diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 7cfcffa4..7db82ce6 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-10-26") + +Annotation(owl:versionInfo "2023-11-17") Declaration(Class()) Declaration(Class()) @@ -71,6 +71,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -350,6 +351,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1053,6 +1055,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1951,6 +1954,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2175,6 +2179,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2407,6 +2412,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7736,6 +7742,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9127,6 +9135,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9711,7 +9722,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10806,6 +10816,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10849,6 +10860,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -17630,6 +17642,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24419,6 +24432,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24426,6 +24440,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24699,6 +24714,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -24851,6 +24868,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -49542,6 +49560,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -50105,13 +50124,13 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty(rdfs:comment)) Declaration(AnnotationProperty(rdfs:label)) +Declaration(AnnotationProperty(rdfs:seeAlso)) Declaration(AnnotationProperty(owl:deprecated)) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -50209,6 +50228,10 @@ AnnotationAssertion(rdfs:label "is a AnnotationAssertion( "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.") AnnotationAssertion(rdfs:label "is a defining property chain axiom where second argument is reflexive") +# Annotation Property: rdfs:seeAlso (seeAlso) + +AnnotationAssertion(rdfs:label rdfs:seeAlso "seeAlso") + ############################ # Object Properties @@ -50376,7 +50399,7 @@ SubObjectPropertyOf( "disease has primary infectious agent") SubObjectPropertyOf( ) -# Object Property: (inheres in) +# Object Property: (characteristic of) AnnotationAssertion( "inheres in"@en) AnnotationAssertion( "this fragility is a characteristic of this vase"@en) @@ -53988,6 +54011,13 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (oxalate) + +AnnotationAssertion( "A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of oxalic acid.") +AnnotationAssertion(rdfs:label "oxalate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (5-ammoniolevulinic acid) AnnotationAssertion( "A primary ammonium ion obtained by protonation of the amino group of 5-aminolevulinic acid.") @@ -57752,6 +57782,24 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (oxalic acid) + +AnnotationAssertion( "An alpha,omega-dicarboxylic acid that is ethane substituted by carboxyl groups at positions 1 and 2.") +AnnotationAssertion( "0") +AnnotationAssertion( "C2H2O4") +AnnotationAssertion( "InChI=1S/C2H2O4/c3-1(4)2(5)6/h(H,3,4)(H,5,6)") +AnnotationAssertion( "MUBZPKHOEPUJKR-UHFFFAOYSA-N") +AnnotationAssertion( "90.03490") +AnnotationAssertion( "89.99531") +AnnotationAssertion( "OC(=O)C(O)=O") +AnnotationAssertion(rdfs:label "oxalic acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (D-phenylalanine) AnnotationAssertion( "The D-enantiomer of phenylalanine.") @@ -64844,6 +64892,23 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (oxalate(2-)) + +AnnotationAssertion( "A dicarboxylic acid dianion obtained by deprotonation of both carboxy groups of oxalic acid.") +AnnotationAssertion( "-2") +AnnotationAssertion( "C2O4") +AnnotationAssertion( "InChI=1S/C2H2O4/c3-1(4)2(5)6/h(H,3,4)(H,5,6)/p-2") +AnnotationAssertion( "MUBZPKHOEPUJKR-UHFFFAOYSA-L") +AnnotationAssertion( "88.01900") +AnnotationAssertion( "87.98076") +AnnotationAssertion( "[O-]C(=O)C([O-])=O") +AnnotationAssertion(rdfs:label "oxalate(2-)") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (D-thyroxine) AnnotationAssertion( "The D-enantiomer of thyroxine.") @@ -73170,6 +73235,24 @@ AnnotationAssertion( "carboxy group") SubClassOf( ) +# Class: (oxalate(1-)) + +AnnotationAssertion( "A dicarboxylic acid monoanion that is the conjugate base of oxalic acid.") +AnnotationAssertion( "-1") +AnnotationAssertion( "C2HO4") +AnnotationAssertion( "InChI=1S/C2H2O4/c3-1(4)2(5)6/h(H,3,4)(H,5,6)/p-1") +AnnotationAssertion( "MUBZPKHOEPUJKR-UHFFFAOYSA-M") +AnnotationAssertion( "89.02694") +AnnotationAssertion( "88.98803") +AnnotationAssertion( "OC(=O)C([O-])=O") +AnnotationAssertion(rdfs:label "oxalate(1-)") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (L-ornithinium(1+)) AnnotationAssertion( "A polar amino acid zwitterion of L-ornithine.") @@ -75021,6 +75104,12 @@ AnnotationAssertion( "macrocycle") SubClassOf( ) +# Class: (organic calcium salt) + +AnnotationAssertion(rdfs:label "organic calcium salt") +SubClassOf( ) +SubClassOf( ) + # Class: (dopamine uptake inhibitor) AnnotationAssertion( "A dopaminergic agent that blocks the transport of dopamine into axon terminals or into storage vesicles within terminals. Most of the adrenergic uptake inhibitors also inhibit dopamine uptake.") @@ -77222,6 +77311,20 @@ AnnotationAssertion(rdfs:label "lys SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (calcium oxalate) + +AnnotationAssertion( "The calcium salt of oxalic acid, which in excess in the urine may lead to formation of oxalate calculi (kidney stones).") +AnnotationAssertion( "0") +AnnotationAssertion( "C2CaO4") +AnnotationAssertion( "InChI=1S/C2H2O4.Ca/c3-1(4)2(5)6;/h(H,3,4)(H,5,6);/q;+2/p-2") +AnnotationAssertion( "QXDMQSPYEZFLGF-UHFFFAOYSA-L") +AnnotationAssertion( "128.09700") +AnnotationAssertion( "127.94225") +AnnotationAssertion( "[Ca++].[O-]C(=O)C([O-])=O") +AnnotationAssertion(rdfs:label "calcium oxalate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (opioid agent) AnnotationAssertion( "Any agent that acts on an opioid receptor or affects the life cycle of an opioid transmitter.") @@ -119366,6 +119469,21 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) +# Class: (oxalate transmembrane transporter activity) + +AnnotationAssertion(rdfs:label "oxalate transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxalate transport) + +AnnotationAssertion(rdfs:label "oxalate transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + # Class: (protein metabolic process) AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/23112"^^xsd:anyURI) @@ -129778,6 +129896,27 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (oxalate metabolic process) + +AnnotationAssertion(rdfs:label "oxalate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + +# Class: (oxalate biosynthetic process) + +AnnotationAssertion(rdfs:label "oxalate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + +# Class: (oxalate catabolic process) + +AnnotationAssertion(rdfs:label "oxalate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + # Class: (chloroplast proton-transporting ATP synthase complex assembly) AnnotationAssertion(rdfs:label "chloroplast proton-transporting ATP synthase complex assembly") @@ -133960,13 +134099,6 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (obsolete neurotransmitter metabolic process) - -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/25736"^^xsd:anyURI) -AnnotationAssertion(rdfs:comment "The reason for obsoletion is that 'neurotransmitter' is unnecessary grouping in the metabolism branch of the ontology, and it creates true path violations.") -AnnotationAssertion(rdfs:label "obsolete neurotransmitter metabolic process") -AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) - # Class: (retrograde transport, endosome to Golgi) AnnotationAssertion(rdfs:label "retrograde transport, endosome to Golgi") @@ -142358,6 +142490,13 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) +# Class: (oxalic acid secretion) + +AnnotationAssertion(rdfs:label "oxalic acid secretion") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + # Class: (microtubule polymerization) AnnotationAssertion(rdfs:label "microtubule polymerization") @@ -142689,6 +142828,12 @@ SubClassOf( ObjectSomeValuesFrom( "secretion") SubClassOf( ) +# Class: (calcium oxalate binding) + +AnnotationAssertion(rdfs:label "calcium oxalate binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + # Class: (tetrapyrrole binding) AnnotationAssertion(rdfs:label "tetrapyrrole binding") @@ -193852,6 +193997,12 @@ AnnotationAssertion(rdfs:label "Elev EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) SubClassOf( ) +# Class: (Hyperoxaluria) + +AnnotationAssertion(rdfs:label "Hyperoxaluria") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) +SubClassOf( ) + # Class: (Elevated urinary delta-aminolevulinic acid) AnnotationAssertion(rdfs:comment "Delta-aminolevulinic acid synthesis is a rate-controlling step in heme synthesis.") @@ -247846,6 +247997,11 @@ SubClassOf( "speed") SubClassOf( ) +# Class: (age) + +AnnotationAssertion(rdfs:label "age") +SubClassOf( ) + # Class: (color) AnnotationAssertion(rdfs:label "color") @@ -247885,6 +248041,11 @@ SubClassOf( "concentration of") SubClassOf( ) +# Class: (consistency) + +AnnotationAssertion(rdfs:label "consistency") +SubClassOf( ) + # Class: (direction) AnnotationAssertion(rdfs:comment "TODO: consider merging with angular placement.") @@ -249516,6 +249677,22 @@ SubClassOf( "nerve conductivity") SubClassOf( ) +# Class: (increased age) + +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "increased age") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + +# Class: (decreased age) + +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "decreased age") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + # Class: (increased flexibility) AnnotationAssertion( ) @@ -250448,6 +250625,14 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ) +# Class: (normal age) + +AnnotationAssertion( "An age which is relatively normal or average.") +AnnotationAssertion(rdfs:label "normal age") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + # Class: (normal cellular motility) AnnotationAssertion( "A cellular motility which is normal or average.") @@ -397312,6 +397497,7 @@ DisjointClasses( ) AnnotationAssertion( "cervical") AnnotationAssertion(rdfs:label "uterine cervix") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -397334,7 +397520,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "the structure of the nose varies across vertebrates. In tetrapods the nose is part of the respiratory system.[PMID:25312359]") AnnotationAssertion(rdfs:label "nose") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d0/Canine-nose.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d0/Canine-nose.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -397361,7 +397547,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "islet of Langerhans") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -397375,7 +397561,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The lamprey possesses a distinct pituitary organ and hormones, the ascidian does not show distinct evidence of them [Sower S, Freamat M, Kavanaugh S. The origins of the vertebrate hypothalamic-pituitary-gonadal (HPG) and hypothalamic-pituitary-thyroid (HPT) endocrine systems: new insights from lampreys. Gen Comp Endocrinol 2009;161:20-9]") AnnotationAssertion(rdfs:comment "Terminology note: hypophysis and pituitary gland are often used informally as synonyms, but the hypophysis also includes the small infundibular or pituitary stalk[Neumann 2020]") AnnotationAssertion(rdfs:label "pituitary gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -397394,8 +397580,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "submucosal") AnnotationAssertion(rdfs:label "submucosa") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397405,14 +397591,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peripheral nervous system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (parasympathetic nervous system) AnnotationAssertion(rdfs:label "parasympathetic nervous system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -397430,7 +397616,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "has developmental contribution from NC in verteberates (https://github.com/obophenotype/uberon/wiki/The-neural-crest)") AnnotationAssertion(rdfs:label "sympathetic nervous system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397440,8 +397626,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Note the distinction between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee") AnnotationAssertion( "we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive") AnnotationAssertion(rdfs:label "zone of skin") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -397517,7 +397703,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sense organ) AnnotationAssertion(rdfs:label "sense organ") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -397539,7 +397725,7 @@ AnnotationAssertion( "The beta-keratins in feathers, beaks and claws - and the claws, scales and shells of reptiles - are composed of protein strands hydrogen-bonded into beta-pleated sheets, which are then further twisted and crosslinked by disulfide bridges into structures even tougher than the alpha-keratins of mammalian hair, horns and hoof.") AnnotationAssertion(rdfs:label "feather") AnnotationAssertion(rdfs:seeAlso "http://xkcd.com/1104/"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/41/Parts_of_feather_modified.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/41/Parts_of_feather_modified.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -397616,7 +397802,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymph node") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/650"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -397633,7 +397819,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lamina propria) AnnotationAssertion(rdfs:label "lamina propria") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fb/GI_Organization.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fb/GI_Organization.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397661,6 +397847,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "primary ovarian follicle") EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(1 ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397671,6 +397858,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "secondary ovarian follicle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectMinCardinality(2 ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397679,8 +397867,9 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tertiary ovarian follicle) AnnotationAssertion(rdfs:label "tertiary ovarian follicle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectMinCardinality(2 ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397692,8 +397881,7 @@ AnnotationAssertion( "Generally, larger species such as ovine, equine, porcine, human, and bovine have larger follicles, with the fluid comprising a substantial proportion of the volume of the follicles at ovulation (estimated at >95% in bovine [3]). Smaller species such as rats and mice have smaller follicles with fractionally less follicular fluid[20164441]") AnnotationAssertion( "The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes and is rich in hyaluronic acid.") AnnotationAssertion(rdfs:label "follicular fluid") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png"^^xsd:anyURI) -SubClassOf( ) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397714,8 +397902,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (serous membrane) AnnotationAssertion(rdfs:label "serous membrane") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -397728,7 +397916,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tendon) AnnotationAssertion(rdfs:label "tendon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397742,7 +397930,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The sensory ganglia of spinal nerves arise only from the neural crest, whereas many sensory ganglia of the 'dorsal' cranial nerves arise from epibranchial placodes as well as the neural crest[DOI:10.1093/icb/icn065]") AnnotationAssertion(rdfs:label "dorsal root ganglion") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/2644") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/71/DRG_Chicken_e7.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/71/DRG_Chicken_e7.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -397770,7 +397958,9 @@ SubClassOf( ) AnnotationAssertion(rdfs:label "fornix of brain") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -397780,7 +397970,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (macula lutea) AnnotationAssertion(rdfs:label "macula lutea") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -397810,7 +398000,7 @@ AnnotationAssertion( "ureteric") AnnotationAssertion( "in humans, consists of adventitial, muscular and mucoa layers") AnnotationAssertion(rdfs:label "ureter") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -397829,7 +398019,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "urethral") AnnotationAssertion( "In human males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening.") AnnotationAssertion(rdfs:label "urethra") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -397856,6 +398046,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "large intestine") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -397981,8 +398174,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal glomerulus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398004,7 +398197,7 @@ AnnotationAssertion( ) AnnotationAssertion( "(or external ectoderm) forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis") AnnotationAssertion(rdfs:label "external ectoderm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1d/Ectoderm.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1d/Ectoderm.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398034,6 +398227,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (male reproductive system) AnnotationAssertion(rdfs:label "male reproductive system") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398045,7 +398239,7 @@ AnnotationAssertion( "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In fish and amphibians, the mesonephros will form the mature kidney") AnnotationAssertion( "By contrast to the pronephros, the histological features of the mammalian mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP, modified]") AnnotationAssertion(rdfs:label "mesonephros") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray986.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray986.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398087,7 +398281,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (morula) AnnotationAssertion(rdfs:label "morula") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398099,8 +398293,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "zona pellucida") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png"^^xsd:anyURI) -SubClassOf( ) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398111,7 +398304,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred.The ICM lies within the blastocyst cavity and is entirely surrounded by the single layer of cells called trophoblast. [Wikipedia:Inner_cell_mass]") AnnotationAssertion(rdfs:label "inner cell mass") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398124,7 +398317,7 @@ AnnotationAssertion( "trophoblastic") AnnotationAssertion(rdfs:comment "Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg. [Wikipedia:Trophoblast]") AnnotationAssertion(rdfs:label "trophoblast") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398136,7 +398329,7 @@ AnnotationAssertion( "this term groups together disparate structures with different relationships.") AnnotationAssertion(rdfs:label "hypoblast (generic)") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/437"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398144,14 +398337,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "blastocele") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/475"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Blastocyst.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Blastocyst.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (bilaminar disc) AnnotationAssertion(rdfs:label "bilaminar disc") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398245,7 +398438,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider adding a preceding stage 'morula stage' as part of cleavage") AnnotationAssertion(rdfs:label "blastula stage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398345,7 +398538,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "clarify successors - include bronchi?") AnnotationAssertion(rdfs:label "lung bud") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/71/Gray948.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/71/Gray948.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398371,7 +398564,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "perineurial") AnnotationAssertion(rdfs:label "perineurium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398400,7 +398593,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (epineurium) AnnotationAssertion(rdfs:label "epineurium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398417,7 +398610,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cranial nerve nucleus) AnnotationAssertion(rdfs:label "cranial nerve nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398439,7 +398632,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (olivary body) AnnotationAssertion(rdfs:label "olivary body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398493,7 +398686,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "theca externa") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Mature_Graffian_follicle.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Mature_Graffian_follicle.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -398524,7 +398717,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "requires alignment with EHDAA2 and complete developmental relationships") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anal canal") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398573,7 +398766,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (primitive urogenital sinus) AnnotationAssertion(rdfs:label "primitive urogenital sinus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398587,7 +398780,7 @@ AnnotationAssertion( "some AOs place this as developing from the stomodeum but we weaken this to developmental contribution, as the mouth includes non-ectodermal derivatives") AnnotationAssertion(rdfs:label "mouth") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/661"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/06/Mouth_illustration-Otis_Archives.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/06/Mouth_illustration-Otis_Archives.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398735,8 +398928,8 @@ AnnotationAssertion( "fused in humans, paired in other animals") AnnotationAssertion( "In the mouse the parietal originates from cephalic paraxial mesoderm (Jiang 2000; Morriss-Kay 2001), whereas in the chicken it is traced back to either mesodermal (Noden 1978) or neural crest (Couly 1992, 1993).") AnnotationAssertion(rdfs:label "tetrapod frontal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray136.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5b/Frontal_bone.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray136.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5b/Frontal_bone.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -398749,7 +398942,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tetrapod parietal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray132.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray132.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -398761,7 +398954,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this groups both skeletal and non-skeletal ligaments. What is called a 'ligament' in many AOs is actually a skeletal ligament") AnnotationAssertion(rdfs:label "ligament") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -398784,7 +398977,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (atlanto-occipital joint) AnnotationAssertion(rdfs:label "atlanto-occipital joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -398797,7 +398990,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (amniotic cavity) AnnotationAssertion(rdfs:label "amniotic cavity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398824,7 +399017,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "amniotic") AnnotationAssertion(rdfs:label "amnion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -398840,7 +399034,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula") AnnotationAssertion(rdfs:label "blastula") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398855,7 +399049,7 @@ SubClassOf( (breast) AnnotationAssertion(rdfs:label "breast") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Closeup_of_female_breast.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Closeup_of_female_breast.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398887,8 +399081,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (subarachnoid space) AnnotationAssertion(rdfs:label "subarachnoid space") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray769.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray769.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398979,7 +399173,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "gular") AnnotationAssertion( "The hyoid bone and the clavicle are the only bones located in the throat of mammals.") AnnotationAssertion(rdfs:label "throat") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/16/Throat_Diagram.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/16/Throat_Diagram.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -398988,8 +399182,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "mucosal") AnnotationAssertion(rdfs:label "mucosa") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399029,7 +399223,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "obsoletion proposes. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity.") AnnotationAssertion(rdfs:comment "includes the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]") AnnotationAssertion(rdfs:label "limbic system") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5c/Brain_limbicsystem.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5c/Brain_limbicsystem.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399072,7 +399266,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Gilbert fig11.32 has blastocyst has giving rise to ICM and trophoblast (which in this source is a synonym for trophectoderm)") AnnotationAssertion(rdfs:label "blastocyst") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399106,7 +399300,11 @@ AnnotationAssertion( "The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water") AnnotationAssertion(rdfs:comment "Note that 'renal medulla' is not synonymous with 'medullary region of kidney'. The former is composed of kidney pyramids only, while the latter covers kidney pyramids and renal columns, which are histologically different.") AnnotationAssertion(rdfs:label "renal medulla") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399118,7 +399316,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "urothelial") AnnotationAssertion(rdfs:label "urothelium") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399135,14 +399333,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2]") AnnotationAssertion(rdfs:comment "* According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum") AnnotationAssertion(rdfs:label "corpus striatum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray656.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray656.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (syncytiotrophoblast) AnnotationAssertion(rdfs:label "syncytiotrophoblast") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399152,15 +399350,16 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mandibular nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (hindlimb stylopod) +AnnotationAssertion(Annotation(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/61") "Naming conventions for pod terms under discussion within phenoscape group.") AnnotationAssertion(rdfs:label "hindlimb stylopod") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4b/Gray1238.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4b/Gray1238.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -399173,7 +399372,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "maxillary nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399181,7 +399380,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tongue muscle) AnnotationAssertion(rdfs:label "tongue muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray1019.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray1019.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) EquivalentClasses( ObjectUnionOf( )) SubClassOf( ) @@ -399203,7 +399402,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "urinary bladder detrusor smooth muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399242,7 +399441,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( ) AnnotationAssertion( "epiglottal") AnnotationAssertion(rdfs:label "epiglottis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray958.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray958.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399286,7 +399485,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (longissimus muscle) AnnotationAssertion(rdfs:label "longissimus muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399297,7 +399496,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "in BTO this is part of the cochlear modiolus, but this leads to the CG being in both the nervous and skeletal systems") AnnotationAssertion(rdfs:label "cochlear ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray903.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray903.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -399309,7 +399508,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vallate papilla) AnnotationAssertion(rdfs:label "vallate papilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1015.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1015.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399351,7 +399550,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mandibular ramus) AnnotationAssertion(rdfs:label "mandibular ramus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399360,15 +399559,15 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (nasal vestibule) AnnotationAssertion(rdfs:label "nasal vestibule") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (scalp) AnnotationAssertion(rdfs:label "scalp") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Layers_of_the_scalp_and_meninges.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/eb/Double_cowlick.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Layers_of_the_scalp_and_meninges.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/eb/Double_cowlick.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399381,7 +399580,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sympathetic trunk) AnnotationAssertion(rdfs:label "sympathetic trunk") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399390,7 +399589,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (serous gland) AnnotationAssertion(rdfs:label "serous gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399409,7 +399608,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "The visual cortex is made up of Brodmann area 17 (the primary visual cortex), and Brodmann area 18 and Brodmann area 19, the extrastriate cortical areas, in humans.") AnnotationAssertion(rdfs:label "visual cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399421,7 +399620,7 @@ AnnotationAssertion( "In humans, at the surface of the skin in hands and feet, they appear as epidermal or papillary ridges (colloquially known as fingerprints)") AnnotationAssertion( "Blood vessels in the dermal papillae nourish all hair follicles and bring nutrients and oxygen to the lower layers of epidermal cells.") AnnotationAssertion(rdfs:label "dermal papilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/34/Skin.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/34/Skin.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399430,7 +399629,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mucous gland) AnnotationAssertion(rdfs:label "mucous gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399536,7 +399735,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check MA") AnnotationAssertion(rdfs:label "prefrontal cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/59/Gray726-Brodman-prefrontal.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/59/Gray726-Brodman-prefrontal.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399679,7 +399878,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "testicular") AnnotationAssertion(rdfs:label "testis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Gray1144.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Gray1144.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -399691,7 +399890,7 @@ DisjointClasses( (female reproductive system) AnnotationAssertion(rdfs:label "female reproductive system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399755,7 +399954,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this class represents a continuous sheet of basal lamina which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'basal lamina' represents a portion of substance on the scale of a single cell.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "basal lamina of epithelium") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Basal_lamina.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Basal_lamina.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399765,7 +399964,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "epithelial") AnnotationAssertion(rdfs:comment "Editor note: surface epithelium may contain non-epithelial cells, such as melanocytes, lymphocytes and dendritic cells, within the sheet of epithelial cells. Do we consider these part of the epithelium, or located-in it?") AnnotationAssertion(rdfs:label "epithelium") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) EquivalentClasses( ObjectUnionOf( )) SubClassOf( ) @@ -399779,14 +399978,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "needs to be synchronized with CL - there is no distinct cuboidal cell in CL") AnnotationAssertion(rdfs:label "simple cuboidal epithelium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray1133.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray1133.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) # Class: (simple columnar epithelium) AnnotationAssertion(rdfs:label "simple columnar epithelium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray1059.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray1059.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) @@ -399798,7 +399997,7 @@ SubClassOf( (simple squamous epithelium) AnnotationAssertion(rdfs:label "simple squamous epithelium") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -399826,7 +400025,7 @@ SubClassOf( (hippocampal commissure) AnnotationAssertion(rdfs:label "hippocampal commissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399885,7 +400084,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "embryonic") AnnotationAssertion(rdfs:label "embryo") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/503"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2d/Wrinkledfrog_embryos.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2d/Wrinkledfrog_embryos.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399904,7 +400103,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "ectodermal") AnnotationAssertion(rdfs:label "ectoderm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray32.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray32.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399914,8 +400113,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "endodermal") AnnotationAssertion(rdfs:label "endoderm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Endoderm2.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray10.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Endoderm2.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray10.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399926,7 +400125,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "mesodermal") AnnotationAssertion(rdfs:label "mesoderm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Mesoderm.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Mesoderm.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399938,7 +400137,7 @@ DisjointClasses( ObjectSomeValues # Class: (pharyngeal branch of vagus nerve) AnnotationAssertion(rdfs:label "pharyngeal branch of vagus nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399951,7 +400150,7 @@ AnnotationAssertion( "stomodeal") AnnotationAssertion( "This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity.") AnnotationAssertion(rdfs:label "stomodeum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -399975,7 +400174,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Innervation notes: They are innervated by the pharyngeal branch of the Vagus nerve (CN X) with the exception of the stylopharyngeus muscle which is innervated by the glossopharyngeal nerve (CN IX).[WP]") AnnotationAssertion(rdfs:label "chordate pharyngeal muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray1030.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray1030.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -399985,7 +400184,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anterior commissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) @@ -399993,7 +400194,7 @@ SubClassOf( "add connects relationships and check these outside mammalia") AnnotationAssertion(rdfs:label "posterior commissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400026,7 +400227,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (stomach) AnnotationAssertion(rdfs:label "stomach") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagram.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400060,7 +400261,9 @@ AnnotationAssertion( "aortic") AnnotationAssertion( "All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches") AnnotationAssertion(rdfs:label "aorta") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -400077,6 +400280,9 @@ AnnotationAssertion( "cardiac") AnnotationAssertion(rdfs:comment "Taxon notes:\" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)\" DOI:10.1101/gad.1485706") AnnotationAssertion(rdfs:label "heart") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -400134,6 +400340,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "requires review for applicability to invertebrate structures, e.g. synganglion") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brain") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400151,8 +400359,8 @@ AnnotationAssertion( ) AnnotationAssertion( "hagfishes have independently evolved a highly laminated cerebral cortex, comparable in many ways to the cerebral cortex of mammals [http://icb.oxfordjournals.org/content/42/4/743]") AnnotationAssertion(rdfs:label "cerebral cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Cerebral_Cortex_location.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Cerebral_Cortex_location.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400167,7 +400375,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - merge with cell layer?") AnnotationAssertion( "laminar") AnnotationAssertion(rdfs:label "lamina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/80/Laminaarcusvertebrae.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/80/Laminaarcusvertebrae.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400185,7 +400393,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (optic chiasma) AnnotationAssertion(rdfs:label "optic chiasma") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/1543%2CVisalius%27OpticChiasma.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/1543%2CVisalius%27OpticChiasma.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -400197,7 +400405,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (thoracic ganglion) AnnotationAssertion(rdfs:label "thoracic ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray849.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray849.