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Update FCPS apptainer recipe and switch to the matching ORAS'; minor changes related to the action
That is, using run_omnibenchmark@dev this time without the local env (untested)
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.github/workflows/run_conda.yml

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@@ -15,7 +15,7 @@ jobs:
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uses: actions/checkout@v4
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- name: Use action
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uses: omnibenchmark/run_omnibenchmark@main
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uses: omnibenchmark/run_omnibenchmark@dev
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with:
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yaml: Clustering_conda.yml
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backend: conda

Clustering_oras.yml

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fcps:
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description: "CRAN's FCPS"
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conda: envs/fcps.yml
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# apptainer: oras://registry.renkulab.io/izaskun.mallona/clustering_example/fcps:latest
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apptainer: oras://quay.io/omnibenchmark/fcps:0.1.2
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apptainer: oras://registry.renkulab.io/izaskun.mallona/clustering_example/fcps:latest
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## apptainer: oras://quay.io/omnibenchmark/fcps:0.1.2
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envmodule: fcps
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metric_collectors:
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- id: plotting

env/omnibenchmark_conda.yaml

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envs/fcps_singularity.def

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python3.12 -m venv "default"
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. default/bin/activate
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pip install gitpython==3.1.43 isodate "pydantic-core>=2.35.1"
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pip install gitpython==3.1.43 isodate "pydantic-core==2.34.1"
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## no versioning here - fcps deps
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Rscript -e 'BiocManager::install(c("kernlab", "cclust", "dbscan", "kohonen", "MCL", "ADPclust", "cluster", "DatabionicSwarm", "orclus", "subspace", "flexclust", "ABCanalysis", "apcluster", "pracma", "EMCluster", "pdfCluster", "parallelDist", "plotly", "ProjectionBasedClustering", "GeneralizedUmatrix", "mstknnclust", "densityClust", "parallel", "energy", "R.utils", "tclust", "Spectrum", "genie", "protoclust", "fastcluster", "clusterability", "signal", "reshape2", "PPCI", "clustrd", "smacof", "rgl", "prclust", "dendextend", "moments", "prabclus", "VarSelLCM", "sparcl", "mixtools", "HDclassif", "clustvarsel", "knitr", "rmarkdown", "R.utils", "FCPS"))'

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