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Map 288 clinical measurement related traits to OBA #300

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3 tasks done
rays22 opened this issue Oct 30, 2023 · 2 comments · Fixed by #303
Closed
3 tasks done

Map 288 clinical measurement related traits to OBA #300

rays22 opened this issue Oct 30, 2023 · 2 comments · Fixed by #303
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Clinical laboratory measurement traits Logical Observation Identifiers Names and Codes related traits

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rays22 commented Oct 30, 2023 •
edited by matentzn
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  • Check which clinical measurement from the table below are in scope to OBA and map them to existing OBA traits
  • Add new OBA traits as needed for LOINC/lab code mapping
  • Create an SSSOM mapping table with the LOINC/lab to OBA trait mappings
@rays22 rays22 added the Clinical laboratory measurement traits Logical Observation Identifiers Names and Codes related traits label Oct 30, 2023
@rays22 rays22 self-assigned this Oct 30, 2023
@rays22 rays22 moved this to In Progress in @rays22's triage and progress Oct 30, 2023
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rays22 commented Nov 1, 2023

Related issue: #301 .

@rays22 rays22 mentioned this issue Nov 1, 2023
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rays22 commented Nov 16, 2023

The draft mapping table is here.

rays22 added a commit that referenced this issue Nov 16, 2023
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Add LOINC related traits
576f45e 
Resolve #300
@rays22 rays22 mentioned this issue Nov 16, 2023
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rays22 added a commit that referenced this issue Nov 17, 2023
@rays22
Fix duplicate class
4021e20 
Resolve #300
rays22 added a commit to obophenotype/chebi_obo_slim that referenced this issue Nov 17, 2023
@rays22
Add CHEBI:60579 calcium oxalate for OBA
0bd0444 
Addresses obophenotype/bio-attribute-ontology#300 and obophenotype/bio-attribute-ontology#300
@rays22 rays22 mentioned this issue Nov 17, 2023
Merged
rays22 added a commit to obophenotype/chebi_obo_slim that referenced this issue Nov 17, 2023
@rays22
Add v2023-11-17 release artefacts
3688811 
Addresses obophenotype/bio-attribute-ontology#300 and obophenotype/bio-attribute-ontology#300
@rays22 rays22 mentioned this issue Nov 17, 2023
Merged
@rays22 rays22 changed the title Map 288 trait related LOINC codes to OBA Map 288 clinical measurement related traits to OBA Nov 17, 2023
@github-project-automation github-project-automation bot moved this from In Progress to Done in @rays22's triage and progress Dec 5, 2023
@rays22 rays22 mentioned this issue Mar 8, 2024
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Clinical laboratory measurement traits Logical Observation Identifiers Names and Codes related traits
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Add clinical measurement related traits obophenotype/bio-attribute-ontology
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