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400207,7 +400415,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP]") AnnotationAssertion(rdfs:label "nerve of cervical vertebra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400226,7 +400434,7 @@ AnnotationAssertion( "corneal") AnnotationAssertion( "Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals. In fish, and aquatic vertebrates in general, the cornea plays no role in focusing light, since it has virtually the same refractive index as water") AnnotationAssertion(rdfs:label "cornea") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -400264,7 +400472,7 @@ AnnotationAssertion( "retinal") AnnotationAssertion(rdfs:comment "Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods") AnnotationAssertion(rdfs:label "retina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400318,12 +400526,10 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( "true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck.") AnnotationAssertion( "cervical") AnnotationAssertion(rdfs:label "neck") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Female_neck.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Female_neck.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -400335,7 +400541,7 @@ AnnotationAssertion( "It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life") AnnotationAssertion( "in birds, either ratite (no keel or carina) or carinate (keel and carina present)") AnnotationAssertion(rdfs:label "sternum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400353,7 +400559,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( ) AnnotationAssertion( "humeral") AnnotationAssertion(rdfs:label "humerus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -400372,7 +400578,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "pleural") AnnotationAssertion( "In MA, is_a cavity lining (which we equate to parietal). In FMA, is_a (viscous) serous membrane (which includes mesothelium plus connective tissue). Note the MA structure should probably be associated with the mesothelium of pleura in FMA. JB/EHDAA2 argues the term 'pleura' is best used for the mesothelial lining (thus excluding connective tissue). See https://github.com/obophenotype/uberon/issues/86") AnnotationAssertion(rdfs:label "pleura") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -400399,7 +400605,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tibia") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray260.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray260.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -400426,7 +400632,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "femoral") AnnotationAssertion(rdfs:label "femur") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/73/Gray252.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/73/Gray252.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -400472,7 +400678,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "axillary vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400486,7 +400692,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pons") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -400499,7 +400705,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "penile") AnnotationAssertion( "phallic") AnnotationAssertion(rdfs:label "penis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/87/Labelled_flaccid_penis.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/87/Labelled_flaccid_penis.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400510,7 +400716,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider splitting genitalia from reproductive system") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "reproductive system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Penis.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Penis.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400548,8 +400754,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "ovarian") AnnotationAssertion(rdfs:label "ovary") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -400578,8 +400784,9 @@ AnnotationAssertion( "Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle 'vagina' which functions as the birth canal. Marsupial embryos form a choriovitelline 'placenta' (which can be thought of as something between a monotreme egg and a 'true' placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream.") AnnotationAssertion( "Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused [Wikipedia:Uterus]") AnnotationAssertion(rdfs:label "uterus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6a/Female_reproductive_system_lateral_nolabel.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6a/Female_reproductive_system_lateral_nolabel.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -400591,8 +400798,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "vaginal") AnnotationAssertion( "'The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria.' Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688") AnnotationAssertion(rdfs:label "vagina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Illu_repdt_female.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a4/Vaginal_opening_-_english_description.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Illu_repdt_female.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a4/Vaginal_opening_-_english_description.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400603,7 +400810,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "vulval") AnnotationAssertion(rdfs:label "mammalian vulva") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Female_unshaved_genitalia.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Female_unshaved_genitalia.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400613,7 +400820,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The seminal vesicles secrete a significant proportion of the fluid that ultimately becomes semen. Lipofuscin granules from dead epithelial cells give the secretion its yellowish color. About 50-70% of the seminal fluid in humans originates from the seminal vesicles, but is not expelled in the first ejaculate fractions which are dominated by spermatozoa and zinc-rich prostatic fluid.") AnnotationAssertion(rdfs:label "seminal vesicle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400624,7 +400832,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ejaculatory duct) AnnotationAssertion(rdfs:label "ejaculatory duct") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -400641,7 +400850,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vas deferens) AnnotationAssertion(rdfs:label "vas deferens") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400669,7 +400878,12 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "respiratory system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400726,7 +400940,7 @@ DisjointClasses( (renal system) -AnnotationAssertion( "In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here") AnnotationAssertion(rdfs:label "renal system") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -400744,7 +400958,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "circulatory system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) @@ -400779,7 +400993,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (head of radius) AnnotationAssertion(rdfs:label "head of radius") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/47/Gray214.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/47/Gray214.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -400802,7 +401016,7 @@ DisjointClasses( ) AnnotationAssertion(rdfs:label "musculature") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e5/Muscles_anterior_labeled.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e5/Muscles_anterior_labeled.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -400813,8 +401027,8 @@ AnnotationAssertion( "nervous") AnnotationAssertion( "neural") AnnotationAssertion(rdfs:label "nervous system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -400859,7 +401073,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (nerve fasciculus) -AnnotationAssertion( "note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle'") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle'") AnnotationAssertion(rdfs:label "nerve fasciculus") SubClassOf( ) @@ -400898,7 +401112,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs") AnnotationAssertion(rdfs:label "sensory system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -400929,7 +401143,7 @@ DisjointClasses( "TODO for now we treat vibrissa/whisker as a syonym, but these have different follicles. We could introduce subclasses (see also: Pangolin scales)") AnnotationAssertion( "this class defines an individual hair") AnnotationAssertion(rdfs:label "strand of hair") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/25/Gray945.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/25/Gray945.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400943,9 +401157,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider splitting class") AnnotationAssertion( "In therians, a structure homologous to the yolk sac is is present, but contains no yolk platelets. Instead it is filled with fluid [ISBN:0073040584 (Vertebrates, Kardong)]") AnnotationAssertion(rdfs:label "yolk sac") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/17/Gray22.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/17/Gray22.png"^^xsd:anyURI) SubClassOf( ) -SubClassOf( ) +SubClassOf(Annotation(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/635") ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -400954,7 +401168,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future. In vertebrates the term may refer to a developmental structure") AnnotationAssertion(rdfs:label "foregut") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray27.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray27.png"^^xsd:anyURI) SubClassOf( ) # Class: (chordate pharynx) @@ -400970,7 +401184,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "esophageal") AnnotationAssertion(rdfs:label "esophagus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -400985,7 +401199,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research. The salivary glands of some species are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands") AnnotationAssertion(rdfs:label "saliva-secreting gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -400999,7 +401213,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future. We may explicitly make this a developmental class") AnnotationAssertion(rdfs:label "midgut") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401008,7 +401222,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future (vertebrates have some contribution from NC - https://github.com/obophenotype/uberon/wiki/The-neural-crest). We may explicitly make this a developmental class") AnnotationAssertion(rdfs:label "hindgut") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray472.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray472.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401029,7 +401243,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (neural tube) AnnotationAssertion(rdfs:label "neural tube") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -401040,7 +401254,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "hypopharyngeal") AnnotationAssertion(rdfs:label "hypopharynx") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401052,7 +401266,9 @@ AnnotationAssertion( "rectal") AnnotationAssertion( "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html") AnnotationAssertion(rdfs:label "rectum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401063,8 +401279,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (Malpighian tubule) -AnnotationAssertion( "this will be ceded to the Arthropod Anatomy Ontology") AnnotationAssertion( "It is unclear as to whether the Malpighian tubules of arachnids and those of the Uniramia are homologous or the result of convergent evolution.[Wikipedia:Malpighian_tubule_system]") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE this will be ceded to the Arthropod Anatomy Ontology") AnnotationAssertion(rdfs:label "Malpighian tubule") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401088,10 +401304,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ventral pancreatic duct) -AnnotationAssertion( "in EHDAA2 this is an epithelium, in FMA the wall consists of epithelium and connective tissue") AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "EDITOR_NOTE in EHDAA2 this is an epithelium, in FMA the wall consists of epithelium and connective tissue") AnnotationAssertion(rdfs:label "ventral pancreatic duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401102,9 +401318,9 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (parotid main excretory duct) -AnnotationAssertion( "we follow MP in identifying the 'parotid duct' with the main excretory duct, although in fact the parotid has many other ducts of different types") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE we follow MP in identifying the 'parotid duct' with the main excretory duct, although in fact the parotid has many other ducts of different types") AnnotationAssertion(rdfs:label "parotid main excretory duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1023.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1023.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401115,7 +401331,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "strictly speaking the term intervertebral disk [applies to intervertebral cartilage]") AnnotationAssertion(rdfs:comment "whose gel-like core is nucleus puloposus, by this definition only in mammals") AnnotationAssertion(rdfs:label "intervertebral disk") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray301.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray301.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401124,7 +401340,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vertebral arch joint) AnnotationAssertion(rdfs:label "vertebral arch joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray90.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray90.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401133,7 +401349,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (skin of back) -AnnotationAssertion( "TODO - distinguish between entire skin of region and arbitrary zone of skin on region") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region") AnnotationAssertion(rdfs:label "skin of back") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -401146,7 +401362,7 @@ AnnotationAssertion( "not homologous to the external carotid of zebrafish (Goodrich, 1958) - http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html; check XAO") AnnotationAssertion(rdfs:label "external carotid artery") AnnotationAssertion(rdfs:seeAlso "https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/13/External_carotid_a.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/13/External_carotid_a.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401167,7 +401383,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "posterior vena cava") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401199,7 +401415,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (bony vertebral centrum) AnnotationAssertion(rdfs:label "bony vertebral centrum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/63/Corpusvertebrae.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/63/Corpusvertebrae.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401210,26 +401426,26 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback. [Wikipedia:Spinous_process]") AnnotationAssertion(rdfs:label "neural spine") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/48/Processusspinosusvertebrae.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/48/Processusspinosusvertebrae.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (transverse process of vertebra) AnnotationAssertion(rdfs:label "transverse process of vertebra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Processustransversusvertebrae.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Processustransversusvertebrae.PNG"^^xsd:anyURI) SubClassOf( ) # Class: (pedicle of vertebra) AnnotationAssertion(rdfs:label "pedicle of vertebra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d0/Pediculusarcusvertebrae.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d0/Pediculusarcusvertebrae.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (prezygapophysis) -AnnotationAssertion( "TODO - add distinct classes for hemal vs neural?") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE TODO - add distinct classes for hemal vs neural?") AnnotationAssertion(rdfs:label "prezygapophysis") SubClassOf( ) @@ -401269,7 +401485,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (skin of head) -AnnotationAssertion( "TODO - distinguish between entire skin of region and arbitrary zone of skin on region") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region") AnnotationAssertion(rdfs:label "skin of head") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -401277,7 +401493,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (skin of trunk) -AnnotationAssertion( "TODO - distinguish between entire skin of region and arbitrary zone of skin on region") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region") AnnotationAssertion(rdfs:label "skin of trunk") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -401321,12 +401537,12 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (calcareous tooth) -AnnotationAssertion( "we place ZFA ctb 5 tooth here for now. Consider changing name from calcaeeous tooth. Note that sea cucumbers develop calcareous tooth-like structures") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "dental") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE we place ZFA ctb 5 tooth here for now. Consider changing name from calcaeeous tooth. Note that sea cucumbers develop calcareous tooth-like structures") AnnotationAssertion(rdfs:label "calcareous tooth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -401364,8 +401580,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sacral vertebra) -AnnotationAssertion( "todo - AAO placement to be confirmed by AAO curators (the AAO class may also include modified ribs)") AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "EDITOR_NOTE todo - AAO placement to be confirmed by AAO curators (the AAO class may also include modified ribs)") AnnotationAssertion(rdfs:label "sacral vertebra") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -401396,7 +401612,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (axillary lymph node) AnnotationAssertion(rdfs:label "axillary lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401404,7 +401620,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight - one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat") AnnotationAssertion(rdfs:label "incisor tooth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Gray997.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Gray997.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) @@ -401415,7 +401631,7 @@ DisjointClasses( ) AnnotationAssertion(rdfs:label "pectoralis minor") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5d/Pectoralis_minor.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5d/Pectoralis_minor.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401454,7 +401670,7 @@ AnnotationAssertion( "clavicular") AnnotationAssertion( "The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X].") AnnotationAssertion(rdfs:label "clavicle bone") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -401466,7 +401682,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (intercostal muscle) AnnotationAssertion(rdfs:label "intercostal muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401484,7 +401700,7 @@ AnnotationAssertion( "In humans it inserts along a roughened line deep in the groove. In other mammals (most, I believe) it is an actual projection, the latissimus dorsi process [FEED:rd] [https://github.com/obophenotype/uberon/issues/1192]") AnnotationAssertion(rdfs:comment "Dorsal group[Kardong]") AnnotationAssertion(rdfs:label "latissimus dorsi muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -401507,20 +401723,24 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (right lobe of liver) AnnotationAssertion(rdfs:label "right lobe of liver") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^xsd:anyURI) SubClassOf( ) # Class: (left lobe of liver) AnnotationAssertion(rdfs:label "left lobe of liver") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^xsd:anyURI) SubClassOf( ) # Class: (lobe of thyroid gland) AnnotationAssertion(rdfs:comment "The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciæ, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids") AnnotationAssertion(rdfs:label "lobe of thyroid gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401548,7 +401768,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "serratus ventralis") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/c6/Serratus_anterior.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/c6/Serratus_anterior.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401575,7 +401795,7 @@ DisjointClasses( ObjectSomeValues # Class: (vertebral foramen) AnnotationAssertion(rdfs:label "vertebral foramen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/10/Foramenvertebrale.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/10/Foramenvertebrale.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401609,7 +401829,7 @@ DisjointClasses( "TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Todo - group FBbt:00005073 - somatic muscle.") AnnotationAssertion(rdfs:label "skeletal muscle tissue") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/c0/Skeletal_muscle.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/c0/Skeletal_muscle.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401620,7 +401840,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells.") AnnotationAssertion(rdfs:label "smooth muscle tissue") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/3b/Glatte_Muskelzellen.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/3b/Glatte_Muskelzellen.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401631,7 +401851,7 @@ DisjointClasses( (mesothelium) AnnotationAssertion(rdfs:label "mesothelium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401644,7 +401864,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "dorsal") AnnotationAssertion( "In humans, called the back, a large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body") AnnotationAssertion(rdfs:label "dorsum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/432px-Gray-back.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/432px-Gray-back.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401652,7 +401872,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior mesenteric vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401664,7 +401884,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "common iliac vein") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401675,7 +401897,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401686,6 +401910,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right renal vein") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401694,7 +401920,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left renal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401703,7 +401931,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "todo - add developmental relationships for other taxa") AnnotationAssertion(rdfs:label "hepatic vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401718,7 +401946,7 @@ DisjointClasses( "TODO - check testicular vs spermatic vein (MA:0002218)") AnnotationAssertion( "In humans, the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel") AnnotationAssertion(rdfs:label "testicular vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray590.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray590.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401732,7 +401960,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ovarian vein) AnnotationAssertion(rdfs:label "ovarian vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Ovarschaf.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Ovarschaf.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401743,7 +401971,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (suprarenal vein) AnnotationAssertion(rdfs:label "suprarenal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401752,8 +401980,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cystic duct) AnnotationAssertion(rdfs:label "cystic duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401770,7 +401998,9 @@ AnnotationAssertion( "caecal") AnnotationAssertion(rdfs:comment "Taxon notes: in some herbivorous lizards, a cecum is present between small and large intestines[Kardong]") AnnotationAssertion(rdfs:label "caecum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401787,7 +402017,9 @@ AnnotationAssertion( ) AnnotationAssertion( "appendiceal") AnnotationAssertion(rdfs:label "vermiform appendix") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401810,7 +402042,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ascending colon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401819,7 +402053,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "transverse colon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401828,7 +402064,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "descending colon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401837,7 +402075,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sigmoid colon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401845,7 +402085,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (fundus of stomach) AnnotationAssertion(rdfs:label "fundus of stomach") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -401855,7 +402095,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "we include this as zone of stomach even though it is not distinguished by gland type") AnnotationAssertion(rdfs:label "body of stomach") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) SubClassOf( ) # Class: (cardia of stomach) @@ -401863,7 +402103,7 @@ SubClassOf( "There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that 'The gastric cardia is now clearly considered to be part of the stomach'[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP]") AnnotationAssertion( "We follow Kardong in defining stomach regions by glands.") AnnotationAssertion(rdfs:label "cardia of stomach") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401876,13 +402116,13 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (greater curvature of stomach) AnnotationAssertion(rdfs:label "greater curvature of stomach") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) SubClassOf( ) # Class: (pyloric antrum) AnnotationAssertion(rdfs:label "pyloric antrum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401895,7 +402135,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "We follow Kardong in defining stomach regions by glands") AnnotationAssertion( "pyloric") AnnotationAssertion(rdfs:label "pylorus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -401974,7 +402214,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "common bile duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -401986,7 +402226,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part") AnnotationAssertion(rdfs:label "common hepatic duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -402015,7 +402255,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (visceral peritoneum) AnnotationAssertion(rdfs:label "visceral peritoneum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402035,8 +402275,10 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior mesenteric artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402046,7 +402288,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior mesenteric artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402059,7 +402303,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "renal arteries vary widely even in humans. Sub-structures should be checked for taxon variability.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402070,7 +402316,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP]") AnnotationAssertion(rdfs:label "right renal artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402080,6 +402328,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP]") AnnotationAssertion(rdfs:label "left renal artery") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402088,7 +402338,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "testicular artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402118,7 +402368,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ovarian artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402130,7 +402380,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "See notes for parent class") AnnotationAssertion(rdfs:label "common iliac artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Iliac_artery_bifurcation_and_aorta.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Iliac_artery_bifurcation_and_aorta.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402140,7 +402390,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "currently defined in a generic fashion.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hepatic artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Common_and_proper_hepatic_artery.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Common_and_proper_hepatic_artery.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402151,7 +402401,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "splenic artery") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/268"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402163,7 +402415,9 @@ DisjointClasses( ) AnnotationAssertion(rdfs:label "middle colic artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402174,7 +402428,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ileocolic artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402186,7 +402442,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mucosa of stomach) AnnotationAssertion(rdfs:label "mucosa of stomach") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/1c/Normal_gastric_mucosa_intermed_mag.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/1c/Normal_gastric_mucosa_intermed_mag.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402304,7 +402560,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Reptiles have accumulations of lymphocytes in their guts that may be primitive Peyer's patches (Zapata and Solas).") AnnotationAssertion(rdfs:label "Peyer's patch") SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf(Annotation(rdfs:comment "EDITOR_NOTE check this") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) @@ -402328,7 +402584,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "in mammals, villi are (largely?) absent from the large intestine, so we treat this as equivalent to small intestinal villus. small/large subdivision may not make sense for all species for which this is present (see ZFA). Note that VHOG quotes ISBN:978-0030223693 as suggesting there are some villi in the large intestine") AnnotationAssertion(rdfs:label "intestinal villus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402340,7 +402596,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior mesenteric vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402350,7 +402607,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "jejunal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402371,7 +402628,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "middle colic vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402382,7 +402641,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ileocolic vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402394,7 +402655,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "transversus abdominis muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402405,6 +402666,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "right ureter") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_R.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402413,6 +402676,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left ureter") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_L.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402422,7 +402687,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter") AnnotationAssertion(rdfs:label "renal pelvis") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402439,7 +402704,11 @@ DisjointClasses( ) AnnotationAssertion( "In the adult metanephros, it forms a continuous smooth outer zone with a number of projections that extend down between the pyramids. It contains the renal corpuscles and the renal tubules except for parts of the loop of Henle which descend into the renal medulla. It also contains blood vessels and cortical collecting ducts. The renal cortex is the part of the kidney where ultrafiltration occurs.[WP]") AnnotationAssertion(rdfs:label "cortex of kidney") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402450,7 +402719,11 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal papilla") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -402461,7 +402734,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron") AnnotationAssertion(rdfs:label "renal corpuscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -402474,7 +402747,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration[WP].") AnnotationAssertion( "One fold of the S-shaped body gives rise to Bowman's capsule[GUDMAP]") AnnotationAssertion(rdfs:label "glomerular capsule") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -402523,7 +402796,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO") AnnotationAssertion(rdfs:label "adrenal cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402538,7 +402811,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (adrenal medulla) AnnotationAssertion(rdfs:label "adrenal medulla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402607,7 +402880,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (internal anal sphincter) AnnotationAssertion(rdfs:label "internal anal sphincter") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray1079.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray1079.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -402621,8 +402894,8 @@ AnnotationAssertion( "anal") AnnotationAssertion( "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html") AnnotationAssertion(rdfs:label "anus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Protovsdeuterostomes.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Protovsdeuterostomes.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402642,6 +402915,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (falciform ligament) AnnotationAssertion(rdfs:label "falciform ligament") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402668,7 +402943,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "red pulp of spleen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402678,7 +402953,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "marginal zone of spleen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402723,7 +402998,9 @@ AnnotationAssertion( "vesical") AnnotationAssertion( "The urinary bladder evolved in tetrapods. Birds to not possess a true urinary bladder, although Palaeognathae have an undifferentiated cloacal outpocketing that serves a similar function[https://github.com/obophenotype/uberon/issues/454]") AnnotationAssertion(rdfs:label "urinary bladder") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -402747,7 +403024,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill.") AnnotationAssertion(rdfs:label "trigone of urinary bladder") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402756,7 +403035,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (neck of urinary bladder) AnnotationAssertion(rdfs:label "neck of urinary bladder") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402821,7 +403100,9 @@ AnnotationAssertion( "pancreatic") AnnotationAssertion( "The zebrafish does not have a discrete pancreas. Exocrine pancreatic tissue can be found scattered along the intestinal tract. The acinar structure of the exocrine pancreas is very similar to that of mammals and comprises cells with a very dark, basophilic cytoplasm") AnnotationAssertion(rdfs:label "pancreas") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -402843,7 +403124,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (femoral nerve) AnnotationAssertion(rdfs:label "femoral nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -402860,7 +403141,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (acetabular part of hip bone) AnnotationAssertion(rdfs:label "acetabular part of hip bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -402870,6 +403151,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO add taxon-specific part of relations connecting sub-structures to this.") AnnotationAssertion(rdfs:label "bony pelvis") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -402894,7 +403177,7 @@ DisjointClasses( "currently this class is restricted to exclude the teleost bone as the definition mentions ilium, ischium and pubis. In future we may add a grouping class for girdle bones that supports the appendage") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "innominate bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -402906,6 +403189,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "iliac") AnnotationAssertion(rdfs:label "ilium") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402924,7 +403209,9 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( "ischial") AnnotationAssertion(rdfs:label "ischium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402941,6 +403228,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pubis) AnnotationAssertion(rdfs:label "pubis") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -402991,7 +403280,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "The misnomer 'portal triad' traditionally has included only the first three structures, and was named before lymphatic vessels were discovered in the structure. It can refer both to the largest branch of each of these vessels running inside the hepatoduodenal ligament, and to the smaller branches of these vessels inside the liver.") AnnotationAssertion(rdfs:label "portal triad") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/62/Portal_triad.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/62/Portal_triad.JPG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403045,7 +403334,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "conducts the flow of bile countercurrent to the direction of portal blood flow and connects with the canal of Hering[DOI:10.1002/cphy.c120027]") AnnotationAssertion( "The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP]") AnnotationAssertion(rdfs:label "bile canaliculus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403058,7 +403347,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "kidney terms require review for cross-vertebrate compatibility and developmental relationships.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nephron") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403077,7 +403366,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (proximal convoluted tubule) AnnotationAssertion(rdfs:label "proximal convoluted tubule") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403094,7 +403383,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "loop of Henle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403105,7 +403394,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "descending limb of loop of Henle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403128,7 +403417,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - thick/thin check. Also - does the loop of Henle overlap the distal convoluted tubule? FMA divides DCT into straight and convoluted portions") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thick ascending limb of loop of Henle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403139,7 +403428,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "in humans it is responsible for the reabsorption of about 5% of filtered sodium via the thiazide-sensitive Na-Cl symporter.") AnnotationAssertion(rdfs:label "distal convoluted tubule") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403172,7 +403461,7 @@ AnnotationAssertion( "endometrial") AnnotationAssertion( "Animals that have estrous cycles reabsorb the endometrium if conception does not occur during that cycle. Animals that have menstrual cycles shed the endometrium through menstruation instead") AnnotationAssertion(rdfs:label "endometrium") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403185,7 +403474,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "myometrial") AnnotationAssertion( "The myometrium stretches (the smooth muscle cells expand in both size and number) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss.") AnnotationAssertion(rdfs:label "myometrium") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403199,7 +403488,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check for parallel structure with peritoneum") AnnotationAssertion(rdfs:label "serosa of uterus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -403209,8 +403498,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (glans penis) AnnotationAssertion(rdfs:label "glans penis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/13/Anteriorglanspenis.jpg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/13/Anteriorglanspenis.