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Update project yaml to contain only the remaining script actions
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project.yaml

Lines changed: 2 additions & 51 deletions
Original file line numberDiff line numberDiff line change
@@ -5,38 +5,15 @@ expectations:
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population_size: 1000
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actions:
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generate_dm_reg_atamborska:
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run: ehrql:v1
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generate-dataset analysis/dm_reg_dataset_atamborska.py
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--output output/dm/dm_reg_atamborska.csv.gz
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outputs:
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highly_sensitive:
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dataset: output/dm/dm_reg_atamborska.csv.gz
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generate_registry_dm_jaidip:
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run: ehrql:v1 generate-dataset analysis/dm_reg_dataset_jaidip_gill.py --output output/dm/registry_dm_jaidip.csv.gz
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outputs:
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highly_sensitive:
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dataset: output/dm/registry_dm_jaidip.csv.gz
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generate_hyp_reg_dataset:
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run: >
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ehrql:v1
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generate-dataset analysis/hyp_reg_dataset.py
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--test-data-file analysis/test_hyp_reg_dataset.py
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--output output/hyp/hyp001_viveck.csv.gz
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--output output/hyp/hyp001.csv.gz
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outputs:
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highly_sensitive:
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cohort: output/hyp/hyp001_viveck.csv.gz
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generate_dm_reg_dataset_viveck:
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run: >
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ehrql:v1
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generate-dataset analysis/dm_reg_dataset_viveck.py
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--output output/dm/dm017_viveck.csv.gz
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outputs:
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highly_sensitive:
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cohort: output/dm/dm017_viveck.csv.gz
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cohort: output/hyp/hyp001.csv.gz
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generate_dm_reg_dataset_milan:
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run: >
@@ -48,32 +25,6 @@ actions:
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highly_sensitive:
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cohort: output/dm/dm017_milan.csv.gz
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generate_dem_reg_measures:
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run: >
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ehrql:v1
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generate-measures analysis/dem_reg_measures.py
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--output output/dem/dem_reg_measures.csv
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outputs:
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moderately_sensitive:
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dem_reg_measures: output/dem/dem_reg_measures.csv
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visualise_dem_rates:
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run: >
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r:latest
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analysis/dem_reg_plots.R
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--output output/dem/dem_reg_rates.png
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--output output/dem/dem_reg_rates_imd.png
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needs: [generate_dem_reg_measures]
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outputs:
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moderately_sensitive:
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dem_reg_rates_unstratified: output/dem/dem_reg_rates.png
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dem_reg_rates_imd: output/dem/dem_reg_rates_imd.png
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generate_dep_reg_measures_jaidip:
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run: ehrql:v1 generate-measures analysis/dep_reg_measures_jaidip.py --output output/dep/dep_jaidip.csv.gz
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outputs:
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highly_sensitive:
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measure: output/dep/dep_jaidip.csv.gz
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generate_dep_reg_dataset:
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run: ehrql:v1 generate-dataset analysis/dep_reg_dataset.py --output output/dep/dep_reg_dataset.csv.gz
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outputs:

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