Public
      Toolkit for exploration and segmentation of 3D morphologies.
      Python
      •
      GNU General Public License v2.0
      •1•3•0•0•Updated May 28, 2022May 28, 2022

    • kimimaro

      Public
      Skeletonize densely labeled 3D image segmentations.
      Python
      •
      GNU General Public License v3.0
      •23•1•0•0•Updated Nov 8, 2021Nov 8, 2021

    • LightConvPoint

      Public
      Python
      •
      Other
      •15•1•0•0•Updated Nov 5, 2021Nov 5, 2021

    • NeuronX

      Public
      Application of Morphx to neurons
      Python
      •1•0•0•0•Updated Mar 28, 2021Mar 28, 2021