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403224,8 +403513,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "scrotal") AnnotationAssertion( "The scrotum of marsupials is not homologous with the scrotum of mammals[ISBN:113945742X]") AnnotationAssertion(rdfs:label "scrotum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Scrotum_warm_and_cold.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Scrotum_warm_and_cold.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403239,7 +403528,7 @@ AnnotationAssertion( "epididymal") AnnotationAssertion( "Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells.") AnnotationAssertion(rdfs:label "epididymis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403256,6 +403545,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion( "non-functional in monotremes[ISBN:978-0226870137]") AnnotationAssertion(rdfs:label "right uterine tube") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_R.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403264,6 +403554,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left uterine tube") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_L.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403284,9 +403575,8 @@ AnnotationAssertion( "These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte in humans. These eggs/ova are only developed once every menstrual cycle (e.g. once a month in humans)") AnnotationAssertion( "The somatic cell component of the follicle produces hormones important for oocyte development and proper endocrine function") AnnotationAssertion(rdfs:label "ovarian follicle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ca/Human_ovarian_follicle.jpg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG"^^xsd:anyURI) -SubClassOf( ) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ca/Human_ovarian_follicle.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403298,7 +403588,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cumulus oophorus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1164.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1164.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403318,7 +403608,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "external iliac artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray539.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray539.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403326,7 +403616,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "internal iliac artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d3/Iliac_artery_bifurcation.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d3/Iliac_artery_bifurcation.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403336,7 +403626,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "umbilical artery") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/328"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403345,7 +403636,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior vesical artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/13/Inferiorvesical.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/13/Inferiorvesical.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -403358,7 +403649,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery (fetal hypogastric artery)[WP]") AnnotationAssertion(rdfs:label "superior vesical artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/02/Internal_iliac_branches.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/02/Internal_iliac_branches.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -403369,7 +403660,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "external iliac vein") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403378,7 +403670,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "internal iliac vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403396,7 +403690,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vaginal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -403409,7 +403703,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "mouse sciatic nerve origins predominantly from the third lumbar (L3) and L4 spinal nerves, unlike the L4 and L5 in rats - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/") AnnotationAssertion(rdfs:label "sciatic nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403418,7 +403712,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tibial nerve) AnnotationAssertion(rdfs:label "tibial nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403428,7 +403722,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "derives into deep and superficial branches") AnnotationAssertion(rdfs:label "common fibular nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray832.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray832.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403463,7 +403757,7 @@ SubClassOf( ) AnnotationAssertion(rdfs:label "pampiniform plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray1147.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray1147.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403482,8 +403776,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (prepuce of penis) AnnotationAssertion(rdfs:label "prepuce of penis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/c/cc/Foreskin2.jpg/200px-Foreskin2.jpg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e6/Foreskin_CloseupV2.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/c/cc/Foreskin2.jpg/200px-Foreskin2.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e6/Foreskin_CloseupV2.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403494,7 +403788,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (male urethra) AnnotationAssertion(rdfs:label "male urethra") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403502,7 +403797,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (female urethra) AnnotationAssertion(rdfs:label "female urethra") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403511,7 +403806,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "prostatic urethra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403528,7 +403824,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (spongiose part of urethra) AnnotationAssertion(rdfs:label "spongiose part of urethra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403551,8 +403847,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (seminiferous tubule of testis) AnnotationAssertion(rdfs:label "seminiferous tubule of testis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/49/Seminiferous_tubule_and_sperm_low_mag.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6a/Gray1145.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/49/Seminiferous_tubule_and_sperm_low_mag.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6a/Gray1145.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403573,7 +403869,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vaginal hymen) AnnotationAssertion(rdfs:label "vaginal hymen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403591,7 +403887,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "especially abundant in newborns and in hibernating mammals") AnnotationAssertion( "thermogenesis") AnnotationAssertion(rdfs:label "brown adipose tissue") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/69/Brownfat_PETCT.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/69/Brownfat_PETCT.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403608,7 +403904,9 @@ DisjointClasses( ) AnnotationAssertion( "coccygeal") AnnotationAssertion(rdfs:label "coccyx") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -403620,7 +403918,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lacrimal sac) AnnotationAssertion(rdfs:label "lacrimal sac") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403642,7 +403940,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "anal region") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/507"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403651,7 +403949,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "deep femoral artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403662,7 +403960,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medial circumflex femoral artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403691,7 +403989,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "great saphenous vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Great_saphenous_vein.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Great_saphenous_vein.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403699,7 +403997,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In humans, the sacrum supports the spine and is supported in turn by an ilium on each side") AnnotationAssertion(rdfs:label "sacro-iliac joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray319.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray319.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -403711,7 +404009,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (parietal peritoneum) AnnotationAssertion(rdfs:label "parietal peritoneum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403724,7 +404022,7 @@ AnnotationAssertion( "Some literature reports don't consider the external anal sphincter to be a true sphincter muscle.") AnnotationAssertion(rdfs:label "external anal sphincter") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/2344") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -403737,7 +404035,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "A&P heads in rat, single head in humans[DOI:10.1002/ar.22919]") AnnotationAssertion(rdfs:label "gluteus medius") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403748,7 +404046,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "biceps femoris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403759,7 +404057,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (quadriceps femoris) AnnotationAssertion(rdfs:label "quadriceps femoris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) EquivalentClasses( ObjectUnionOf( )) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403770,7 +404068,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (rectus femoris) AnnotationAssertion(rdfs:label "rectus femoris") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403781,7 +404079,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vastus lateralis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403789,7 +404087,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vastus medialis") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/05/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/05/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403800,7 +404098,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "semimembranosus muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Semimembranosus_muscle.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Semimembranosus_muscle.PNG"^^xsd:anyURI) SubClassOf( ) # Class: (muscle of leg) @@ -403818,7 +404116,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 parietal lobe") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "primary motor cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403829,7 +404127,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tibialis anterior) AnnotationAssertion(rdfs:label "tibialis anterior") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403841,7 +404139,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "extensor digitorum longus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403857,7 +404155,7 @@ AnnotationAssertion( "In mammals this muscle has two heads[ISBN:0073040584]") AnnotationAssertion( "involved in standing, walking, running and jumping") AnnotationAssertion(rdfs:label "gastrocnemius") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gastrocnemius.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gastrocnemius.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403874,7 +404172,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "soleal") AnnotationAssertion(rdfs:label "soleus muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403888,7 +404186,7 @@ DisjointClasses( ObjectSomeValues # Class: (auditory cortex) AnnotationAssertion(rdfs:label "auditory cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Brodmann_41_42.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Brodmann_41_42.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403900,7 +404198,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery.") AnnotationAssertion(rdfs:label "axillary artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/88/Axillary_limits.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/88/Axillary_limits.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -403912,7 +404210,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "subscapular artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -403922,7 +404220,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - add logical definition to determine if AAO class belongs here. Classified as erector spinae in AAO") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "longissimus thoracis muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png"^^xsd:anyURI) SubClassOf( ) # Class: (longissimus cervicis muscle) @@ -403930,7 +404228,7 @@ SubClassOf( ) AnnotationAssertion(rdfs:comment "; nerve supply, dorsal primary rami of lower cervical and upper thoracic spinal nerves") AnnotationAssertion(rdfs:label "longissimus cervicis muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -403954,7 +404252,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "skin of neck") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (skin of thorax) @@ -404012,7 +404310,7 @@ AnnotationAssertion( "ulnar") AnnotationAssertion(rdfs:comment "The corresponding bone in the posterior fin/limb is the fibula.") AnnotationAssertion(rdfs:label "ulna") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404035,7 +404333,7 @@ AnnotationAssertion( ) AnnotationAssertion( "In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius[WP]") AnnotationAssertion(rdfs:label "radiale") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) SubClassOf( ) # Class: (intermedium) @@ -404043,7 +404341,7 @@ SubClassOf( ) AnnotationAssertion( "articulating with the ulnare and the radiale[VSAO]. human articulations: radius proximally capitate and hamate distally scaphoid laterally triangular medially") AnnotationAssertion(rdfs:label "intermedium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404074,7 +404372,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "distal carpal bone 3") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404086,7 +404384,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "distal carpal bone 4") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404120,7 +404418,7 @@ DisjointClasses( (carpal bone) AnnotationAssertion(rdfs:label "carpal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404149,7 +404447,7 @@ AnnotationAssertion( "epiphysial") AnnotationAssertion(rdfs:label "epiphysis") AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404166,6 +404464,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "MP distinguishes compact/cortical bone. in other AOs they are syns") AnnotationAssertion(rdfs:label "compact bone tissue") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) @@ -404213,7 +404513,7 @@ AnnotationAssertion( "pectoral") AnnotationAssertion( "thoracic") AnnotationAssertion(rdfs:label "chest") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404239,7 +404539,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "fibular") AnnotationAssertion(rdfs:label "fibula") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Illu_lower_extremity.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Illu_lower_extremity.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404253,7 +404553,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tarsal bone) AnnotationAssertion(rdfs:label "tarsal bone") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404266,7 +404566,7 @@ DisjointClasses( (metatarsal bone) AnnotationAssertion(rdfs:label "metatarsal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404297,7 +404597,7 @@ AnnotationAssertion( "calcaneal") AnnotationAssertion( "synonymous with the fibulare of basal tetrapods.") AnnotationAssertion(rdfs:label "calcaneus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404309,7 +404609,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "navicular bone of pes") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray276.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray276.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404319,7 +404619,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "distal tarsal bone 1") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray290.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray290.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404333,7 +404633,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "facial") AnnotationAssertion(rdfs:label "face") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Mona_Lisa_headcrop.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Mona_Lisa_headcrop.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404365,7 +404665,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "currently declared as overlapping hand, as AOs disagree over whether some wrist parts are in the arm or hand") AnnotationAssertion( "this class refers to the combination of the stylopod and zeugopod of a forelimb. Sometimes (cf FMA), 'arm' denotes the stylopod only; sometimes (cf MA), 'arm' denotes the part of the forelimb covering both (i.e. shoulder to hand). Also note distinction between arm and forelimb: hand is part of forelimb, but not part of arm") AnnotationAssertion(rdfs:label "arm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Upperarm.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Upperarm.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404377,7 +404677,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "cubital") AnnotationAssertion( "Naming conventions for pod terms under discussion within phenoscape group") AnnotationAssertion(rdfs:label "elbow") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5c/Elbow_coude.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5c/Elbow_coude.JPG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404387,8 +404687,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "Not present in Anurans (Phenotype RCN Oct 2012)") AnnotationAssertion(rdfs:label "manual digit 1") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Thumb-up.jpg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2c/Thumbs_up.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Thumb-up.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2c/Thumbs_up.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404401,7 +404701,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "coxal") AnnotationAssertion(rdfs:label "hip") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Hip.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Hip.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404410,14 +404710,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "knee") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Male_Knee_by_David_Shankbone.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Male_Knee_by_David_Shankbone.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (pedal digit) AnnotationAssertion(rdfs:label "pedal digit") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Toes.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Toes.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404427,7 +404727,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (shoulder) AnnotationAssertion(rdfs:label "shoulder") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/90/Shoulderjoint.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/90/Shoulderjoint.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404445,7 +404745,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sternoclavicular joint) AnnotationAssertion(rdfs:label "sternoclavicular joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray325.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray325.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404455,7 +404755,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "note that in this ontology 'glenoid fossa' is a cavity (consistent with FMA) - consider adding a class for the surface of the scapula that is adjacent to this cavity, and making a more explicit connects relationship") AnnotationAssertion(rdfs:label "glenohumeral joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray327.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray327.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404477,7 +404777,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vaginal venous plexus) AnnotationAssertion(rdfs:label "vaginal venous plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404487,7 +404787,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymphatic vessel") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/44/Illu_lymph_capillary.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/44/Illu_lymph_capillary.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404516,7 +404816,7 @@ DisjointClasses( ) AnnotationAssertion(rdfs:comment "We use a generic definition that includes the deltoideus as represented in AAO: 'Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus'. Kardong: Dorsal group") AnnotationAssertion(rdfs:label "deltoid") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/93/Deltoideus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/93/Deltoideus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404539,7 +404839,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage.[VSAO]") AnnotationAssertion(rdfs:label "sesamoid bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray350.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray350.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404589,8 +404889,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (articular capsule) AnnotationAssertion(rdfs:label "articular capsule") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray299.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray299.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404600,7 +404900,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "knee joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ca/Knee.agr.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ca/Knee.agr.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404635,7 +404935,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "todo - accurately represent different types of ankle joint") AnnotationAssertion(rdfs:label "ankle joint") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404670,7 +404970,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (wrist joint) AnnotationAssertion(rdfs:label "wrist joint") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Human_wrist.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Human_wrist.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404681,7 +404981,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "radial nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray818.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray818.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404694,8 +404994,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "axillary nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404706,7 +405006,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This currently groups the major and minor muscles (which have different attachment sites) as well as the AAO structure: Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus") AnnotationAssertion(rdfs:label "pectoral muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -404717,7 +405017,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ascending aorta") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404782,7 +405084,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (biceps brachii) AnnotationAssertion(rdfs:label "biceps brachii") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5d/Biceps_brachii_muscle06.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5d/Biceps_brachii_muscle06.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404797,7 +405099,9 @@ AnnotationAssertion( ) AnnotationAssertion( "birds have right aortic arch, mammals left.") AnnotationAssertion(rdfs:label "arch of aorta") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404811,7 +405115,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Dorsal group derivative that acts on the forearm[Kardong]") AnnotationAssertion(rdfs:label "triceps brachii") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/83/Triceps_brachii.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/83/Triceps_brachii.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -404857,7 +405161,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "results from fusion of left and right dorsal aortae") AnnotationAssertion(rdfs:label "descending aorta") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404869,7 +405175,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (thoracic aorta) AnnotationAssertion(rdfs:label "thoracic aorta") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404880,7 +405186,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Many of the branches of the abdominal aorta in mammals may be branches of the dorsal aorta in other vertebrates") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "abdominal aorta") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404913,7 +405219,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (radio-ulnar joint) AnnotationAssertion(rdfs:label "radio-ulnar joint") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/50/Forearm_labeled.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/50/Forearm_labeled.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -404925,7 +405231,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brachiocephalic artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404939,7 +405247,7 @@ AnnotationAssertion( ) AnnotationAssertion( "in birds and reptiles, develops from arch III and parts of ventral and dorsal aortae") AnnotationAssertion(rdfs:label "common carotid artery plus branches") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404951,7 +405259,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "placement of the MA class here is not strictly correct, as the MA class does not include the branches") AnnotationAssertion(rdfs:label "right common carotid artery plus branches") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404959,7 +405267,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "internal carotid artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -404975,7 +405283,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO)") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "subclavian artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -404990,7 +405298,7 @@ AnnotationAssertion( "in humans, arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery") AnnotationAssertion( "proximal part arises from right 4th aortic arch in humans") AnnotationAssertion(rdfs:label "right subclavian artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405002,7 +405310,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]") AnnotationAssertion(rdfs:label "vertebral artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/ff/Vertebral_artery.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/ff/Vertebral_artery.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405013,7 +405321,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "placement of the MA class here is not strictly correct, as the MA class does not include the branches") AnnotationAssertion(rdfs:label "left common carotid artery plus branches") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405029,7 +405339,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "popliteal lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405040,7 +405350,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "popliteal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405050,7 +405360,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anterior tibial vein") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4e/Gray440_color.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4e/Gray440_color.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405059,7 +405369,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "posterior tibial vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405068,7 +405378,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "small saphenous vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405103,7 +405413,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney arcuate artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405144,8 +405454,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "upper respiratory tract") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405154,8 +405464,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lower respiratory tract") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405169,7 +405479,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this class refers to the mereological sum of digastric muscles in an organism (typically two).") AnnotationAssertion(rdfs:label "digastric muscle group") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Digastricus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Digastricus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405179,7 +405489,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Taxon motes: mylohyoideus and digastricus anterior of rats derived from intermandibularis posterior, see e.g. Jarvik [53] http://www.biomedcentral.com/1471-213X/8/24/table/T3") AnnotationAssertion(rdfs:label "mylohyoid muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/92/Mylohyoid_muscle.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/92/Mylohyoid_muscle.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405191,7 +405501,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "draws hyoid cranially") AnnotationAssertion(rdfs:label "geniohyoid muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2c/Geniohyoid_muscle.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2c/Geniohyoid_muscle.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405203,7 +405513,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cricothyroid muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405217,7 +405527,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "buccal") AnnotationAssertion( "In many animals the inside of the cheek is lined with mucous membrane covered with stratified squamous epithelium and supplied with secretions from buccal glands.") AnnotationAssertion(rdfs:label "cheek") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a9/Chica_cachetona.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a9/Chica_cachetona.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405241,7 +405551,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "genioglossus muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Genioglossus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Genioglossus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405253,7 +405563,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hyoglossus muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Hyoglossus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Hyoglossus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405265,7 +405575,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (styloglossus) AnnotationAssertion(rdfs:label "styloglossus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Styloglossus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Styloglossus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405275,8 +405585,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "palatoglossus muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405310,7 +405620,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (facial muscle) AnnotationAssertion(rdfs:label "facial muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405322,7 +405632,7 @@ DisjointClasses( ) AnnotationAssertion(rdfs:comment "It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. [Wikipedia:Orbicularis_oculi_muscle]") AnnotationAssertion(rdfs:label "orbicularis oculi muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405337,7 +405647,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "connects to main OB (in taxa where main/accessory distinction is important)") AnnotationAssertion(rdfs:label "olfactory nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/be/Gray771.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/be/Gray771.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405348,7 +405658,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (levator labii superioris) AnnotationAssertion(rdfs:label "levator labii superioris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8f/Levator_labii_superioris.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8f/Levator_labii_superioris.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405357,7 +405667,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (depressor labii inferioris) AnnotationAssertion(rdfs:label "depressor labii inferioris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Depressor_labii_inferioris.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Depressor_labii_inferioris.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -405373,7 +405683,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "logical definition provided by FEED") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "buccinator muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Buccinator.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Buccinator.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405391,7 +405701,9 @@ AnnotationAssertion( "in humans, branches off the arch of aorta") AnnotationAssertion( "arises from left intersegmental 6th artery in the region of the 6th -7th cervical segment in humans") AnnotationAssertion(rdfs:label "left subclavian artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405404,7 +405716,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). In the mouse, The right pulmonary vein passes dorsal to the right superior vena cava, the left pulmonary dorsal to the left superior vena cava (Biology of the Laboratory Mouse, Green).") AnnotationAssertion(rdfs:label "anterior vena cava") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Venenwinkel.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Venenwinkel.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405415,7 +405727,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "internal jugular vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray562.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray562.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405425,7 +405737,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "subclavian vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405453,7 +405765,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (venous plexus) AnnotationAssertion(rdfs:label "venous plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405465,7 +405777,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "check development relationships in different species") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "azygos vein") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b4/Azygos_vein.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b4/Azygos_vein.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405477,7 +405789,7 @@ AnnotationAssertion( "The masseter is a jaw muscle of therapsids derived from the m. adductor mandibulae externus, which originates in the adductor chamber (in the temporal fenestra) and inserts on the coronoid process and internal surface of the lower jaw.[Palaeos]") AnnotationAssertion(rdfs:label "masseter muscle") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/540"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/78/Illu_head_neck_muscle.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/78/Illu_head_neck_muscle.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405493,7 +405805,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "temporalis muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d3/Gray382.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d3/Gray382.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405505,7 +405817,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stapedius muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405519,7 +405831,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tensor tympani") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405539,7 +405851,7 @@ AnnotationAssertion( "Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi.") AnnotationAssertion( "Myofibers in extraocular muscles are derived from mesoderm, whereas muscle connective tissue cells arise from neural crest.[PMID:16638982]") AnnotationAssertion(rdfs:label "extra-ocular muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -405554,7 +405866,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Taxon notes (from VHOG): \"The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.\" Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127]") AnnotationAssertion(rdfs:label "medial rectus extraocular muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405563,14 +405875,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lateral rectus extra-ocular muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (levator palpebrae superioris) AnnotationAssertion(rdfs:label "levator palpebrae superioris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405580,7 +405892,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ciliary muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -405603,7 +405915,7 @@ AnnotationAssertion( "WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure") AnnotationAssertion( "constricts iris") AnnotationAssertion(rdfs:label "sphincter pupillae") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405620,7 +405932,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina") AnnotationAssertion(rdfs:label "dilatator pupillae") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405632,7 +405944,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lingual artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405647,7 +405959,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Check grouping with amphibian structure of the same name") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sublingual artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405659,7 +405971,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "facial artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405669,7 +405981,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "occipital artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405680,7 +405992,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "maxillary artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/39/Gray510.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/39/Gray510.