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Daniel Incicau
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Try something
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.github/workflows/benchmark.yml

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@@ -25,8 +25,7 @@ jobs:
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with:
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path: |
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~/.cache/pip
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~/.conda
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/opt/conda
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~/.miniconda3
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key: cache-${{ runner.os }}-${{ hashFiles('requirements.txt') }}
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- name: Install Mambaforge
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- name: Run benchmark
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shell: bash -l {0}
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run: |
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pwd
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ls -lah
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echo "y" | ob run benchmark -b Clustering.yaml --local --threads 20 --continue-on-error
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upload-artifact:

Clustering.yaml

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@@ -33,13 +33,15 @@ metric_collectors:
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name: "Biologically-relevant performance metrics gathering and postprocessing."
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software_environment: "R"
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repository:
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url: https://github.com/imallona/clustering_report.git
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commit: 73e8e49
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url: https://github.com/omnibenchmark-example/metric-collector.git
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commit: 458ab11
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inputs:
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- metrics.scores
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outputs:
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- id: report.html
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path: "{input}/{name}/plotting_report.html"
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- id: biometrics.report.html
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path: "{input}/{name}/biometrics_report.html"
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- id: biometrics.tsv
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path: "{input}/{name}/biometrics.tsv"
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stages:
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## clustbench data ##########################################################

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