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405703,7 +406015,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "buccal artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405715,7 +406027,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ophthalmic artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405725,7 +406039,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "central retinal artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405738,7 +406052,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (coronary artery) AnnotationAssertion(rdfs:label "coronary artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405749,7 +406063,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lacrimal artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405761,7 +406075,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dorsal nasal artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png"^^xsd:anyURI) SubClassOf( ) # Class: (posterior communicating artery) @@ -405769,7 +406083,7 @@ SubClassOf( ) AnnotationAssertion( "todo - verify ZFA link: An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery") AnnotationAssertion(rdfs:label "posterior communicating artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405783,7 +406097,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (carotid body) AnnotationAssertion(rdfs:label "carotid body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray1186.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray1186.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405810,7 +406124,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "placement of the ZFA class here is dubious") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thoracic duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405820,7 +406134,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "basilar artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405833,7 +406147,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior cerebellar artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405846,7 +406160,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "posterior cerebral artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405872,7 +406186,7 @@ AnnotationAssertion( "venous") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405883,7 +406197,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In humans A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]") AnnotationAssertion(rdfs:label "hepatic portal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -405894,7 +406210,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "dorsal aorta in Kardong") AnnotationAssertion(rdfs:label "celiac artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405908,7 +406224,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check subclasses") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "transverse sinus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405918,7 +406234,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "oculomotor nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405933,7 +406249,7 @@ AnnotationAssertion( "Homologous trochlear nerves are found in all jawed vertebrates") AnnotationAssertion( "The human trochlear nerve is derived from the basal plate of the embryonic midbrain.") AnnotationAssertion(rdfs:label "trochlear nerve") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/33/Trochlear_nerve.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/33/Trochlear_nerve.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405943,7 +406259,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "trigeminal nerve") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -405957,7 +406273,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "abducens nerve") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/29/Abducens_nerve1.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/29/Abducens_nerve1.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405970,7 +406286,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "facial nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Cranial_nerve_VII.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Cranial_nerve_VII.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405985,7 +406301,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vestibulocochlear nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -405998,7 +406314,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "glossopharyngeal nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406013,7 +406329,7 @@ AnnotationAssertion( ) AnnotationAssertion( "we use a broad definition of this cranial nerve that encompasses the amphibian predecessor of true amniote hypoglossal nerves") AnnotationAssertion(rdfs:label "hypoglossal nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray794.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray794.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406027,8 +406343,10 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - add class 'pulmonary artery tree organ'") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right pulmonary artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406040,8 +406358,10 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - add class 'pulmonary artery tree organ'") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left pulmonary artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406052,7 +406372,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "facial vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406063,7 +406383,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebral vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Gray568.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Gray568.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406074,7 +406394,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (triceps surae) AnnotationAssertion(rdfs:label "triceps surae") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406084,7 +406404,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tibialis posterior) AnnotationAssertion(rdfs:label "tibialis posterior") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406113,7 +406433,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider renaming this 'trigeminal ganglion complex'. The complex may be fused (amniotes) partially fused (xenopus) or separate (sharks)") AnnotationAssertion(rdfs:label "trigeminal ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406126,7 +406446,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "occipital bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406141,7 +406461,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sphenoid bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406159,7 +406479,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In many mammals, as in humans, the petrosal, ectotympanic and squamosal bones synostose to form the temporal bone + styloid process") AnnotationAssertion(rdfs:label "temporal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406171,7 +406491,7 @@ AnnotationAssertion( "ethmoidal") AnnotationAssertion( "todo - homology e.g. mesethmoid of teleost") AnnotationAssertion(rdfs:label "ethmoid bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -406186,7 +406506,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species[ISBN 0-03-910284-X]") AnnotationAssertion(rdfs:label "lacrimal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -406204,7 +406524,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X)") AnnotationAssertion(rdfs:label "nasal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -406221,7 +406541,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "Fusion of dermopalatine+autopalatine.") AnnotationAssertion(rdfs:label "palatine bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/44/Gray996.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/44/Gray996.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -406246,7 +406566,7 @@ AnnotationAssertion( "In humans it also articulates with the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders [Wikipedia:Zygomatic_bone, Wikipedia:Jugal_bone]") AnnotationAssertion( "vHOG says is homologous to infraorbital 3.") AnnotationAssertion(rdfs:label "jugal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -406267,7 +406587,7 @@ AnnotationAssertion( "mandibular") AnnotationAssertion( "'mandible' also refers to either the upper OR lower part of the beak in birds") AnnotationAssertion(rdfs:label "mandible") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406276,7 +406596,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hyoid bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406287,7 +406607,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5.") AnnotationAssertion(rdfs:label "auditory ossicle bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b0/Illu_auditory_ossicles.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b0/Illu_auditory_ossicles.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406301,7 +406621,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "'This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.' Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357?[VHOG].") AnnotationAssertion(rdfs:label "stapes bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406317,7 +406637,7 @@ DisjointClasses( ) AnnotationAssertion(rdfs:label "incus bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406330,7 +406650,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "malleus bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406344,7 +406664,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "auricular") AnnotationAssertion(rdfs:label "ear") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406355,7 +406675,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (external ear) AnnotationAssertion(rdfs:label "external ear") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Gray907.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Gray907.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406371,7 +406691,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( "TODO - check FMA") AnnotationAssertion(rdfs:label "basioccipital bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c4/Parsbasilaris%28young%29.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c4/Parsbasilaris%28young%29.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406386,7 +406706,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check FMA - currently we place this as both of a zone of bone organ and an (endochondral) bone. Removed endochondral bone classification for now, violates disjointness axiom") AnnotationAssertion(rdfs:label "exoccipital bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray131.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray131.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406402,7 +406722,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "derivative of prootic and opisthotic") AnnotationAssertion(rdfs:label "petrous part of temporal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406412,8 +406732,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider separate class for squamosal OR making squamosal the primary label") AnnotationAssertion( "The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles") AnnotationAssertion(rdfs:label "squamous part of temporal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray144.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray144.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -406439,7 +406759,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "resolve facial VII vs geniculate (see EHDAA2)") AnnotationAssertion(rdfs:label "geniculate ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406464,7 +406784,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "eyelashes protect the eye from debris and are sensitive to touch, thus providing a warning that an object is near the eye (which is then closed reflexively)") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "eyelash") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/N2_Human_eye.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/N2_Human_eye.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406495,7 +406815,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "We follow AAO in making this part of the nasal skeleton") AnnotationAssertion(rdfs:label "nasal septum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray854.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray854.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406508,7 +406828,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "define the boundaries of this cavity for a variety of species and check that parthood relations are not too strong.") AnnotationAssertion(rdfs:label "nasal cavity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406534,7 +406854,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "See notes for jaw w.r.t skeletal element vs subdivision of head.") AnnotationAssertion(rdfs:label "upper jaw region") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406548,7 +406868,7 @@ DisjointClasses( ) AnnotationAssertion(rdfs:comment "See notes for jaw w.r.t skeletal element vs subdivision of head") AnnotationAssertion(rdfs:label "lower jaw region") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406563,7 +406883,7 @@ AnnotationAssertion( "In humans the upper and lower eyelid consists of the following layers, starting anteriorly: (1) skin, (2) a layer of subcutaneous connective tissue, (3) a layer of striated muscle fibres of the orbicularis muscle, (4) a layer of submuscular connective tissue, (5) a fibrous layer, including the tarsal plates, (6) a layer of smooth muscle, (7) the palpebral conjunctiva.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "eyelid") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406574,13 +406894,13 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (upper eyelid) AnnotationAssertion(rdfs:label "upper eyelid") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg"^^xsd:anyURI) SubClassOf( ) # Class: (lower eyelid) AnnotationAssertion(rdfs:label "lower eyelid") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg"^^xsd:anyURI) SubClassOf( ) # Class: (cranial ganglion) @@ -406596,7 +406916,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "oculomotor nuclear complex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406607,8 +406927,8 @@ AnnotationAssertion( "present in mammals and some reptiles. A similar structure is found in crocodilians, but, in most other tetrapods, the oral and nasal cavities are not truly separate. The secondary palate is formed by bilateral medial extensions of maxillary processes. The extensions (palatine processes) meet at the midline, merging dorsally with nasal septum and rostrally with primary palate. The secondary palate (hard palate) separates nasal and oral cavities. Caudal extension of the secondary palate into the pharynx, forms a soft palate which divides the rostral pharynx into dorsal (nasopharynx) and ventral (oropharynx) chamber.") AnnotationAssertion( "separates respiratory and oral passages") AnnotationAssertion(rdfs:label "secondary palate") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Pig_snout_sagittal_cut.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Pig_snout_sagittal_cut.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406621,7 +406941,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mesencephalic nucleus of trigeminal nerve) AnnotationAssertion(rdfs:label "mesencephalic nucleus of trigeminal nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -406633,7 +406953,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cochlear nucleus) AnnotationAssertion(rdfs:label "cochlear nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406649,7 +406969,7 @@ AnnotationAssertion( "Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods") AnnotationAssertion( "The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions") AnnotationAssertion(rdfs:label "tongue") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Tongue.agr.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Tongue.agr.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406666,7 +406986,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sphenoidal sinus) AnnotationAssertion(rdfs:label "sphenoidal sinus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray856.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray856.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406692,7 +407012,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In humans, saste buds may be found on the tongue, soft palatte, epiglottis and upper pharynx. In other species they may be found in more unusual places, such as the trunk, or on the barbels or fins of fish.") AnnotationAssertion( "arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN:1607950324 (todo - request cell terms from CL)") AnnotationAssertion(rdfs:label "taste bud") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -406708,7 +407028,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "nasopharyngeal") AnnotationAssertion( "In humans - in front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane") AnnotationAssertion(rdfs:label "nasopharynx") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406718,7 +407038,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "oropharyngeal") AnnotationAssertion(rdfs:label "oropharynx") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406747,7 +407067,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pharyngeal tonsil) AnnotationAssertion(rdfs:label "pharyngeal tonsil") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/be/Gray994-adenoid.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/be/Gray994-adenoid.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406757,7 +407077,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "velar") AnnotationAssertion(rdfs:label "soft palate") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406769,7 +407089,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion(rdfs:comment "seeAlso - bifid uvula and cleft palate") AnnotationAssertion(rdfs:label "palatine uvula") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406793,7 +407113,7 @@ AnnotationAssertion( "The term submandibular as used in humans, is incorrect due the difference in topography of these structures[http://www.avdc.org]") AnnotationAssertion(rdfs:comment "lobular, sexually dimorphic in mouse") AnnotationAssertion(rdfs:label "submandibular gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406805,7 +407125,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "laryngeal") AnnotationAssertion(rdfs:label "larynx") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406815,7 +407137,11 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (thyroid cartilage) AnnotationAssertion(rdfs:label "thyroid cartilage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -406824,6 +407150,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "laryngeal cartilage") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406837,7 +407165,11 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (arytenoid cartilage) AnnotationAssertion(rdfs:label "arytenoid cartilage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406846,6 +407178,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (epiglottic cartilage) AnnotationAssertion(rdfs:label "epiglottic cartilage") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -406873,7 +407209,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (secondary nodular lymphoid tissue) AnnotationAssertion(rdfs:label "secondary nodular lymphoid tissue") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Keimzentrum.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Keimzentrum.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406923,7 +407259,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal") AnnotationAssertion(rdfs:label "lacrimal apparatus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406950,7 +407286,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "current classification under substance of tooth may be turned into taxon GCI (e.g. sharks have enamel in dermal denticles)") AnnotationAssertion(rdfs:label "enamel") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Enamelorgan11-17-05.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Enamelorgan11-17-05.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -406966,14 +407302,14 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( "Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W]") AnnotationAssertion(rdfs:label "cementum") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (dental pulp) AnnotationAssertion(rdfs:label "dental pulp") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407002,7 +407338,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (periodontium) AnnotationAssertion(rdfs:label "periodontium") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407012,7 +407348,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vagus nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407025,7 +407361,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (frontal sinus) AnnotationAssertion(rdfs:label "frontal sinus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg"^^xsd:anyURI) SubClassOf( ) # Class: (future foramen cecum) @@ -407039,7 +407375,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Turbinals are only ossified in birds and derived synapsids.") AnnotationAssertion(rdfs:label "turbinate bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray153.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray153.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407056,7 +407392,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( "In humans, the dental papilla appears after 8-10 weeks intra uteral life") AnnotationAssertion(rdfs:label "odontogenic papilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray1011.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray1011.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407069,7 +407405,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "maxillary sinus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray1199.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray1199.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407080,7 +407416,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion(rdfs:comment "This structure regresses in most males") AnnotationAssertion(rdfs:label "mammary duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407093,7 +407429,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anterior chamber of eyeball) AnnotationAssertion(rdfs:label "anterior chamber of eyeball") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407102,7 +407438,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "The posterior chamber should not be confused with vitreous chamber.") AnnotationAssertion(rdfs:label "posterior chamber of eyeball") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407112,7 +407448,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check child terms, isa vs partof. See also MA:0001284 ! tunica vasculosa plexus") AnnotationAssertion( "uveal") AnnotationAssertion(rdfs:label "uvea") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -407137,7 +407473,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pupil) AnnotationAssertion(rdfs:label "pupil") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Eye_iris.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Eye_iris.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407148,7 +407484,7 @@ AnnotationAssertion( "In Humans: It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei") AnnotationAssertion( "In zebrafish: nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals") AnnotationAssertion(rdfs:label "corneal epithelium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407167,7 +407503,7 @@ AnnotationAssertion( "Seko et al demonstrate chondrogenic potential and identify this as connective tissue[DOI:10.1371/journal.pone.0003709].") AnnotationAssertion(rdfs:comment "Disease notes: implicated in rheumatoid arthritis.") AnnotationAssertion(rdfs:label "sclera") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407192,7 +407528,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ciliary body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407207,7 +407543,7 @@ AnnotationAssertion( ) AnnotationAssertion( "choroidal") AnnotationAssertion(rdfs:label "optic choroid") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407220,7 +407556,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (substantia propria of cornea) AnnotationAssertion(rdfs:label "substantia propria of cornea") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407244,7 +407580,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (iris stroma) AnnotationAssertion(rdfs:label "iris stroma") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407255,7 +407591,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "spinal nerve") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407274,7 +407610,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pigmented layer of retina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407289,7 +407625,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "optic disc") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray879.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray879.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407302,8 +407638,8 @@ AnnotationAssertion( ) AnnotationAssertion( "See https://github.com/obophenotype/mouse-anatomy-ontology/issues/6") AnnotationAssertion(rdfs:label "cranial nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/18/Brain_human_normal_inferior_view_with_labels_en-2.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/84/Brain_human_normal_inferior_view_with_labels_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/18/Brain_human_normal_inferior_view_with_labels_en-2.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/84/Brain_human_normal_inferior_view_with_labels_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407319,7 +407655,7 @@ AnnotationAssertion( "The fovea is also a pit in the surface of the retinas of many types of fish, reptiles, and birds. Among mammals, it is found only in simian primates. The retinal fovea takes slightly different forms in different types of animals. For example, in primates, cone photoreceptors line the base of the foveal pit, the cells that elsewhere in the retina form more superficial layers having been displaced away from the foveal region during late fetal and early postnatal life. Other foveae may show only a reduced thickness in the inner cell layers, rather than an almost complete absence") AnnotationAssertion( "high acuity vision") AnnotationAssertion(rdfs:label "fovea centralis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407331,7 +407667,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (photoreceptor layer of retina) AnnotationAssertion(rdfs:label "photoreceptor layer of retina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407380,7 +407716,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ganglionic layer of retina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407413,7 +407749,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "http://neurolex.org/wiki/Nlx_anat_1005032 appears to be retired") AnnotationAssertion(rdfs:label "inner plexiform layer of retina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407427,7 +407763,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (aqueous humor of eyeball) AnnotationAssertion(rdfs:label "aqueous humor of eyeball") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407437,7 +407773,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vitreous humor) AnnotationAssertion(rdfs:label "vitreous humor") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407447,7 +407783,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "distinciton between body and humor requires more work. These may be merged in future. Note that FMA includes the hyaloid canal as part of the vitreous body") AnnotationAssertion(rdfs:label "vitreous body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -407474,7 +407810,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anterior segment of eyeball) AnnotationAssertion(rdfs:label "anterior segment of eyeball") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407484,7 +407820,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (posterior segment of eyeball) AnnotationAssertion(rdfs:label "posterior segment of eyeball") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407506,7 +407842,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs). [Wikipedia:Capsule_of_lens") AnnotationAssertion(rdfs:label "capsule of lens") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407522,7 +407858,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (autonomic ganglion) AnnotationAssertion(rdfs:label "autonomic ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407532,7 +407868,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sympathetic ganglion) AnnotationAssertion(rdfs:label "sympathetic ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407545,7 +407881,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "paravertebral ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407554,7 +407890,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (parasympathetic ganglion) AnnotationAssertion(rdfs:label "parasympathetic ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407585,7 +407921,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "conjunctival") AnnotationAssertion(rdfs:label "conjunctiva") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407617,8 +407953,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "check superclass - nerve vs collection of fibers vs junction; note that FMA also has 'brachial autonomic nerve plexus'") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brachial nerve plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray808.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c9/Brachial_plexus_color.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray808.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c9/Brachial_plexus_color.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407626,7 +407962,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lumbosacral nerve plexus) AnnotationAssertion(rdfs:label "lumbosacral nerve plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray822.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray822.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407644,7 +407980,7 @@ AnnotationAssertion( "In humans, they are situated in the upper, outer portion of each orbit") AnnotationAssertion( "Innervation is highly complex and species-specific") AnnotationAssertion(rdfs:label "lacrimal gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407662,7 +407998,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( "in mice, meibomian gland development is initiated around E18.5 with the formation of an epithelial placode and mesenchymal condensation, similar to that observed in hair follicle development; invagination of the epithelium into the developing mesenchyme then continues from birth to about P3 with initial branching of the epithelial cord detected at P5; by P8 the developing meibomian gland shows extensive ductal branching and the formation of distinct acini with mature meibomian glands present by P15 or eyelid opening[PMID:20664693]") AnnotationAssertion(rdfs:label "tarsal gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407673,7 +408009,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (palpebral fissure) AnnotationAssertion(rdfs:label "palpebral fissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407687,7 +408023,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check if all sweat glands are epidermal - see EMAPA:29743") AnnotationAssertion( "In humans a system of apocrine - and merocrine sweat glands is the main method of cooling. Many other mammals rely on panting or other means as a primary source of cooling, but still use sweat glands to aid in body temperature regulation") AnnotationAssertion(rdfs:label "sweat gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407703,7 +408039,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "sebaceous glands are also found in glabrous areas of eyelids, nose, penis, labia minora and nipples, and do not always secrete into hair follices. This causes some confusion in classification. In addition some structures, such as preputial glands are sometimes called 'modified' sebaceous glands, implying a non-subclass relationship. we follow MP and MA in keeping this class generic and creating a distinct subclass for sebaceuous glands of the skin. The FMA class may be better placed under this subclass.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sebaceous gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/49/HairFollicle.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/49/HairFollicle.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -407717,7 +408053,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (nasal cartilage) AnnotationAssertion(rdfs:label "nasal cartilage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -407739,7 +408075,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Arise as epithelial lined diverticula of the lining of the nasal cavity. The extent of sinus development varies with species, most of the development occurs postnatally") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "paranasal sinus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407771,7 +408107,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "FMA has a 3-level breakdown of jaws into: region, jaw (skeleton+gums), skeleton.") AnnotationAssertion( "gingival") AnnotationAssertion(rdfs:label "gingiva") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407797,7 +408133,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "The mouse parotid, exorbital lacrimal gland and exocrine pancreas have similar histological appearances[ISBN:0123813611]") AnnotationAssertion(rdfs:label "parotid gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -407809,7 +408145,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sublingual gland) AnnotationAssertion(rdfs:label "sublingual gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -407819,8 +408155,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "labial") AnnotationAssertion(rdfs:label "lip") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/90/Lips.JPG"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/90/Lips.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) @@ -407832,7 +408168,7 @@ DisjointClasses( ObjectSomeValues # Class: (upper lip) AnnotationAssertion(rdfs:label "upper lip") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407842,7 +408178,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lower lip) AnnotationAssertion(rdfs:label "lower lip") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407880,7 +408216,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved.") AnnotationAssertion(rdfs:label "bony labyrinth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray920.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray920.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407891,7 +408227,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "detects angular acceleration") AnnotationAssertion(rdfs:label "semicircular canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407902,7 +408238,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "detects angular acceleration") AnnotationAssertion(rdfs:label "anterior semicircular canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) SubClassOf( ) # Class: (posterior semicircular canal) @@ -407910,14 +408246,14 @@ SubClassOf( "verify AAO") AnnotationAssertion( "detects angular acceleration") AnnotationAssertion(rdfs:label "posterior semicircular canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) SubClassOf( ) # Class: (lateral semicircular canal) AnnotationAssertion( "detects angular acceleration") AnnotationAssertion(rdfs:label "lateral semicircular canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) SubClassOf( ) # Class: (cochlea) @@ -407926,8 +408262,8 @@ AnnotationAssertion( "The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: 'In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)'") AnnotationAssertion( "the cochlea is coiled in most mammals, monotremes being the exceptions.") AnnotationAssertion(rdfs:label "cochlea") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407944,7 +408280,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (internal ear) AnnotationAssertion(rdfs:label "internal ear") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -407970,7 +408306,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (membranous labyrinth) AnnotationAssertion(rdfs:label "membranous labyrinth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408004,7 +408340,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "otolymphic") AnnotationAssertion(rdfs:label "endolymph") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408020,14 +408356,14 @@ SubClassOf( "XAO/AAO to be checked - see https://github.com/seger/aao/issues/5") AnnotationAssertion(rdfs:label "saccule of membranous labyrinth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg"^^xsd:anyURI) SubClassOf( ) # Class: (cochlear duct of membranous labyrinth) AnnotationAssertion( "TODO - check cochlear duct vs cochlear aqueduct vs scala media") AnnotationAssertion(rdfs:label "cochlear duct of membranous labyrinth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408051,7 +408387,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (posterior semicircular duct) AnnotationAssertion(rdfs:label "posterior semicircular duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408059,7 +408395,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lateral semicircular duct) AnnotationAssertion(rdfs:label "lateral semicircular duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408068,7 +408404,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "endolymphatic") AnnotationAssertion(rdfs:label "endolymphatic duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408083,8 +408419,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (scala vestibuli) AnnotationAssertion(rdfs:label "scala vestibuli") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408094,7 +408430,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (scala tympani) AnnotationAssertion(rdfs:label "scala tympani") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408130,7 +408466,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cerebral hemisphere) AnnotationAssertion(rdfs:label "cerebral hemisphere") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -408142,7 +408478,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "frontal cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray729.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray729.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408152,7 +408488,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Boundary notes: It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe. [Wikipedia:Temporal_lobe]") AnnotationAssertion(rdfs:label "temporal lobe") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408160,7 +408496,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "parietal lobe") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray726_parietal_lobe.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray726_parietal_lobe.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408168,7 +408504,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (caudate nucleus) AnnotationAssertion(rdfs:label "caudate nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408181,7 +408517,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "check - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "putamen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408194,7 +408530,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "pallidal") AnnotationAssertion(rdfs:comment "BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus") AnnotationAssertion(rdfs:label "globus pallidus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408208,7 +408544,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "amygdalar") AnnotationAssertion(rdfs:label "amygdala") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Amyg.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Amyg.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408218,7 +408554,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (island of Calleja) AnnotationAssertion(rdfs:label "island of Calleja") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Islands_of_Calleja_Rat.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Islands_of_Calleja_Rat.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408228,7 +408564,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The ventral striatopallidal complex in birds corresponds closely to its counterpart in mammals, with a nucleus accumbes present in the rostral telenceaphalon. Note that in birds, a region previously called the nucleus accumbens is now recognized as the lateral part of the bed nucleus of stria terminalis.[ISBN:0471888893]") AnnotationAssertion(rdfs:label "nucleus accumbens") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408238,7 +408574,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (olfactory tubercle) AnnotationAssertion(rdfs:label "olfactory tubercle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408249,7 +408585,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "phrenic nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray806.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray806.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408261,7 +408597,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development") AnnotationAssertion(rdfs:label "dentate gyrus of hippocampal formation") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408270,7 +408606,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerebral hemisphere") AnnotationAssertion( "choroidal") AnnotationAssertion(rdfs:label "choroid plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -408282,14 +408618,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (internal capsule of telencephalon) AnnotationAssertion(rdfs:label "internal capsule of telencephalon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lateral olfactory stria) AnnotationAssertion(rdfs:label "lateral olfactory stria") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408306,7 +408642,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "prosencephalic") AnnotationAssertion(rdfs:label "forebrain") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408321,7 +408657,7 @@ AnnotationAssertion( ) AnnotationAssertion( "mesencephalic") AnnotationAssertion(rdfs:label "midbrain") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408355,7 +408691,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "diencephalic") AnnotationAssertion(rdfs:label "diencephalon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408369,7 +408705,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA].") AnnotationAssertion(rdfs:label "metencephalon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408380,7 +408716,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medulla oblongata") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408394,7 +408730,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "thalamic") AnnotationAssertion(rdfs:label "dorsal plus ventral thalamus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Brain_chrischan_thalamus.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Brain_chrischan_thalamus.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408407,7 +408743,9 @@ AnnotationAssertion( ) AnnotationAssertion( "hypothalamic") AnnotationAssertion(rdfs:label "hypothalamus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408420,7 +408758,7 @@ AnnotationAssertion( ) AnnotationAssertion( "epithalamic") AnnotationAssertion(rdfs:label "epithalamus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Epithalamus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Epithalamus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408459,7 +408797,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "habenular") AnnotationAssertion(rdfs:label "habenula") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408471,19 +408809,21 @@ AnnotationAssertion( "epiphysial") AnnotationAssertion( "lobulated in humans, homogeneous in mouse. Calcifies with age in humans.") AnnotationAssertion(rdfs:label "pineal body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf(Annotation(rdfs:comment "EDITOR_NOTE add secretion") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (subthalamic nucleus) AnnotationAssertion(rdfs:label "subthalamic nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Basal-ganglia-coronal-sections-large.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Basal-ganglia-coronal-sections-large.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408495,7 +408835,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "optic tract") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408508,7 +408850,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (habenular commissure) AnnotationAssertion(rdfs:label "habenular commissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -408528,7 +408870,7 @@ AnnotationAssertion( "The FMA class represents an individule lobe. The nipple is not a part") AnnotationAssertion( "The MA class represents a composite structure, including the nipple, fat, connective tissue, smooth muscle as parts") AnnotationAssertion(rdfs:label "mammary gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -408611,7 +408953,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (paraventricular nucleus of thalamus) AnnotationAssertion(rdfs:label "paraventricular nucleus of thalamus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408643,7 +408985,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lateral geniculate body) AnnotationAssertion(rdfs:label "lateral geniculate body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408652,7 +408994,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (medial geniculate body) AnnotationAssertion(rdfs:label "medial geniculate body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408664,15 +409006,15 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "Located in the hypothalamus in amniotes[PMC4038951]") AnnotationAssertion(rdfs:label "preoptic area") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (supraoptic nucleus) AnnotationAssertion(rdfs:label "supraoptic nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408683,8 +409025,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (paraventricular nucleus of hypothalamus) AnnotationAssertion(rdfs:label "paraventricular nucleus of hypothalamus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ef/PVNss.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ef/PVNss.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408694,7 +409036,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "'tegmentum' is used generically for the ventral part of the brainstem (ISBN:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum") AnnotationAssertion(rdfs:label "midbrain tegmentum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408722,7 +409064,9 @@ AnnotationAssertion( "The term SC is used when discussing mammals, and OT for other vertebrates[WP]") AnnotationAssertion(rdfs:comment "). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex.") AnnotationAssertion(rdfs:label "superior colliculus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -408734,7 +409078,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior colliculus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408746,7 +409092,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "in animals without a significant corticospinal tract, gait is mainly controlled by the red nucleus.") AnnotationAssertion(rdfs:label "red nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -408775,7 +409123,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (neocortex) AnnotationAssertion(rdfs:label "neocortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408803,7 +409151,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider merging with BA27") AnnotationAssertion(rdfs:label "presubiculum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Brodmann_Cytoarchitectonics_27.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Brodmann_Cytoarchitectonics_27.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408814,7 +409162,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "hippocampal") AnnotationAssertion( "Non-mammalian species do not have a brain structure that looks like the mammalian hippocampus, but they have one that is considered homologous to it. The hippocampus, as pointed out above, is essentially the medial edge of the cortex. Only mammals have a fully developed cortex, but the structure it evolved from, called the pallium, is present in all vertebrates, even the most primitive ones such as the lamprey or hagfish. The pallium is usually divided into three zones: medial, lateral, and dorsal. The medial pallium forms the precursor of the hippocampus. It does not resemble the hippocampus visually, because the layers are not warped into an S shape or enwrapped by the dentate gyrus, but the homology is indicated by strong chemical and functional affinities. There is now evidence that these hippocampal-like structures are involved in spatial cognition in birds, reptiles, and fish. In birds, the correspondence is sufficiently well established that most anatomists refer to the medial pallial zone as the 'avian hippocampus'. The story for fish is more complex. In teleost fish (which make up the great majority of existing species), the forebrain is distorted in comparison to other types of vertebrates: most neuroanatomists believe that the teleost forebrain is essentially everted, like a sock turned inside-out, so that structures that lie in the interior, next to the ventricles, for most vertebrates, are found on the outside in teleost fish, and vice versa. One of the consequences of this is that the medial pallium ('hippocampal' zone) of a typical vertebrate is thought to correspond to the lateral pallium of a typical fish. Several types of fish (particularly goldfish) have been shown experimentally to have strong spatial memory abilities, even forming 'cognitive maps' of the areas they inhabit.[WP]") AnnotationAssertion(rdfs:label "Ammon's horn") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray739-emphasizing-hippocampus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray739-emphasizing-hippocampus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -408867,7 +409215,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located. [Wikipedia:White_pulp]") AnnotationAssertion(rdfs:label "white pulp of spleen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -408935,7 +409283,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "seminal") AnnotationAssertion( "Note that in this ontology, semen is defined as the sum of sperm and seminal fluid, where seminal fluid is defined in taxonomically generic way (see comments for UBERON:0006530).") AnnotationAssertion(rdfs:label "semen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/40/Human_semen_in_petri_dish2.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/40/Human_semen_in_petri_dish2.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409033,7 +409381,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "venule") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409043,7 +409391,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (arteriole) AnnotationAssertion(rdfs:label "arteriole") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409056,7 +409404,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider adopting the EMAPA superclass 'vascular element', which includes microvasculature (e.g. capillaries), vascular plexus") AnnotationAssertion( "annelids have blood vessels, but this class is not applicable to annelids.") AnnotationAssertion(rdfs:label "blood vessel") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409076,7 +409424,7 @@ AnnotationAssertion( "capillaries lack tunica media and tunica adventitia; only the endothelial wall of the tunica intima belongs") AnnotationAssertion(rdfs:label "capillary") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/2186") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/A_red_blood_cell_in_a_capillary,_pancreatic_tissue_-_TEM.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/A_red_blood_cell_in_a_capillary,_pancreatic_tissue_-_TEM.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409086,7 +409434,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "crypt of Lieberkuhn") AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409106,7 +409454,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "corneal endothelium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409136,8 +409484,9 @@ AnnotationAssertion( "Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN:0073040584 (Vertebrates, Kardong)]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: DOI:10.1002/jmor.11011") AnnotationAssertion(rdfs:comment "Marsupials possess only a rudimentary yolk-type placenta, with reduced nutrient and oxygen exchanging capabilities.") AnnotationAssertion(rdfs:label "placenta") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Placenta.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f1/Placenta.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/66/Placenta.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f1/Placenta.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409159,26 +409508,26 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (superior cervical ganglion) AnnotationAssertion(rdfs:label "superior cervical ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png"^^xsd:anyURI) SubClassOf( ) # Class: (middle cervical ganglion) AnnotationAssertion(rdfs:label "middle cervical ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png"^^xsd:anyURI) SubClassOf( ) # Class: (cervical ganglion) AnnotationAssertion(rdfs:label "cervical ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png"^^xsd:anyURI) SubClassOf( ) # Class: (papillary layer of dermis) AnnotationAssertion( "todo - check tissue composition") AnnotationAssertion(rdfs:label "papillary layer of dermis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409199,8 +409548,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (hyaline cartilage tissue) AnnotationAssertion(rdfs:label "hyaline cartilage tissue") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray292.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray292.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409211,7 +409560,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "fibrocartilaginous") AnnotationAssertion(rdfs:comment "The white fibrocartilages admit of arrangement into four groups-interarticular, connecting, circumferential, and stratiform -- WP. EDITOR NOTE: TODO add mineralized") AnnotationAssertion(rdfs:label "fibrocartilage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray295.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray295.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409220,7 +409569,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (elastic cartilage tissue) AnnotationAssertion(rdfs:label "elastic cartilage tissue") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray904.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray904.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409230,7 +409579,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Genes: V1Rs, Trpc2 present in lamprey") AnnotationAssertion(rdfs:label "olfactory epithelium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409250,7 +409599,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sternocostal joint) AnnotationAssertion(rdfs:label "sternocostal joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409293,7 +409642,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cortex of lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409303,6 +409652,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medulla of lymph node") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409312,7 +409663,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cardiac nerve plexus) AnnotationAssertion(rdfs:label "cardiac nerve plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409322,7 +409673,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thoracodorsal artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409334,7 +409685,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung[WP]") AnnotationAssertion(rdfs:label "pulmonary artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409353,7 +409706,11 @@ AnnotationAssertion( "provides some protection from trauma and damage.") AnnotationAssertion( "The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly).[Wikipedia:Kidney_capsule]") AnnotationAssertion(rdfs:label "kidney capsule") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409366,7 +409723,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pulmonary vein") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409380,14 +409739,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "portal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (accessory XI nerve) AnnotationAssertion(rdfs:label "accessory XI nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409398,7 +409757,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (gray matter) AnnotationAssertion(rdfs:label "gray matter") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409408,7 +409767,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "In some species, parcellations of lobes are not well defined or at all, and therefore the occipital lobe could refer to the most posterior mammalian cerebral cortex.") AnnotationAssertion(rdfs:label "occipital lobe") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray727_occipital_lobe.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray727_occipital_lobe.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409420,7 +409779,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Consider splitting insular cortex from insular lobe. See https://github.com/obophenotype/uberon/issues/412") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "insula") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray731.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray731.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409460,8 +409819,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "some oral epitehlium also has cornified layer / stratum corneum") AnnotationAssertion(rdfs:label "stratum corneum of epidermis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Skinlayers.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e4/Epidermal_layers.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Skinlayers.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/e/e4/Epidermal_layers.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409473,7 +409832,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "rhombencephalic") AnnotationAssertion(rdfs:label "hindbrain") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409498,7 +409857,7 @@ AnnotationAssertion( "Nipple being part_of mammary gland is due to a practical modelling in uberon that treats mammary gland as including adnexa. A GCI asserts that nipple is part of the breast in humans. For discussion of this, please refer to https://github.com/obophenotype/uberon/issues/1873.") AnnotationAssertion(rdfs:label "nipple") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/1873") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/59/Female_nipple_profile.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/59/Female_nipple_profile.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409518,8 +409877,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "areolar") AnnotationAssertion(rdfs:label "areola") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f4/Brustwarze.JPG"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/ad/Female_Areola.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f4/Brustwarze.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/ad/Female_Areola.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409537,7 +409896,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (suprachiasmatic nucleus) AnnotationAssertion(rdfs:label "suprachiasmatic nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409557,7 +409916,7 @@ AnnotationAssertion( "cerebellar") AnnotationAssertion( "The absence of a cerebellum in hagfishes and lampreys appears to be the only exception [to the rule that vertebrates possess the same number of brain divisions]. Both hagfishes and lampreys do possess a thin band of cells located medial to the lateral line centers of the medulla (Ronan and Northcutt, 1998), which has been interpreted as a primitive cerebellum (Larsell, 1967), but more recent experimental studies (Kishida et al., 1987; Weigle and Northcutt, 1998) fail to support Larsell's claim[http://icb.oxfordjournals.org/content/42/4/743.full]") AnnotationAssertion(rdfs:label "cerebellum") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409573,7 +409932,9 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( "TODO - In BTO and NIF, part of basal ganglion which is part of telencephalon - but this is inconsistent with being part of midbrain, if these are spatially disjoint, as in ABA") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "substantia nigra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409587,7 +409948,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung.") AnnotationAssertion(rdfs:label "bronchial artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray1032.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray1032.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409609,8 +409970,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (thyroid gland) AnnotationAssertion(rdfs:label "thyroid gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a3/Illu_thyroid_parathyroid.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Illu_endocrine_system.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a3/Illu_thyroid_parathyroid.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Illu_endocrine_system.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409639,6 +410000,10 @@ AnnotationAssertion( "Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP]") AnnotationAssertion(rdfs:label "lung") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/701"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409660,7 +410025,7 @@ AnnotationAssertion( ) AnnotationAssertion( "vascular") AnnotationAssertion(rdfs:label "vasculature") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409705,7 +410070,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (zona glomerulosa of adrenal gland) AnnotationAssertion(rdfs:label "zona glomerulosa of adrenal gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409715,7 +410080,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (zona fasciculata of adrenal gland) AnnotationAssertion(rdfs:label "zona fasciculata of adrenal gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409725,7 +410090,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (zona reticularis of adrenal gland) AnnotationAssertion(rdfs:label "zona reticularis of adrenal gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409736,7 +410101,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior suprarenal artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409756,7 +410121,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "the main ciliary ganglion (typically just called the ciliary ganglion) is differentiated from the accessory by connection to the oculomotor nerve.") AnnotationAssertion(rdfs:label "main ciliary ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Augennerven.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Augennerven.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409768,8 +410133,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (submandibular ganglion) AnnotationAssertion(rdfs:label "submandibular ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/83/Gray778.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/83/Gray778.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409779,7 +410144,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (femoral artery) AnnotationAssertion(rdfs:label "femoral artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray546.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray546.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409798,7 +410163,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt. JB: Patterning makes the cushions lay down connective tissue in three domains that force out the local endothelial lining and so the leaflets form") AnnotationAssertion(rdfs:label "endocardial cushion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409814,7 +410179,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In fish, receives venous blood from the systemic circulation through paired hepatic veins, anterior jugular veins and Cuvierian ducts[PMID:20735616]") AnnotationAssertion( "In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis. The sinus venosus also forms the SA node and the coronary sinus. In the embryo, the thin walls of the sinus venosus are connected below with the right ventricle, and medially with the left atrium, but are free in the rest of their extent. It receives blood from the vitelline vein, umbilical vein and common cardinal vein. It originally starts as a paired structure but shifts towards associating only with the right atrium as the embryonic heart develops. The left portion shrinks in size and eventually forms the coronary sinus and oblique vein of the left atrium, whereas the right part becomes incorporated into the right atrium to form the sinus venarmu") AnnotationAssertion(rdfs:label "sinus venosus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409825,7 +410190,7 @@ DisjointClasses( "Paired in gnathostomes; with only a vestige of the right duct in the adult hagfish (21) and the left duct atrophying at metamorphosis in the lamprey (22)[PMID:20959416, S1]") AnnotationAssertion(rdfs:label "common cardinal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray477.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray477.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409843,7 +410208,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "umbilical vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409855,7 +410221,7 @@ AnnotationAssertion( ) AnnotationAssertion( "dermal") AnnotationAssertion(rdfs:label "dermis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/EpidermisPainted.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/EpidermisPainted.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409875,7 +410241,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "urachal") AnnotationAssertion(rdfs:label "urachus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -409912,7 +410278,7 @@ AnnotationAssertion( "subcutaneous") AnnotationAssertion( "subcutaneus") AnnotationAssertion(rdfs:label "hypodermis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -409929,7 +410295,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Development notes:Formation largely takes place during fetal and perinatal skin development. However, after skin wounding de novo hair follicle formation may also occur in adult mouse and rabbit skin[DOI:10.1016/j.cub.2008.12.005].") AnnotationAssertion(rdfs:label "hair follicle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4d/Hair_follicle-en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4d/Hair_follicle-en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -409976,7 +410342,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "right cardiac atrium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -409989,7 +410357,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left cardiac atrium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -410003,7 +410373,9 @@ AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion( "In mammals continuous with the pulmonary arteries") AnnotationAssertion(rdfs:label "heart right ventricle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -410033,7 +410405,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "add class for fetal shunt?") AnnotationAssertion(rdfs:label "ductus venosus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410046,7 +410418,9 @@ AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion( "In mammals continuous with aorta") AnnotationAssertion(rdfs:label "heart left ventricle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -410059,7 +410433,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (interatrial septum) AnnotationAssertion(rdfs:label "interatrial septum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410080,7 +410454,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In the embryo, the atrioventricular canal delays the impulse from atrium to ventricle[PMID:22984480]") AnnotationAssertion( "The right side of the AVC becomes the tricuspid valve whereas the left side of the AVC will become the bicuspid valve") AnnotationAssertion(rdfs:label "atrioventricular canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410113,7 +410487,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "appendicular skeleton") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Appendages-and-the-appendicular-skeleton"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Appendicular_skeleton_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Appendicular_skeleton_diagram.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410140,7 +410514,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "interventricular septum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410150,7 +410526,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "mesenteric") AnnotationAssertion(rdfs:label "mesentery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray1038.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray1038.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410159,7 +410535,12 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider 'integumentary system' for invertebrates") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "skin of body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Skin.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_M_Skin.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Skin.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Skin.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-skin.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -410170,7 +410551,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (apex of heart) AnnotationAssertion(rdfs:label "apex of heart") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410222,7 +410603,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "crural") AnnotationAssertion(rdfs:label "hindlimb") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -410241,7 +410622,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vestibulo-auditory system) AnnotationAssertion(rdfs:label "vestibulo-auditory system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410253,7 +410634,10 @@ AnnotationAssertion( "In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron") AnnotationAssertion( "It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells") AnnotationAssertion(rdfs:label "spleen") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Spleen.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -410274,7 +410658,9 @@ AnnotationAssertion( "The liver is found in all vertebrates, and is typically the largest visceral organ. Its form varies considerably in different species, and is largely determined by the shape and arrangement of the surrounding organs. Nonetheless, in most species it is divided into right and left lobes; exceptions to this general rule include snakes, where the shape of the body necessitates a simple cigar-like form. The internal structure of the liver is broadly similar in all vertebrates.") AnnotationAssertion( "secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO].") AnnotationAssertion(rdfs:label "liver") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -410300,7 +410686,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "small intestine") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410322,8 +410710,8 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion(rdfs:comment "Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988)") AnnotationAssertion(rdfs:label "gallbladder") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b1/GallbladderAnatomy-en.svg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/f4/Abdomal_organs.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b1/GallbladderAnatomy-en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/f4/Abdomal_organs.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -410383,7 +410771,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "duodenal") AnnotationAssertion(rdfs:label "duodenum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410399,7 +410789,9 @@ AnnotationAssertion( "jejunal") AnnotationAssertion( "The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum.[Wikipedia:Jejunum]") AnnotationAssertion(rdfs:label "jejunum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410412,7 +410804,9 @@ AnnotationAssertion( "ileal") AnnotationAssertion( "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum.[Wikipedia:Ileum]") AnnotationAssertion(rdfs:label "ileum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410501,7 +410895,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (inferior olivary complex) AnnotationAssertion(rdfs:label "inferior olivary complex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/72/CerebCircuit.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/72/CerebCircuit.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410511,7 +410905,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO:0021718]") AnnotationAssertion( "The SOC displays a significant interspecies variation, being largest in bats and rodents and smaller in primates.") AnnotationAssertion(rdfs:label "superior olivary complex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410522,7 +410916,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia)") AnnotationAssertion(rdfs:label "cerebellar cortex") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410531,7 +410925,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cerebellar nuclear complex) AnnotationAssertion(rdfs:label "cerebellar nuclear complex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410543,7 +410937,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( ) AnnotationAssertion( "responsible for mediating unconscious proprioception.[Wikipedia:Anterior_lobe_of_cerebellum]") AnnotationAssertion(rdfs:label "anterior lobe of cerebellum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/13/CerebellumRegions.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/13/CerebellumRegions.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410551,7 +410945,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (dentate nucleus) AnnotationAssertion(rdfs:label "dentate nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410571,7 +410965,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tricuspid valve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -410583,7 +410979,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mitral valve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410597,7 +410995,9 @@ DisjointClasses( ) AnnotationAssertion(rdfs:comment "Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets)") AnnotationAssertion(rdfs:label "aortic valve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410605,7 +411005,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Hypendymal cells being part of the subcommissural organ is not axiomatized as it is rare in non-mammals. Consider using GCIs if this axiom needs to be added.") AnnotationAssertion(rdfs:label "subcommissural organ") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410617,7 +411017,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pulmonary valve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410627,7 +411029,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check ZFA/pons. also GO says part of dorsorostral pons") AnnotationAssertion(rdfs:label "locus ceruleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -410637,7 +411039,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (superior salivatory nucleus) AnnotationAssertion(rdfs:label "superior salivatory nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -410651,14 +411053,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "we follow NIF in dividing this into 3 parts. This allows for consistency with ABA") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior cerebellar peduncle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png"^^xsd:anyURI) SubClassOf( ) # Class: (middle cerebellar peduncle) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "middle cerebellar peduncle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410667,14 +411069,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (fastigial nucleus) AnnotationAssertion(rdfs:label "fastigial nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (area postrema) AnnotationAssertion(rdfs:label "area postrema") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410683,7 +411085,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior cerebellar peduncle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410692,7 +411094,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "fixed in GO to reflect FMA. See email to David/Varsha June 18 2010") AnnotationAssertion(rdfs:label "endocardium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410712,7 +411114,11 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "right lung") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410721,7 +411127,11 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left lung") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dd/Gray973.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dd/Gray973.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410741,6 +411151,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (upper lobe of right lung) AnnotationAssertion(rdfs:label "upper lobe of right lung") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -410750,6 +411164,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lower lobe of right lung) AnnotationAssertion(rdfs:label "lower lobe of right lung") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -410761,7 +411179,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In human anatomy, respiratory bronchioles exists proximal to the alveolar ducts. The epithelial lining consists of smooth muscle knobs covered by nonciliated, simple cuboidal cells. The smooth muscle constricts under parasympathetic innervation and relax under sympathetic innervation") AnnotationAssertion(rdfs:label "pulmonary alveolar duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8f/Gray975.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8f/Gray975.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410770,7 +411188,11 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Called 'middle lobe of lung' in FMA") AnnotationAssertion(rdfs:label "middle lobe of right lung") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -410780,8 +411202,11 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (right main bronchus) AnnotationAssertion(rdfs:label "right main bronchus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410789,8 +411214,11 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (left main bronchus) AnnotationAssertion(rdfs:label "left main bronchus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410798,13 +411226,13 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lateral funiculus of spinal cord) AnnotationAssertion(rdfs:label "lateral funiculus of spinal cord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) SubClassOf( ) # Class: (ventral funiculus of spinal cord) AnnotationAssertion(rdfs:label "ventral funiculus of spinal cord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410814,6 +411242,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In humans, histologically identical to trachea.") AnnotationAssertion(rdfs:label "main bronchus") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410825,7 +411255,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "They have relatively large lumens that are lined by respiratory epithelium. There is a smooth muscle layer below the epithelium arranged as two ribbons of muscle that spiral in opposite directions. This smooth muscle layer contains seromucous glands. Irregularly arranged plates of hyaline cartilage surround the smooth muscle. These plates give structural support to the bronchus and maintain the patency of the lumen.") AnnotationAssertion(rdfs:label "lobar bronchus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410838,7 +411268,11 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "segmental bronchus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410854,7 +411288,11 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "bronchial") AnnotationAssertion( "In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue") AnnotationAssertion(rdfs:label "bronchus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410865,7 +411303,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( "bronchiolar") AnnotationAssertion(rdfs:label "bronchiole") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410875,7 +411313,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "terminal bronchiole") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410886,7 +411324,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "respiratory bronchiole") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410909,7 +411347,7 @@ AnnotationAssertion( "The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction.[Wikipedia:Subiculum]") AnnotationAssertion( "in DHBA subicular cortex is divided into subiculum, prosubiculum and supracallosal subiculum") AnnotationAssertion(rdfs:label "subiculum") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -410925,7 +411363,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]") AnnotationAssertion(rdfs:label "capsule of lymph node") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/92/Lymphknoten_(Schwein).jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/92/Lymphknoten_(Schwein).jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410936,7 +411376,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "trabecula of lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray598.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray598.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410945,7 +411385,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke's pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head[NCBIBook:NBK53175].") AnnotationAssertion(rdfs:label "adenohypophysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -410962,7 +411402,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (median eminence of neurohypophysis) AnnotationAssertion(rdfs:label "median eminence of neurohypophysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -410971,7 +411411,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (neurohypophysis) AnnotationAssertion(rdfs:label "neurohypophysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411021,6 +411461,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vasculature of eye") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -411051,7 +411493,7 @@ DisjointClasses( ) AnnotationAssertion(rdfs:comment "May be cartilage in some species.") AnnotationAssertion(rdfs:label "manubrium of sternum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411062,7 +411504,7 @@ DisjointClasses( (mammillary body) AnnotationAssertion(rdfs:label "mammillary body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411074,7 +411516,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum.") AnnotationAssertion(rdfs:label "xiphoid process") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray117.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray117.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411083,7 +411525,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Note that some definitions state that this a segment of the primordial sternum.") AnnotationAssertion(rdfs:label "sternebra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411107,7 +411549,7 @@ AnnotationAssertion( "nerve root") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf(Annotation(rdfs:comment "EDITOR_NOTE we do not commit to CNS or PNS to allow for flexibility with this class") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411129,7 +411571,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (macula of utricle of membranous labyrinth) AnnotationAssertion(rdfs:label "macula of utricle of membranous labyrinth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411140,7 +411582,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "WP considers epiphyseal plates as subtypes of this") AnnotationAssertion( "consider adding link to hyaline cartilage") AnnotationAssertion(rdfs:label "synchondrosis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray297.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray297.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -411151,7 +411593,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider adding fibrocartilage class") AnnotationAssertion(rdfs:label "symphysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray298.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray298.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) @@ -411178,7 +411620,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "fontanelle") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/1795") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411204,8 +411646,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In many species, the diaphragm separates thoracic and abdominal cavities") AnnotationAssertion(rdfs:label "thoracic cavity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray846.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray846.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411215,8 +411657,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (basilar membrane of cochlea) AnnotationAssertion(rdfs:label "basilar membrane of cochlea") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9b/Organ_of_corti.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9b/Organ_of_corti.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411230,8 +411672,8 @@ AnnotationAssertion( ) AnnotationAssertion( "in basal early lizards, organized into 3 tonotopically organized areas, the outer areas lack a tectorial membrane[ISBN:9780387714691]") AnnotationAssertion(rdfs:label "spiral organ of cochlea") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411269,7 +411711,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (head of rib) AnnotationAssertion(rdfs:label "head of rib") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411277,7 +411719,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (olfactory gland) AnnotationAssertion(rdfs:label "olfactory gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411306,14 +411748,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "we currently model this as part of the rib, is this correct?") AnnotationAssertion(rdfs:label "costal cartilage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (true rib) AnnotationAssertion(rdfs:label "true rib") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411323,14 +411765,14 @@ DisjointClasses( (false rib) AnnotationAssertion(rdfs:label "false rib") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png"^^xsd:anyURI) SubClassOf( ) # Class: (floating rib) AnnotationAssertion( "We synonymize 'free rib' with 'floating rib' - this case it referes to caudal ribs, but you can have free ribs (i.e. non-attached ventrally) in other places . Should we just synonymize this with 'floating rib'? see Primate Anatomy: An Introduction by Friderun Ankel-Simons pg. 275") AnnotationAssertion(rdfs:label "floating rib") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Skeleton_woman_back.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Skeleton_woman_back.png"^^xsd:anyURI) SubClassOf( ) # Class: (spinal cord) @@ -411338,7 +411780,9 @@ SubClassOf( "TODO - add superclass to unify with VNC?") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "spinal cord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -411365,7 +411809,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[Wikipedia:Nucleus_pulposus]") AnnotationAssertion(rdfs:comment "Function noyes: It functions to distribute hydraulic pressure in all directions within each disc under compressive loads.") AnnotationAssertion(rdfs:label "nucleus pulposus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d9/Cervical_vertebra_english.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d9/Cervical_vertebra_english.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -411383,7 +411827,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "requires checking embryonic vs adult; isa fetal organ part in FMA; adult bone of upper jaw in AAO and ZFA; split. Note that we have loops if we add develops_from UBERON:0005620 primary palate") AnnotationAssertion(rdfs:label "premaxilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -411398,7 +411842,7 @@ DisjointClasses( ObjectSomeValues # Class: (cerebellar hemisphere) AnnotationAssertion(rdfs:label "cerebellar hemisphere") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411408,7 +411852,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (uterine horn) AnnotationAssertion(rdfs:label "uterine horn") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/27/Illu_female_pelvis.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/27/Illu_female_pelvis.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -411421,7 +411865,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (thyroglossal duct) AnnotationAssertion(rdfs:label "thyroglossal duct") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fd/Illu08_thyroid.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fd/Illu08_thyroid.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -411431,7 +411875,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Generally formed only in tetrapods; lungfish have rudimentary VN organs; true VN organs are not normally found in recent fishes, birds, aquatic reptiles, aquatic mammals (Bertmar 1980). Humans: Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans was controversial, though most studies agree the organ regresses during fetal development. Many genes essential for VNO function in animals (such as TRPC2) are non-functional in humans (Liman ER. Use it or lose it: molecular evolution of sensory signaling in primates. Pflugers Arch. 2006;453(2):125-31.)") AnnotationAssertion(rdfs:label "vomeronasal organ") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411444,7 +411888,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (dorsal horn of spinal cord) AnnotationAssertion(rdfs:label "dorsal horn of spinal cord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411467,7 +411911,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "ZFA class is undefined. We currently do not place this as part of the DCML pathway as this would lead to taxon constraint violations.") AnnotationAssertion(rdfs:label "dorsal funiculus of spinal cord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411476,7 +411920,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates") AnnotationAssertion(rdfs:label "corpora quadrigemina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411486,14 +411930,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ventral root of spinal cord) AnnotationAssertion(rdfs:label "ventral root of spinal cord") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (dorsal root of spinal cord) AnnotationAssertion(rdfs:label "dorsal root of spinal cord") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411503,7 +411947,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - add parts") AnnotationAssertion(rdfs:label "lentiform nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray741.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray741.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411517,8 +411961,10 @@ AnnotationAssertion( "Note that in uberon 'main olfactory bulb' is a separate class, but some ontologies may treat this as partially synonymous. The distinction may only make sense in tetrapods with a vomeronasal organ (olfactory nerves terminate in OB in fishes and in main OB in tetrapods - Butler and Hodos)") AnnotationAssertion( "the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP).") AnnotationAssertion(rdfs:label "olfactory bulb") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411532,7 +411978,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "in animals with a long snout, the olfactory tract is long, whereas it is short in short-snouted animals such as primates. In some birds the tract per se does not exist as the bulb is connected directly to the cerebral hemisphere.[ISBN:0471888893]") AnnotationAssertion(rdfs:label "olfactory tract") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411554,7 +412000,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In humans, Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla") AnnotationAssertion(rdfs:label "hyaloid artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -411587,7 +412033,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation.") AnnotationAssertion( "It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain.") AnnotationAssertion(rdfs:label "reticular formation") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411595,7 +412041,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lamina of spiral limbus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray930.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray930.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411611,7 +412057,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vestibular aqueduct) AnnotationAssertion(rdfs:label "vestibular aqueduct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -411625,7 +412071,7 @@ AnnotationAssertion( "otolithic") AnnotationAssertion( "Mammals have many tiny otoconia and fish have three large otoliths[ZFIN:df]") AnnotationAssertion(rdfs:label "otolith") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411636,7 +412082,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vestibular membrane of cochlear duct) AnnotationAssertion(rdfs:label "vestibular membrane of cochlear duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411646,7 +412092,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (stria vascularis of cochlear duct) AnnotationAssertion(rdfs:label "stria vascularis of cochlear duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -411658,7 +412104,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "modeled as space in EHDAA2") AnnotationAssertion(rdfs:label "telencephalic ventricle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411669,7 +412115,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider adding class for secondary vesicle precursor") AnnotationAssertion(rdfs:label "third ventricle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411686,7 +412132,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "midbrain cerebral aqueduct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411705,7 +412151,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "previously mapped to FMA:75364. Note some ontologies (NIF, SNOMED) subdivide this into lumbar, thoracic, etc. Note we follow FMA in distinguishing between the canal and the lumen") AnnotationAssertion(rdfs:label "central canal of spinal cord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411718,7 +412164,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (costovertebral joint) AnnotationAssertion(rdfs:label "costovertebral joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray312.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray312.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -411739,7 +412185,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "biliary system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -411760,7 +412206,7 @@ DisjointClasses( "TODO - check cochlear duct vs cochlear aqueduct vs scala media") AnnotationAssertion(rdfs:comment "located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [Wikipedia:Scala_media]") AnnotationAssertion(rdfs:label "scala media") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411769,7 +412215,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (dorsal mesentery) AnnotationAssertion(rdfs:label "dorsal mesentery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/85/Gray985.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/85/Gray985.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411779,7 +412225,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).") AnnotationAssertion(rdfs:label "brainstem") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -411792,7 +412238,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "alveolus of lung") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/46/Alveolus_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/46/Alveolus_diagram.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -411842,7 +412288,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (layer of hippocampus) -AnnotationAssertion( "TODO - check NIF xref") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE TODO - check NIF xref") AnnotationAssertion(rdfs:label "layer of hippocampus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -411868,7 +412314,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (hippocampus fimbria) AnnotationAssertion(rdfs:label "hippocampus fimbria") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray749.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray749.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411876,7 +412322,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (hippocampus pyramidal layer) -AnnotationAssertion( "this layer changes in its depthwise spatial relation across its extent") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE this layer changes in its depthwise spatial relation across its extent") AnnotationAssertion(rdfs:label "hippocampus pyramidal layer") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -411887,7 +412333,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (midbrain tectum) AnnotationAssertion(rdfs:label "midbrain tectum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411903,8 +412349,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (white matter) AnnotationAssertion(rdfs:label "white matter") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Grey_matter_and_white_matter_-_very_high_mag.jpg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Grey_matter_and_white_matter_-_very_high_mag.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -411949,7 +412395,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (extraglomerular mesangium) -AnnotationAssertion( "check MA part_ofs - should be spatially disjoint from renal glomerulus?") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE check MA part_ofs - should be spatially disjoint from renal glomerulus?") AnnotationAssertion(rdfs:label "extraglomerular mesangium") SubClassOf( ) SubClassOf( ) @@ -411960,8 +412406,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (coelemic cavity lumen) -AnnotationAssertion( "check the FMA placement here; ncit placement of body cavity here probably not correct") AnnotationAssertion( "In mammals it forms the peritoneal, pleural, and pericardial cavities") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE check the FMA placement here; ncit placement of body cavity here probably not correct") AnnotationAssertion(rdfs:label "coelemic cavity lumen") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412012,7 +412458,7 @@ AnnotationAssertion( "In between vertebra the notochord becomes the nucleus pulposus, under it degenerates, and at anterior end in some species its tissue merges with some of the cranial bones.. Some organisms retain a post-embryonic notochord.") AnnotationAssertion(rdfs:comment "The notochord appears early in embryogeny and plays an important role in promoting or organizing the embryonic development of nearby structures. In most adult chordates the notochord disappears or becomes highly modified. In some non-vertebrate chordates and fishes the notochord persists as a laterally flexible but incompressible skeletal rod that prevents telescopic collapse of the body during swimming[TOLWEB]") AnnotationAssertion(rdfs:label "notochord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412029,11 +412475,11 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (somite) -AnnotationAssertion( "currently classified as an epithelial vesicle, consistent with EHDAA2 and https://github.com/obophenotype/uberon/wiki/The-neural-crest. Consider making 'somitic mesoderm' a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk") +AnnotationAssertion( "EDITOR_NOTE currently classified as an epithelial vesicle, consistent with EHDAA2 and https://github.com/obophenotype/uberon/wiki/The-neural-crest. Consider making 'somitic mesoderm' a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk") AnnotationAssertion( "somitic") AnnotationAssertion(rdfs:comment "When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248]") AnnotationAssertion(rdfs:label "somite") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412062,7 +412508,8 @@ AnnotationAssertion( "umbilical") AnnotationAssertion(rdfs:comment "See notes for connecting stalk") AnnotationAssertion(rdfs:label "umbilical cord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f3/Umbilicalcord.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f3/Umbilicalcord.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -412072,7 +412519,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pulmonary trunk") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -412082,7 +412531,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (submandibular duct) AnnotationAssertion(rdfs:label "submandibular duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412100,7 +412549,9 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (corpus callosum) AnnotationAssertion(rdfs:label "corpus callosum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412165,11 +412616,11 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (neural crest) -AnnotationAssertion( "consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams).") +AnnotationAssertion( "EDITOR_NOTE consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams).") AnnotationAssertion(rdfs:comment "Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells.") AnnotationAssertion(rdfs:label "neural crest") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray644.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray644.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412214,7 +412665,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "Thoracic vertebrae in all species are defined as those vertebrae which also carry a pair of ribs, and lie caudal to the cervical vertebrae. In humans, they are distinguished by the presence of facets on the sides of the bodies for articulation with the heads of the ribs, and facets on the transverse processes of all, except the eleventh and twelfth, for articulation with the tubercles of the ribs") AnnotationAssertion(rdfs:label "thoracic vertebra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray90.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray90.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412226,9 +412677,9 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (epicardium) -AnnotationAssertion( "TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer.") AnnotationAssertion( ) AnnotationAssertion( "The visceral pericardium apparently produces the pericardial fluid, which lubricates motion between the inner and outer layers of the pericardium. During ventricular contraction, the wave of depolarization moves from endocardial to epicardial surface. [Wikipedia:Epicardium]") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer.") AnnotationAssertion(rdfs:label "epicardium") SubClassOf( ) SubClassOf( ) @@ -412239,10 +412690,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (myocardium) -AnnotationAssertion( "TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium") AnnotationAssertion( "myocardial") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium") AnnotationAssertion(rdfs:label "myocardium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Glanzstreifen.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Glanzstreifen.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412270,8 +412721,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "WP:Heart states: \"The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.\". Note however that ZFA has SA node.") AnnotationAssertion(rdfs:label "sinoatrial node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Sinoatrial_node_low_mag.jpg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Sinoatrial_node_low_mag.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412285,8 +412736,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "atrioventricular node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray501.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray501.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412301,8 +412752,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bundle of His") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b6/ECG_Principle_fast.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b6/ECG_Principle_fast.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412313,7 +412764,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cardiac Purkinje fiber) AnnotationAssertion(rdfs:label "cardiac Purkinje fiber") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412334,7 +412785,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "perianal") AnnotationAssertion(rdfs:label "perineum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray406.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray406.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -412354,7 +412805,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - in ZFA is_a epithelium") AnnotationAssertion( "peritoneal") AnnotationAssertion(rdfs:label "peritoneum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412377,7 +412828,7 @@ AnnotationAssertion( "Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx).") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "meninx") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/48/Illu_meninges.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/48/Illu_meninges.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412389,8 +412840,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider adding adjacency relationship to neuraxis (brain+spinal cord); however note that at this time the meninges may be considered part of the nervous system") AnnotationAssertion(rdfs:label "pia mater") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray770-en.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray770.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray770-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray770.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -412398,7 +412849,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (arachnoid mater) AnnotationAssertion(rdfs:label "arachnoid mater") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray767.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray767.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -412408,7 +412859,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "capable of inducing chondrogenesis - requires contact with an epithelium - http://www.ncbi.nlm.nih.gov/pubmed/16496288") AnnotationAssertion( "some ontologies consider dura mater part of the CNS, others dispute this and claim it surrounds it (e.g. DOI:10.1111/joa.12381)[https://github.com/obophenotype/uberon/issues/1261]") AnnotationAssertion(rdfs:label "dura mater") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8e/Meninges-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8e/Meninges-en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) @@ -412448,7 +412899,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The bulbourethral glands are compound tubulo-alveolar glands.") AnnotationAssertion(rdfs:label "bulbo-urethral gland") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412465,7 +412916,8 @@ AnnotationAssertion( ) AnnotationAssertion( "prostatic") AnnotationAssertion(rdfs:label "prostate gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Prostatelead.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Prostatelead.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412474,7 +412926,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (endocrine gland) AnnotationAssertion(rdfs:label "endocrine gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Illu_endocrine_system.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Illu_endocrine_system.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412485,8 +412937,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The origin of the adrenal gland is still controversial. It is thought to share the same origin as the kidney and gonads, derived from coelomic epithelium of the urogenital ridge and/or the underlying mesenchyme (Keegan and Hammer, 2002; Morohashi, 1997). We follow Kardong and state homology at the level of the cortex and medulla rather than gland as a whole") AnnotationAssertion( "suprarenal cortex manufactures corticosteroids; suprarenal medulla manufactures epinephrine and norepinephrine; suprarenal medulla receives preganglionic sympathetic innervation from the greater thoracic splanchnic n.") AnnotationAssertion(rdfs:label "adrenal gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Illu_endocrine_system_New.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Illu_endocrine_system.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Illu_endocrine_system_New.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Illu_endocrine_system.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412502,7 +412954,10 @@ AnnotationAssertion( ) AnnotationAssertion( "thymic") AnnotationAssertion(rdfs:label "thymus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Thymus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412526,7 +412981,7 @@ AnnotationAssertion( ) AnnotationAssertion( "In adults, marrow in large bones produces new blood cells[Wikipedia:Bone_marrow]") AnnotationAssertion(rdfs:label "bone marrow") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/74/Gray72-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/74/Gray72-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412550,7 +413005,7 @@ DisjointClasses( (palatine tonsil) AnnotationAssertion(rdfs:label "palatine tonsil") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412559,7 +413014,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (metacarpal bone) AnnotationAssertion(rdfs:label "metacarpal bone") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412573,7 +413028,11 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cricoid cartilage) AnnotationAssertion(rdfs:label "cricoid cartilage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412625,7 +413084,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "trapezius muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/60/Trapezius.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/60/Trapezius.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412641,7 +413100,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pectoralis major") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412656,7 +413115,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "While the 'sixpack' is by far the most common configuration of the muscle bellies of the rectus, there exist rare anatomic variations which result in the appearance of eight ('eightpack'), ten, or-even rarer-asymmetrically arranged segments. All these variations are functionally equivalent") AnnotationAssertion(rdfs:label "rectus abdominis muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/95/Rectus_abdominis.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/95/Rectus_abdominis.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412692,8 +413151,8 @@ DisjointClasses( "Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here") AnnotationAssertion(rdfs:label "forelimb zeugopod") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Veins.jpg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/50/Forearm_labeled.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Veins.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/50/Forearm_labeled.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412705,7 +413164,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "pedal") AnnotationAssertion(rdfs:label "pes") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ae/Male_Right_Foot_1.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ae/Male_Right_Foot_1.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412741,7 +413200,7 @@ DisjointClasses( (lymph) AnnotationAssertion(rdfs:label "lymph") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Illu_lymph_capillary.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Illu_lymph_capillary.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -412751,7 +413210,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, and is surrounded by connective tissue") AnnotationAssertion(rdfs:label "nasolacrimal duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412766,9 +413225,9 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pharyngotympanic tube) -AnnotationAssertion( "we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship") AnnotationAssertion(rdfs:label "pharyngotympanic tube") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/40/Ear-anatomy-text-small-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/40/Ear-anatomy-text-small-en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412778,7 +413237,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (bile duct) AnnotationAssertion(rdfs:label "bile duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412792,7 +413251,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "talus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412803,7 +413262,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vomer") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412818,7 +413277,7 @@ AnnotationAssertion( "maxillary") AnnotationAssertion(rdfs:comment "Fusion of maxilla + premaxilla") AnnotationAssertion(rdfs:label "maxilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412837,7 +413296,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "like all limb segments, this class encompasses both the unformed hand region of the embryo to the fully formed structure complete with skeleton") AnnotationAssertion( "manual") AnnotationAssertion(rdfs:label "manus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/LeftHand0.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/LeftHand0.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412875,7 +413334,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The contraction of the diaphragm creates a negative pressure within the pleural cavity which forces the lungs to expand resulting in passive exhalation and active inhalation. This breathing process can be made forceful through the contraction of the external intercostal muscles which forces the rib cage to expand and add to the negative pressure in the pleural cavity causing the lungs to fill with air. The fluid in the cavity provides lubrication and cushioning") AnnotationAssertion(rdfs:label "pleural cavity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412900,7 +413359,7 @@ DisjointClasses( (pericardial sac) AnnotationAssertion(rdfs:label "pericardial sac") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412914,7 +413373,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "pericardial") AnnotationAssertion(rdfs:label "pericardium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412926,7 +413385,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (parietal serous pericardium) AnnotationAssertion(rdfs:label "parietal serous pericardium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -412943,7 +413402,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (autonomic nervous system) AnnotationAssertion(rdfs:label "autonomic nervous system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -412953,7 +413412,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "clitoral") AnnotationAssertion(rdfs:label "clitoris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Clitoris_anatomy_labeled-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Clitoris_anatomy_labeled-en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -412982,7 +413441,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( ) AnnotationAssertion( "In some species, some parts of the skull may be composed of vertebra-like elements, e.g. the occipital bone in humans is composed of four vertebra-like segments. In many vertebrate species, cervical vertebrae are variable in number; however, almost all mammals have seven (including those with very short necks relative to body size, such as elephants or whales, and those with very long necks, such as giraffes). The few exceptions include the manatee and the sloths, of which the two-toed sloth has six cervical vertebrae and the three-toed sloth has up to nine cervical vertebrae. In many species, though not in mammals, the cervical vertebrae bear ribs. In many other groups, such as lizards and saurischian dinosaurs, the cervical ribs are large; in birds they are small and completely fused to the vertebrae. The transverse processes of mammals are homologous to the cervical ribs of other amniotes. Thoracic vertebrae in all species are defined as those vertebrae which also carry a pair of ribs, and lie caudal to the cervical vertebrae. In humans, cervical vertebrae are the smallest of the true vertebrae, and can be readily distinguished from those of the thoracic or lumbar regions by the presence of a foramen (hole) in each transverse process, through which passes the vertebral artery.") AnnotationAssertion(rdfs:label "cervical vertebra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Illu_vertebral_column.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Illu_vertebral_column.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -412996,7 +413455,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lumbar vertebra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c8/Gray93.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c8/Gray93.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -413039,7 +413498,7 @@ SubClassOf( "Previous: \"A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten].\" See also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W]") AnnotationAssertion(rdfs:label "cartilage tissue") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413061,7 +413520,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the set of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done.") AnnotationAssertion(rdfs:label "basal ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Basal_Ganglia_and_Related_Structures.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Basal_Ganglia_and_Related_Structures.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413078,7 +413537,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fourth ventricle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413151,7 +413612,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cervical lymph node) AnnotationAssertion(rdfs:label "cervical lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Lymph_node_regions.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Lymph_node_regions.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413159,7 +413620,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pars intermedia of adenohypophysis) AnnotationAssertion(rdfs:label "pars intermedia of adenohypophysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413172,7 +413633,7 @@ DisjointClasses( ObjectSomeValues # Class: (pituitary stalk) AnnotationAssertion(rdfs:label "pituitary stalk") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413184,7 +413645,7 @@ DisjointClasses( "striatal") AnnotationAssertion(rdfs:label "striatum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413222,7 +413683,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cervicothoracic ganglion) AnnotationAssertion(rdfs:label "cervicothoracic ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray845.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray845.png"^^xsd:anyURI) SubClassOf( ) # Class: (axillary nerve trunk) @@ -413257,7 +413718,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "this bone is termed the triquetral bone in some mammalian taxa, notably humans") AnnotationAssertion(rdfs:label "ulnare") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413269,7 +413730,7 @@ AnnotationAssertion( "patellar") AnnotationAssertion(rdfs:comment "The patella, also known as the knee cap or kneepan, is the largest sesamoid bone in the human body. The primary functional role of the patella is knee extension. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. See also: fabella.") AnnotationAssertion(rdfs:label "patella") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -413291,7 +413752,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In the mouse, Fungiform and palatal taste buds are innervated by the geniculate ganglion cells of the facial nerve[DOI:10.1523/JNEUROSCI.5142-05.2006]") AnnotationAssertion(rdfs:label "fungiform papilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413302,7 +413763,7 @@ AnnotationAssertion( ) AnnotationAssertion( "formed under the influence of progesterone and forms highly-characteristic cells. [Wikipedia:Decidua]") AnnotationAssertion(rdfs:label "decidua") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray33.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray33.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413314,7 +413775,7 @@ AnnotationAssertion( "simple or branched tubular") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endometrial gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray1169.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray1169.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -413327,14 +413788,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ethmoid sinus) AnnotationAssertion(rdfs:label "ethmoid sinus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg"^^xsd:anyURI) SubClassOf( ) # Class: (internal thoracic artery) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "internal thoracic artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray522.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray522.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413368,7 +413829,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vesical vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413387,7 +413848,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (erector spinae muscle group) AnnotationAssertion(rdfs:label "erector spinae muscle group") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -413401,8 +413862,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "check FMA, singular.") AnnotationAssertion(rdfs:label "muscle of posterior compartment of hindlimb stylopod") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413425,7 +413886,7 @@ AnnotationAssertion( "The lymphatic system of anuran amphibians is characterized by large lymphatic sacs and two pairs of lymph hearts that return lymph into the venous circulation but no lymph vessels per se [10.1152/japplphysiol.00201.2013]") AnnotationAssertion( "The lymphatic systems of reptiles and some birds have lymph hearts, and both groups have extensive lymph vessels, but their functional role in both lymph movement and plasma volume homeostasis is almost completely unknown [10.1152/japplphysiol.00201.2013]") AnnotationAssertion(rdfs:label "lymphoid system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/TE-Lymphatic_system_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/TE-Lymphatic_system_diagram.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413441,13 +413902,13 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (filiform papilla) AnnotationAssertion(rdfs:label "filiform papilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1016.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1016.png"^^xsd:anyURI) SubClassOf( ) # Class: (foliate papilla) AnnotationAssertion(rdfs:label "foliate papilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413514,7 +413975,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (orbitosphenoid) AnnotationAssertion(rdfs:label "orbitosphenoid") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -413557,7 +414018,9 @@ SubClassOf( "one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula.") AnnotationAssertion(rdfs:label "trabecular bone tissue") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/34/Illu_compact_spongy_bone.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/34/Illu_compact_spongy_bone.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413575,6 +414038,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (prostate duct) AnnotationAssertion(rdfs:label "prostate duct") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -413585,7 +414049,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (glottis) AnnotationAssertion(rdfs:label "glottis") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Arytenoid_cartilage.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Arytenoid_cartilage.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413607,7 +414071,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (coronal suture) AnnotationAssertion(rdfs:label "coronal suture") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/ae/Gray188-Coronal_suture.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/ae/Gray188-Coronal_suture.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413618,8 +414082,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "in humans, the frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted]") AnnotationAssertion(rdfs:label "frontal suture") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/17/Gray134.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d1/Frontal_suture.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/17/Gray134.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d1/Frontal_suture.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(2 ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413627,7 +414091,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lambdoid suture) AnnotationAssertion(rdfs:label "lambdoid suture") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/3d/Gray188-Lambdoid_suture.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/3d/Gray188-Lambdoid_suture.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413639,7 +414103,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sagittal suture) AnnotationAssertion(rdfs:label "sagittal suture") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/24/Kort-lang-skalle.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/24/Kort-lang-skalle.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(2 ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413649,7 +414113,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "uterine artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -413668,7 +414132,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities.[Wikipedia:Papillary_muscle]") AnnotationAssertion(rdfs:label "papillary muscle of heart") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/87/Papillary_muscles.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/87/Papillary_muscles.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413693,7 +414159,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (acromion) AnnotationAssertion(rdfs:label "acromion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/79/Gray206.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/79/Gray206.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413701,7 +414167,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In basal Tetrapodomorph lineages often the deltoid process and the pectoral processes are separate and thus should not be made exact synonyms to the deltopectoral crest.[PHENOSCAPE:ad]") AnnotationAssertion(rdfs:label "deltopectoral crest") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/HumerusFront.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/HumerusFront.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -413712,7 +414178,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "we follow the FMA in placing this in the membranous labyrinth. Notes: The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear") AnnotationAssertion(rdfs:label "cochlear labyrinth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413724,7 +414190,7 @@ AnnotationAssertion( "The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter") AnnotationAssertion( "The zygomatic arch is occasionally referred to as the zygoma, but this term usually refers to the zygomatic bone or occasionally the zygomatic process.") AnnotationAssertion(rdfs:label "zygomatic arch") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/f4/Gray188-Sphenozygomatic_suture.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/f4/Gray188-Sphenozygomatic_suture.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -413733,7 +414199,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (oval window) AnnotationAssertion(rdfs:label "oval window") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413741,7 +414207,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (round window of inner ear) AnnotationAssertion(rdfs:label "round window of inner ear") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413749,14 +414215,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (greater trochanter) AnnotationAssertion(rdfs:label "greater trochanter") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lesser trochanter) AnnotationAssertion(rdfs:label "lesser trochanter") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413795,13 +414261,15 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "celiac lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/71/Gray613.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/71/Gray613.png"^^xsd:anyURI) SubClassOf( ) # Class: (mesenteric lymph node) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesenteric lymph node") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -413810,7 +414278,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anterior fontanel) AnnotationAssertion(rdfs:label "anterior fontanel") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413830,7 +414298,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "corpus luteum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Folliclesinovary.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/57/Folliclesinovary.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -413847,7 +414315,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "placement in this class to be inferred") AnnotationAssertion(rdfs:label "endochondral bone") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -413866,7 +414334,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "periosteal") AnnotationAssertion(rdfs:label "periosteum") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cf/Bone_growth.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cf/Bone_growth.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413876,7 +414344,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider splitting this class into the epiphyseal plates of long bones and vertebrae") AnnotationAssertion(rdfs:label "epiphyseal plate") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7a/Tib_fib_growth_plates.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7a/Tib_fib_growth_plates.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413885,7 +414353,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "basicranial") AnnotationAssertion(rdfs:comment "The skull base is formed from a series of cartilages either side of, and rostral to, the notochord, whose tip lies just caudal to the pituitary gland. It is closely associated with the sensory capsules, which partially or completely sur- round the olfactory epithelium, the eye, and the inner ear[PMID:11523816]") AnnotationAssertion(rdfs:label "basicranium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413895,7 +414363,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Representation of utricle, sacule and otoliths in correspondence to other ontologies may require review. In EHDAA2, saccule and utricle are epithelia") AnnotationAssertion(rdfs:label "otolith organ") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413915,13 +414383,13 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (submandibular lymph node) AnnotationAssertion(rdfs:label "submandibular lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Illu_quiz_hn_03.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Illu_quiz_hn_03.jpg"^^xsd:anyURI) SubClassOf( ) # Class: (elastic tissue) AnnotationAssertion(rdfs:label "elastic tissue") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray377.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray377.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413931,7 +414399,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "May be composed of smooth muscle and elastic tissue") AnnotationAssertion(rdfs:label "tunica media") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -413942,7 +414410,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "the FMA class represents a more generic layer which is the superclass of the layer found in both blood vessels and lymph vessels (and also endocardium) - we should probably follow this structure") AnnotationAssertion( "the FMA class represents a structure which may have both epithelium and fibroelastic connective tissue as parts") AnnotationAssertion(rdfs:label "tunica intima") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -413952,7 +414420,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (brachial lymph node) AnnotationAssertion(rdfs:label "brachial lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png"^^xsd:anyURI) SubClassOf( ) # Class: (pancreatic lymph node) @@ -413987,7 +414455,7 @@ DisjointClasses( ) AnnotationAssertion( "glandular") AnnotationAssertion(rdfs:label "gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1026.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1026.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414005,7 +414473,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "MP says - tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper. In HOG, epiblast is part of primitive streak/blastpore, which is inconsistent with the MP definition of primitive streak as a ridge of the epiblast. Note that these terms, epiblast and hypoblast, are also used to describe layers of the avian embryonic blastoderm, but the layers so-named seem to be altogether different in these two kinds of vertebrate embryos(CVS). Consider obsoleting this as a grouping class") AnnotationAssertion(rdfs:label "epiblast (generic)") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414013,10 +414481,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "See notes from https://github.com/obophenotype/uberon/wiki/The-neural-crest") AnnotationAssertion(rdfs:label "post-anal tail bud") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (paired fin) @@ -414051,7 +414518,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering") AnnotationAssertion(rdfs:label "pharyngeal arch") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -414151,7 +414618,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "temporal pole") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414160,7 +414629,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "postcentral gyrus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414176,7 +414647,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (decussation of superior cerebellar peduncle) AnnotationAssertion(rdfs:label "decussation of superior cerebellar peduncle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414185,7 +414656,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lateral corticospinal tract) AnnotationAssertion(rdfs:label "lateral corticospinal tract") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414194,13 +414665,13 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "limbic lobe") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Human_brain_inferior-medial_view_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Human_brain_inferior-medial_view_description.JPG"^^xsd:anyURI) SubClassOf( ) # Class: (emboliform nucleus) AnnotationAssertion(rdfs:label "emboliform nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) SubClassOf( ) # Class: (neuropil) @@ -414214,7 +414685,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "WP says 'The CN is located at the dorso-lateral side of the brainstem, spanning the junction of the pons and medulla.'. MA places this in pons, other sources the medulla") AnnotationAssertion(rdfs:label "cochlear nuclear complex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414222,7 +414693,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "it is recognized in human cerebellum but is not distinguishable in all mammalian species[MP]") AnnotationAssertion(rdfs:label "cerebellum globose nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png"^^xsd:anyURI) SubClassOf( ) # Class: (regional part of brain) @@ -414246,6 +414717,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "triangular part of inferior frontal gyrus") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414253,7 +414726,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (motor nucleus of trigeminal nerve) AnnotationAssertion(rdfs:label "motor nucleus of trigeminal nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -414266,7 +414739,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anterior nucleus of hypothalamus) AnnotationAssertion(rdfs:label "anterior nucleus of hypothalamus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414275,7 +414748,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior frontal gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) # Class: (septal nuclear complex) @@ -414307,7 +414782,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In TA they are grouped in both the pons and medulla; DHBA has 'vestibular nuclei of pons', with LVN and SVN underneath; WP+MA says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF.") AnnotationAssertion(rdfs:label "vestibular nuclear complex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414316,7 +414791,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (abducens nucleus) AnnotationAssertion(rdfs:label "abducens nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -414325,8 +414800,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (supramarginal gyrus) AnnotationAssertion(rdfs:label "supramarginal gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gehirn,_lateral_-_Hauptgyri_beschriftet.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gehirn,_lateral_-_Hauptgyri_beschriftet.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414335,27 +414810,31 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "middle frontal gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) # Class: (precentral gyrus) AnnotationAssertion(rdfs:label "precentral gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (metathalamus) AnnotationAssertion(rdfs:label "metathalamus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (midline nuclear group) AnnotationAssertion(rdfs:label "midline nuclear group") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414363,7 +414842,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "corticospinal tract") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414372,8 +414851,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (trochlear nucleus) AnnotationAssertion(rdfs:label "trochlear nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -414395,7 +414874,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check area vs complex. MBA:909 this is part of the hippocampal formation via retrohippocampal region") AnnotationAssertion( "In primates it is found on the medial surface of the temporal lobe, partially bounded ventrolaterally by the collateral sulcus in the human and by the rhinal sulcus in the macaque. It is subdivided on the basis of internal structure into eight parts in the human ( Insausti-2004 ),and seven parts in the macaque ( Paxinos-2009a ). In the rat and mouse it is divided into a lateral part of the entorhinal area and a medial part of the entorhinal area; the latter is further divided into dorsal and ventral zones to produce three subdivisions in the rodent ( Swanson-2004 )") AnnotationAssertion(rdfs:label "entorhinal cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray-Brodman-Entorhinal_Cortex_EC_.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray-Brodman-Entorhinal_Cortex_EC_.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414414,7 +414893,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (intralaminar nuclear group) AnnotationAssertion(rdfs:label "intralaminar nuclear group") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/ba/Thalmus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/ba/Thalmus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414437,7 +414916,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "basal forebrain") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a4/Basal_Forebrain_Monakhos_2007.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a4/Basal_Forebrain_Monakhos_2007.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414452,7 +414931,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior temporal gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414460,7 +414941,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pyramidal decussation) AnnotationAssertion(rdfs:label "pyramidal decussation") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414468,7 +414949,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ventral corticospinal tract) AnnotationAssertion(rdfs:label "ventral corticospinal tract") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414476,7 +414957,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (fusiform gyrus) AnnotationAssertion(rdfs:label "fusiform gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414484,7 +414965,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior temporal gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414499,14 +414982,16 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "middle temporal gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (ventral nuclear group) AnnotationAssertion(rdfs:label "ventral nuclear group") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414539,7 +415024,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "frontal pole") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414627,6 +415112,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left cerebral hemisphere") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414635,6 +415122,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "right cerebral hemisphere") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414707,7 +415196,7 @@ SubClassOf( (hypoglossal nucleus) AnnotationAssertion(rdfs:label "hypoglossal nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -414748,7 +415237,7 @@ SubClassOf( (hippocampal sulcus) AnnotationAssertion(rdfs:label "hippocampal sulcus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414759,7 +415248,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "occipital pole") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414767,8 +415258,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (central sulcus) AnnotationAssertion(rdfs:label "central sulcus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray726_central_sulcus.svg"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b6/Central_sulcus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray726_central_sulcus.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b6/Central_sulcus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414778,7 +415269,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (longitudinal fissure) AnnotationAssertion(rdfs:label "longitudinal fissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png"^^xsd:anyURI) SubClassOf( ) # Class: (trigeminal nucleus) @@ -414811,7 +415302,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lingual gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414837,7 +415330,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cingulate gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414846,7 +415339,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "parahippocampal gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414878,6 +415371,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "opercular part of inferior frontal gyrus") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414898,14 +415393,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior frontal gyrus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Inferior_frontal_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Inferior_frontal_gyrus.png"^^xsd:anyURI) SubClassOf( ) # Class: (facial motor nucleus) AnnotationAssertion(rdfs:comment "see comments for facial nucleus. also check ZFA/pons") AnnotationAssertion(rdfs:label "facial motor nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png"^^xsd:anyURI) SubClassOf( ) # Class: (flocculonodular lobe) @@ -414914,7 +415409,7 @@ AnnotationAssertion( ) AnnotationAssertion( "receives input from the inferior and medial vestibular nuclei and sends fibers back to the vestibular nuclei, and processes and integrates these signals to allow for the constant maintenance of balance [MP:0009961]") AnnotationAssertion(rdfs:label "flocculonodular lobe") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -414922,7 +415417,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (central lobule) AnnotationAssertion(rdfs:label "central lobule") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray703.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray703.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414931,7 +415426,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "involved in the initiation of REM sleep [Wikipedia:Pontine_tegmentum]") AnnotationAssertion(rdfs:label "pontine tegmentum") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414943,7 +415440,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cingulate cortex) AnnotationAssertion(rdfs:label "cingulate cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -414966,7 +415463,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thoracic spinal cord") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray820.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray820.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -415012,7 +415509,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ear vesicle) AnnotationAssertion(rdfs:label "ear vesicle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray40.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray40.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -415127,7 +415624,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (intermediate mesoderm) AnnotationAssertion(rdfs:label "intermediate mesoderm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -415140,7 +415637,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "2"^^xsd:nonNegativeInteger) AnnotationAssertion(rdfs:label "pharyngeal arch 2") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png"^^xsd:anyURI) SubClassOf( ) # Class: (dorsolateral placode) @@ -415153,7 +415650,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (axial mesoderm) AnnotationAssertion(rdfs:label "axial mesoderm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -415199,7 +415696,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lens placode) AnnotationAssertion(rdfs:label "lens placode") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -415215,7 +415712,7 @@ AnnotationAssertion( "TODO - mesonephric portion of the nephric duct") AnnotationAssertion( "In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts.") AnnotationAssertion(rdfs:label "mesonephric duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -415225,7 +415722,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (neural plate) AnnotationAssertion(rdfs:label "neural plate") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -415245,7 +415742,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (paraxial mesoderm) AnnotationAssertion(rdfs:label "paraxial mesoderm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -415268,7 +415765,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'.") AnnotationAssertion(rdfs:label "floor plate") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/89/Gray642.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/89/Gray642.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -415293,7 +415790,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lateral plate mesoderm) AnnotationAssertion(rdfs:label "lateral plate mesoderm") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -415307,7 +415804,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The term 'myotome' is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class, myomere.") AnnotationAssertion(rdfs:label "myotome") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -415354,7 +415851,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sclerotome) AnnotationAssertion(rdfs:label "sclerotome") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -415388,7 +415885,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (optic stalk) AnnotationAssertion(rdfs:label "optic stalk") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -415433,7 +415930,7 @@ SubClassOf( "the relationship to mesoderm is weaker than develops_from in order to have classes such as 'head mesenchyme from mesoderm' make sense") AnnotationAssertion( "mesenchymal") AnnotationAssertion(rdfs:label "mesenchyme") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f4/Mesenchymal_Stem_Cell.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f4/Mesenchymal_Stem_Cell.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -415582,7 +416079,7 @@ AnnotationAssertion( "The chorion of placentals is bilaminar as in reptiles and birds, but forms from the trophoblast and includes the ajdacent mesodermal layer [ISBN:0073040584]") AnnotationAssertion(rdfs:comment "This term refers to the amniote structure. It is distinct from the concept of chorion in insects") AnnotationAssertion(rdfs:label "chorion membrane") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Gray24.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Gray24.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -415597,8 +416094,11 @@ AnnotationAssertion( "tracheal") AnnotationAssertion( "In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx.") AnnotationAssertion(rdfs:label "trachea") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -415699,7 +416199,7 @@ SubClassOf( (hard palate) AnnotationAssertion(rdfs:label "hard palate") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -415909,7 +416409,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (thoracic rib cage) AnnotationAssertion(rdfs:label "thoracic rib cage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -415919,7 +416419,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (neck of rib) AnnotationAssertion(rdfs:label "neck of rib") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -416872,6 +417372,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lobar bronchus of right lung) AnnotationAssertion(rdfs:label "lobar bronchus of right lung") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -416880,6 +417384,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lobar bronchus of left lung) AnnotationAssertion(rdfs:label "lobar bronchus of left lung") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -417275,7 +417783,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "neck bone") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (chest bone) @@ -417396,7 +417904,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cerebellar artery) AnnotationAssertion(rdfs:label "cerebellar artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -417449,7 +417957,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vein of lower lip") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -418407,7 +418915,11 @@ AnnotationAssertion( ) AnnotationAssertion( "in mammals the rings are incomplete, in avians the rings are complete.") AnnotationAssertion(rdfs:label "trachea cartilage") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -418549,7 +419061,7 @@ AnnotationAssertion( "indicis") AnnotationAssertion( "Anurans lack manual digit 1, so manual digit 2 is the digit after the prepollex (Phenotype RCN Oct 2012)") AnnotationAssertion(rdfs:label "manual digit 2") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d5/Index_finger.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d5/Index_finger.JPG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -418561,7 +419073,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "manual digit 3") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fd/Middle_finger.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/fd/Middle_finger.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -418573,7 +419085,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "manual digit 4") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/14/Ring_finger.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/14/Ring_finger.JPG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -418584,7 +419096,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (manual digit 5) AnnotationAssertion(rdfs:label "manual digit 5") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Pink.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Pink.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -418595,7 +419107,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pedal digit 1) AnnotationAssertion(rdfs:label "pedal digit 1") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/RightFootToes.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/RightFootToes.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -418635,7 +419147,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pedal digit 5) AnnotationAssertion(rdfs:label "pedal digit 5") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -418910,7 +419422,7 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf(Annotation(rdfs:seeAlso "https://purl.obolibrary.org/obo/uberon/tracker/324") ObjectSomeValuesFrom( )) # Class: (forelimb muscle) @@ -418975,7 +419487,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Most species that develop them normally have four per individual, two in the upper jaw and two in the lower, separated within each jaw by its incisors; humans and dogs are examples. In most animals, canines are the anterior-most teeth in the maxillary bone. The four canines in humans are the two maxillary canines and the two mandibular canines.") AnnotationAssertion(rdfs:label "cuspid") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/57/Azawakh_K9.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/57/Azawakh_K9.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419003,7 +419515,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mouth floor) -AnnotationAssertion( "reclassify after CARO2 overhaul") +AnnotationAssertion(rdfs:comment "EDITOR_NOTE reclassify after CARO2 overhaul") AnnotationAssertion(rdfs:label "mouth floor") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419013,7 +419525,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "we use this specifically for a jaw muscle that is innervates by the mandibular nerve.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "masticatory muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419025,7 +419537,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider extra class for fauces") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "palatal muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -419035,7 +419547,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (abdominal cavity) AnnotationAssertion(rdfs:label "abdominal cavity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419057,7 +419569,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Design pattern notes: check whether this fits the foramen design pattern") AnnotationAssertion(rdfs:label "foramen magnum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/39/Gray130.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/39/Gray130.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419076,7 +419588,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "sacral") AnnotationAssertion(rdfs:label "fused sacrum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray95.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray95.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -419100,7 +419614,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (acromioclavicular joint) AnnotationAssertion(rdfs:label "acromioclavicular joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -419112,14 +419626,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "retroperitoneal") AnnotationAssertion(rdfs:label "retroperitoneal space") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray1126.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray1126.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (atlanto-axial joint) AnnotationAssertion(rdfs:label "atlanto-axial joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419131,7 +419645,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "we follow FMA in making these joints part of digits. We include carpometacarpophalangeal joint as a synonym - these joints connect to the carpometacarpus - this is not necessarily inconsistent with the relationship for this class to metacarpal bone, as the carpometacarpus could be considered to have a metacarpal as part") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "metacarpophalangeal joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray337.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray337.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419142,7 +419656,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "we follow FMA in making these joints part of digits") AnnotationAssertion(rdfs:label "metatarsophalangeal joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419152,7 +419666,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (abdominal wall) AnnotationAssertion(rdfs:label "abdominal wall") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419160,7 +419674,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (subtalar joint) AnnotationAssertion(rdfs:label "subtalar joint") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419171,7 +419685,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In birds, the pubic symphysis is present only in the ostrich, and the two hip bones are usually widely separated, making it easier to lay large eggs - Romer, Alfred Sherwood; Parsons, Thomas S. (1977). The Vertebrate Body. Philadelphia, PA: Holt-Saunders International. pp. 188-192. ISBN 0-03-910284-X.") AnnotationAssertion(rdfs:label "pubic symphysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Gray321.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/51/Gray321.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -419185,7 +419699,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "There are two TMJs, one on either side, working in unison. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP].") AnnotationAssertion(rdfs:label "temporomandibular joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray309.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray309.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -419200,7 +419714,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "reduced in non-human primates") AnnotationAssertion( "bipedalism, running") AnnotationAssertion(rdfs:label "calcaneal tendon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -419214,7 +419728,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In most mammals the canal remains open, and the testis can pass from the scrotum to the abdominal cavity. In humans the canal closes after testicular descent[DOI:10.1046/j.1469-7580.2002.00087.x]") AnnotationAssertion( "In tammar wallabies, closes between days 50 and 60 pp[DOI:10.1046/j.1469-7580.2002.00087.x]") AnnotationAssertion(rdfs:label "inguinal canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray1227.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray1227.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -419249,7 +419763,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sinus of Valsalva) AnnotationAssertion(rdfs:label "sinus of Valsalva") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/Gray497.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/Gray497.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419258,7 +419772,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (circle of Willis) AnnotationAssertion(rdfs:label "circle of Willis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -419267,7 +419781,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brachiocephalic vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -419284,8 +419798,10 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "splenic vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -419332,7 +419848,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "may also be present in the mesentery of cats, in pancreas, in lymph nodes [ISBN:9780849388118]") AnnotationAssertion( "consists of a nerve fiber, an inner core of modified Schwann cells, a subcapsular space and a capsule [ISBN:9780849388118]") AnnotationAssertion(rdfs:label "Pacinian corpuscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray935.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray935.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419340,7 +419856,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anterior cranial fossa) AnnotationAssertion(rdfs:label "anterior cranial fossa") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419356,14 +419872,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (middle cranial fossa) AnnotationAssertion(rdfs:label "middle cranial fossa") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (vestibular nerve) AnnotationAssertion(rdfs:label "vestibular nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -419378,7 +419894,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "musculocutaneous nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Nerves_of_the_left_upper_extremity.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Nerves_of_the_left_upper_extremity.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -419388,7 +419904,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cervical nerve plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Gray784.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Gray784.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419403,14 +419919,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (intercostal nerve) AnnotationAssertion(rdfs:label "intercostal nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png"^^xsd:anyURI) SubClassOf( ) # Class: (mediastinum) AnnotationAssertion( "mediastinal") AnnotationAssertion(rdfs:label "mediastinum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -419668,7 +420184,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (gonadal vein) AnnotationAssertion(rdfs:label "gonadal vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419772,7 +420288,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "tiny neural arches present in Hagfish (which lack a true vertebraal column).") AnnotationAssertion( "The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone") AnnotationAssertion(rdfs:label "neural arch") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray82.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray82.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419883,7 +420399,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (CA3 field of hippocampus) AnnotationAssertion(rdfs:label "CA3 field of hippocampus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -419934,7 +420450,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fallopian tube") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -419952,7 +420468,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Sertoli cells secrete anti-Mullerian hormone (AMH) inducing the demise of this duct") AnnotationAssertion(rdfs:label "Mullerian duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -420166,7 +420682,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "revisit after standardizing terms 'primordium', 'anlagen', 'bud'") AnnotationAssertion(rdfs:label "pancreas primordium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -420178,8 +420694,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pancreatic epithelial bud) AnnotationAssertion(rdfs:label "pancreatic epithelial bud") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/49/Suckale08FBS_fig1_pancreas_development.jpeg"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/49/Suckale08FBS_fig1_pancreas_development.jpeg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -420192,7 +420708,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (dorsal pancreatic bud) AnnotationAssertion(rdfs:label "dorsal pancreatic bud") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -420202,7 +420718,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The ventral pancreatic bud becomes the head and uncinate process, and comes from the hepatic diverticulum[WP]") AnnotationAssertion( "the ventral pancreas and liver are derived from a common precursor cell population[PMID:16417468]. TODO - add this relationship.") AnnotationAssertion(rdfs:label "ventral pancreatic bud") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -420283,7 +420799,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (transverse gyrus of Heschl) AnnotationAssertion(rdfs:label "transverse gyrus of Heschl") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -420393,7 +420909,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (squamoparietal suture) AnnotationAssertion(rdfs:label "squamoparietal suture") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a8/Gray188-Squamosal_suture.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a8/Gray188-Squamosal_suture.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420440,7 +420956,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "add more specific classification e.g. anastomosing network - consider FMA:3726") AnnotationAssertion(rdfs:label "rete testis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -420454,7 +420970,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Disease notes: Eagle's syndrome") AnnotationAssertion(rdfs:label "styloid process of temporal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -420473,7 +420989,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pterygopalatine ganglion) AnnotationAssertion(rdfs:label "pterygopalatine ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -420481,7 +420997,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (otic ganglion) AnnotationAssertion(rdfs:label "otic ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray783.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray783.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420595,6 +421111,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "valvular") AnnotationAssertion(rdfs:label "valve") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420631,7 +421149,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Kardong says absent in adult tetrapods, check AAO") AnnotationAssertion(rdfs:label "conus arteriosus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420640,7 +421158,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "uterine tube infundibulum") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420701,14 +421219,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (fourth ventricle median aperture) AnnotationAssertion(rdfs:label "fourth ventricle median aperture") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (fourth ventricle lateral aperture) AnnotationAssertion(rdfs:label "fourth ventricle lateral aperture") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/54/Lateral_ventricle.gif"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/54/Lateral_ventricle.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420740,7 +421258,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cervical vertebra 1 arcus anterior) AnnotationAssertion(rdfs:label "cervical vertebra 1 arcus anterior") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9a/Arcusanterioratlantis.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9a/Arcusanterioratlantis.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -420768,7 +421286,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (hyoid bone body) AnnotationAssertion(rdfs:label "hyoid bone body") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420866,7 +421384,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (labium minora) AnnotationAssertion(rdfs:label "labium minora") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Vulva_labeled_english.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Vulva_labeled_english.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420884,7 +421402,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Not to be confused with 'dermatome segment of skin'.") AnnotationAssertion(rdfs:label "dermatome") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -420968,6 +421486,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chorionic plate") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -420988,7 +421507,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "a mixture of episcleral venous blood and aqueous humor mix in this combined channel[http://www.atlasophthalmology.com]") AnnotationAssertion(rdfs:label "aqueous vein") -AnnotationAssertion( "http://www.atlasophthalmology.com/media/Aqeous+Vein+Prep.m4v"^^xsd:anyURI) +AnnotationAssertion( "http://www.atlasophthalmology.com/media/Aqeous+Vein+Prep.m4v"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -421064,7 +421583,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal'") AnnotationAssertion(rdfs:label "semicircular canal ampulla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -421239,14 +421758,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (frontonasal prominence) AnnotationAssertion(rdfs:label "frontonasal prominence") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/98/Gray44.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/98/Gray44.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lateral nasal prominence) AnnotationAssertion(rdfs:label "lateral nasal prominence") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -421255,7 +421774,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Fusion of right and left medial nasal processes forms a primary palate rostrally and the nasal septum caudally. The incisive bone, including upper incisor teeth and the rostral up- per lip, are derived from the primary palate. The nasal septum consists of bone, cartilage, and a patch of soft tissue membrane that separates right & left halves of the nasal cavity.") AnnotationAssertion(rdfs:label "medial nasal prominence") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/85/Gray45.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/85/Gray45.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -421385,7 +421904,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (labium majora) AnnotationAssertion(rdfs:label "labium majora") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -421401,8 +421920,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vena cava) AnnotationAssertion(rdfs:label "vena cava") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta,_trachea,_esophagus_and_other_heart_structures.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7c/Heart_numlabels.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta,_trachea,_esophagus_and_other_heart_structures.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7c/Heart_numlabels.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -421467,7 +421988,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal collecting system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -421516,7 +422037,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "check relationships.") AnnotationAssertion(rdfs:comment "The clivus is an important landmark for checking for anatomical atlanto-occipital alignment; the clivus, when viewed on a lateral C-spine X-ray, forms a line which, if extended, is known as Wackenheim's clivus line. Wackenheim's clivus line should pass through the dens of the axis or be tangential to it.") AnnotationAssertion(rdfs:label "clivus of occipital bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c5/Clivus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c5/Clivus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -421557,7 +422078,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tympanic cavity) AnnotationAssertion(rdfs:label "tympanic cavity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -421685,7 +422206,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 \"Developmental Biology\"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode [PMID:16496288]") AnnotationAssertion(rdfs:label "optic vesicle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray863.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray863.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -421707,7 +422228,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check ZFA link. note this is part of medulla in ZFA, but we do not include this link here as it leads to inconsistencies") AnnotationAssertion(rdfs:label "trigeminal sensory nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -421801,6 +422322,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cardiac vein) AnnotationAssertion(rdfs:label "cardiac vein") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -421853,7 +422376,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (spinal cord ventral commissure) AnnotationAssertion(rdfs:label "spinal cord ventral commissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray664.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray664.png"^^xsd:anyURI) SubClassOf( ) # Class: (internal genitalia) @@ -421994,7 +422517,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "check relationship to distal tubule") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "loop of Henle ascending limb thin segment") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -422020,7 +422543,11 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney pyramid") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -422231,6 +422758,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (urinary bladder neck smooth muscle) AnnotationAssertion(rdfs:label "urinary bladder neck smooth muscle") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -422630,7 +423159,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support[WP]") AnnotationAssertion(rdfs:label "cardiac skeleton") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -422685,7 +423214,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In human anatomy, the distal phalanges of the four fingers and toes articulate proximally with the intermediate phalanges at the distal interphalangeal joints (DIP); in the thumb and big toe, with only two phalanges, the distal phalanges articulate proximally with the proximal phalanges. The distal phalanges carry and shape nails and claws and are therefore occasionally referred to as the ungual phalanges. The distal phalanges are cone-shaped in most mammals, including most primates, but relatively wide and flat in humans.") AnnotationAssertion(rdfs:label "distal phalanx") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/Scheme_human_hand_bones-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ab/Scheme_human_hand_bones-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -423044,7 +423573,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "allantoic") AnnotationAssertion( "a diverticulum of the hindgut endoderm [ISBN:0073040584 (Vertebrates, Kardong)]") AnnotationAssertion(rdfs:label "allantois") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray25.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray25.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -423056,7 +423585,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "primitive streak") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray13.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray13.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -423085,7 +423614,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "gubernacular") AnnotationAssertion(rdfs:label "gubernaculum (male or female)") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -423140,7 +423669,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "note that media, dorsal fins etc have AERs.") AnnotationAssertion( "maintaining mesenchyme in plastic proliferating state; maintaining expression of A-P axis genes; interacting with D-V proteins. Genes: AER induced by Fgf10 in mesenchyme. AER secretes Fgf8, which stimulates mitosis in the mesenchyme causing Fgf10 production - positive feedback loop") AnnotationAssertion(rdfs:label "apical ectodermal ridge") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/56/Limbbuddiagram.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/56/Limbbuddiagram.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -423198,7 +423727,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "1"^^xsd:nonNegativeInteger) AnnotationAssertion(rdfs:label "pharyngeal arch 1") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png"^^xsd:anyURI) SubClassOf( ) # Class: (pharyngeal arch artery) @@ -423208,7 +423737,7 @@ AnnotationAssertion( "Number varies - Lampreys have 8, hagfishes 15; only up to 6 appear in embryonic development in most gnathostome fishes and all tetrapods") AnnotationAssertion( "The third, fourth, and sixth arches, along with the seventh intersegmental arteries and the left dorsal aorta, are the primary contributors to the normal aortic arch and its major thoracic branches") AnnotationAssertion(rdfs:label "pharyngeal arch artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/84/Gray473.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/84/Gray473.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -423576,7 +424105,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (proximal epiphysis of humerus) AnnotationAssertion(rdfs:label "proximal epiphysis of humerus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray207.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray207.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -423894,8 +424423,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (carpal region) AnnotationAssertion(rdfs:label "carpal region") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Human_wrist.png"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cc/Hand_parts.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4a/Human_wrist.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/cc/Hand_parts.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -423910,7 +424439,7 @@ AnnotationAssertion( "metacarpal") AnnotationAssertion( "Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton") AnnotationAssertion(rdfs:label "metacarpus region") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -423922,7 +424451,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this term refers to the limb segment. See also: tarsal bones and tarsal skeleton") AnnotationAssertion(rdfs:label "tarsal region") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -423989,7 +424518,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "musculature of neck") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (musculature of leg) @@ -424380,7 +424909,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "alveolar process of maxilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/71/Gray157.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/71/Gray157.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424388,7 +424917,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (alveolar ridge of mandible) AnnotationAssertion(rdfs:label "alveolar ridge of mandible") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Mandibule.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Mandibule.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424445,6 +424974,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider merging with parent") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymph vasculature") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424454,6 +424985,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "blood vasculature") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -424464,6 +424997,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left kidney") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Left.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424472,6 +425008,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "right kidney") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Right.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424490,7 +425029,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (external capsule of telencephalon) AnnotationAssertion(rdfs:label "external capsule of telencephalon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424504,6 +425043,10 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left eye") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -424513,6 +425056,10 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "right eye") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -424598,7 +425145,7 @@ AnnotationAssertion( ) AnnotationAssertion( "1"^^xsd:nonNegativeInteger) AnnotationAssertion(rdfs:label "rib 1") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray124.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray124.png"^^xsd:anyURI) SubClassOf( ) # Class: (rib 12) @@ -424607,7 +425154,7 @@ AnnotationAssertion( ) AnnotationAssertion( "12"^^xsd:nonNegativeInteger) AnnotationAssertion(rdfs:label "rib 12") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray128.png"^^xsd:anyURI) SubClassOf( ) # Class: (lumbar vertebra 1) @@ -424683,7 +425230,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal afferent arteriole") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -424698,7 +425245,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal efferent arteriole") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424756,7 +425303,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "infraorbital artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray511.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray511.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -424785,7 +425332,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check AAO:0000521-pterygoid and MA:0001471-pterygoid bone. MA also has 'inner plate of pterygoid process' as a syn for MA:0001471, FMA has lateral/medial plates. Seems likely inner = lateral (see MP:0004452).") AnnotationAssertion(rdfs:label "sphenoid bone pterygoid process") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -424804,7 +425351,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (scapula spine) AnnotationAssertion(rdfs:label "scapula spine") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424819,7 +425366,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mandible condylar process) AnnotationAssertion(rdfs:label "mandible condylar process") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Processuscondylarismandibulae.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Processuscondylarismandibulae.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424829,7 +425376,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mandible coronoid process) AnnotationAssertion(rdfs:label "mandible coronoid process") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/74/Processuscoronoideusmandibulae.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/74/Processuscoronoideusmandibulae.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424902,7 +425449,7 @@ AnnotationAssertion( "ependymal") AnnotationAssertion( "unlike other epithelia, there is no basement membrane under the ependymal epithelium[ISBN:0387949542]") AnnotationAssertion(rdfs:label "ependyma") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray667.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray667.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -424939,7 +425486,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (spinal cord gray commissure) AnnotationAssertion(rdfs:label "spinal cord gray commissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -424956,7 +425503,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (body of fornix) AnnotationAssertion(rdfs:label "body of fornix") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -424980,7 +425527,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "we treat NR obscurus, NR magnus etc as parts of the raphe nuclei. This is consistent with treatment in FMA, where the class is 'set of raphe nuclei'") AnnotationAssertion(rdfs:label "raphe nuclei") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -424989,7 +425536,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "costo-cervical trunk") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Costocervical_trunk_with_branches.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Costocervical_trunk_with_branches.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -425106,7 +425653,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check relationship to bulbus arteriosus") AnnotationAssertion(rdfs:label "bulbus cordis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray466.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray466.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -425159,7 +425706,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (jugular vein) AnnotationAssertion(rdfs:label "jugular vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -425167,7 +425714,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (corpus cavernosum penis) AnnotationAssertion(rdfs:label "corpus cavernosum penis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -425178,7 +425725,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (septum pellucidum) AnnotationAssertion(rdfs:label "septum pellucidum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -425189,7 +425736,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (annulus fibrosus disci intervertebralis) AnnotationAssertion(rdfs:label "annulus fibrosus disci intervertebralis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d9/Cervical_vertebra_english.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d9/Cervical_vertebra_english.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -425211,7 +425758,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney arcuate vein") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -425222,7 +425769,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebellar vermis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -425234,7 +425783,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (crista ampullaris) AnnotationAssertion(rdfs:label "crista ampullaris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Semicircular_canal_-_ampulla.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Semicircular_canal_-_ampulla.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -425244,7 +425793,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "interlobular artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -425252,7 +425801,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (medial palpebral ligament) AnnotationAssertion(rdfs:label "medial palpebral ligament") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -425261,7 +425810,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "piriform cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -425272,7 +425823,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - is this a vein or set of veins? in MA it is a venous blood vessel") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vasa recta") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -425540,7 +426091,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (diaphysis) AnnotationAssertion(rdfs:label "diaphysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg"^^xsd:anyURI) SubClassOf( ) # Class: (articular system) @@ -425558,7 +426109,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In addition to tetrapods, the lungfish has internal nostrils too. In tetrapods the exhalant nostril (choana) empties into the buccal cavity.") AnnotationAssertion(rdfs:label "posterior nasal aperture") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/87/Gray855.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/87/Gray855.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -425785,7 +426336,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (blood vessel layer) AnnotationAssertion(rdfs:label "blood vessel layer") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/61/Blood_vessels.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/61/Blood_vessels.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -426209,7 +426760,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check relationship to LPM") AnnotationAssertion(rdfs:label "splanchnopleure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -426220,7 +426771,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Gives rise to the paired appendages in jawed vertebrates. a persistent somatopleure through the redistribution and expansion of the lateral plate mesoderm is a synapomorphy for gnathostomes and a critical step in generating a novel developmental module with dramatic evolutionary potentia (Tulenko et al. 2012) http://burkelab.research.wesleyan.edu/current-projects/lamprey/") AnnotationAssertion( "sources differ as to whether this is part-of or develops-from the LPM") AnnotationAssertion(rdfs:label "somatopleure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -426453,7 +427004,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (biliary bud) AnnotationAssertion(rdfs:label "biliary bud") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -426466,7 +427017,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hepatopancreatic ampulla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Biliary_system_new.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Biliary_system_new.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -426475,7 +427026,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (duodenal papilla) AnnotationAssertion(rdfs:label "duodenal papilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -426483,7 +427035,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sphincter of hepatopancreatic ampulla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -426509,8 +427061,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (external urethral sphincter) AnnotationAssertion(rdfs:label "external urethral sphincter") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/70/Gray1166.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/70/Gray1166.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -427244,7 +427796,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mediastinum testis) AnnotationAssertion(rdfs:label "mediastinum testis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -427527,7 +428079,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "descending thin limb") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/2276") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -427864,7 +428416,7 @@ SubClassOf( ) AnnotationAssertion(rdfs:label "renal interlobular vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -428278,7 +428830,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (osseus labyrinth vestibule) AnnotationAssertion(rdfs:label "osseus labyrinth vestibule") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray919.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray919.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -428521,7 +429073,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - resolve space vs structure conflation. We follow FMA in making this and the various ventricles a structure - it follows from this that strutures such as the tela choroidea and choroid plexuses can be part of the ventricles and ventricular system. Note: see also the class 'neuraxis cavity'") AnnotationAssertion(rdfs:label "ventricular system of central nervous system") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -428562,7 +429114,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tela choroidea of third ventricle) AnnotationAssertion(rdfs:label "tela choroidea of third ventricle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray723.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray723.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -428581,7 +429133,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes") AnnotationAssertion(rdfs:label "myelencephalon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -428613,7 +429165,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check developmental relationships. merge with urogenital ridge?") AnnotationAssertion( "in eutherians, SRY transforms the indifferent gonad into testes") AnnotationAssertion(rdfs:label "gonadal ridge") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1106.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1106.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -428661,7 +429213,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "FMA has FMA:27886 skin of prepuce of clitoris") AnnotationAssertion(rdfs:label "prepuce of clitoris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Clitoris_outer_anatomy.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Clitoris_outer_anatomy.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -428946,7 +429498,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (peritoneal vaginal process) AnnotationAssertion(rdfs:label "peritoneal vaginal process") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Mesorchium.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ed/Mesorchium.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -429004,7 +429556,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (spermatic cord) AnnotationAssertion(rdfs:label "spermatic cord") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -429035,7 +429587,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (malleus neck) AnnotationAssertion(rdfs:label "malleus neck") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429079,14 +429631,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (inferior glossopharyngeal IX ganglion) AnnotationAssertion(rdfs:label "inferior glossopharyngeal IX ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) SubClassOf( ) # Class: (superior glossopharyngeal IX ganglion) AnnotationAssertion(rdfs:comment "Synonym modified from WP original") AnnotationAssertion(rdfs:label "superior glossopharyngeal IX ganglion") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png"^^xsd:anyURI) SubClassOf( ) # Class: (vagus X ganglion) @@ -429386,7 +429938,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "All vertebrates possess at least 4 circumventricular organs (including the hypothalamus) which can monitor the contents of the cerebrospinal fluid and secrete additional substances into it. (Butler, 1996, p. 330)") AnnotationAssertion( "CVOs contain neural tissue and are an integral part of neuroendocrine function; all of the CVOs, besides the subcommissural organ, contain extensive vasculature and fenestrated capillaries which leads to a leaky BBB at the site of the organs; the lack of a BBB allows CVOs to act as an alternative route for peptides and hormones in the neural tissue to the peripheral blood stream, while still protecting it from toxic substances") AnnotationAssertion(rdfs:label "circumventricular organ") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429424,7 +429976,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Develeopment notes: As the eye starts to develop, a gap opens on the underside of each eye bud. This gap provides a way for the developing eye to be nourished. This gap, called the optic fissure, has to close before the eye is fully developed. Coloboma is the incomplete closer of the optic fissure") AnnotationAssertion(rdfs:label "optic fissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/98/Gray865.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/98/Gray865.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -429433,7 +429985,7 @@ DisjointClasses( (spinocerebellar tract) AnnotationAssertion(rdfs:label "spinocerebellar tract") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429441,7 +429993,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Sonic hedgehog (Shh) produced by ZPA represents the key mediator of the polarizing activity that regulates patterning of the limb/fin along the anterio-posterior (A-P) axis[MP:0012528]") AnnotationAssertion(rdfs:label "zone of polarizing activity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/56/Limbbuddiagram.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/56/Limbbuddiagram.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429573,7 +430125,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ansa cervicalis) AnnotationAssertion(rdfs:label "ansa cervicalis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -429600,7 +430152,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "common hepatic artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -429609,7 +430163,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "coronary sinus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429620,7 +430176,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ductus arteriosus) AnnotationAssertion(rdfs:label "ductus arteriosus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -429635,7 +430191,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "abdominal external oblique muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429657,7 +430213,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (foramen rotundum) AnnotationAssertion(rdfs:label "foramen rotundum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -429667,7 +430223,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (greater omentum) AnnotationAssertion(rdfs:label "greater omentum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -429679,7 +430235,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (greater sac) AnnotationAssertion(rdfs:label "greater sac") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -429715,7 +430271,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (abdominal internal oblique muscle) AnnotationAssertion(rdfs:label "abdominal internal oblique muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -429735,7 +430291,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (jugular foramen) AnnotationAssertion(rdfs:label "jugular foramen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Foramenjugulare.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Foramenjugulare.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429748,6 +430304,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left thymus lobe") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429775,7 +430333,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Axial muscle group[Kardong]") AnnotationAssertion(rdfs:label "levator scapulae muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bc/Levator_scapulae.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bc/Levator_scapulae.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -429804,7 +430362,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "subcapsular sinus of lymph node") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray597.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray597.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429817,7 +430375,7 @@ AnnotationAssertion( "Human variation notes: Variations occur in the extension over the face and over the clavicle and shoulder; it may be absent or interdigitate with the muscle of the opposite side in front of the neck; attachment to clavicle, mastoid process or occipital bone occurs. A more or less independent fasciculus, the occipitalis minor, may extend from the fascia over the trapezius to fascia over the insertion of the sternocleidomastoideus.") AnnotationAssertion(rdfs:label "platysma") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/472"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Platysma.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Platysma.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429830,6 +430388,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "right thymus lobe") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429866,7 +430426,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sigmoid sinus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -429895,7 +430455,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (superior orbital fissure) AnnotationAssertion(rdfs:label "superior orbital fissure") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8e/Orbita_mensch.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8e/Orbita_mensch.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429925,7 +430485,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this class should be subdivided into the embryonic structure and the vestigial adult remnant, a small endocardialfold") AnnotationAssertion(rdfs:label "valve of inferior vena cava") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -429934,7 +430494,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "the MA placement should be checked") AnnotationAssertion(rdfs:label "venous dural sinus") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -429945,7 +430505,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vitelline vein) AnnotationAssertion(rdfs:label "vitelline vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray475.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray475.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -430398,7 +430958,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "\"The primitive gut is enveloped by a mesentery that has a dorsal and a ventral aspect. The ventral mesentery degenerates during development with the exception of the foregut ventral mesentery, which develops into specialized structures (see foregut embryology).\" [http://sprojects.mmi.mcgill.ca/embryology/gi/pgm.htm]. todo - check") AnnotationAssertion(rdfs:label "ventral mesogastrium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray984.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray984.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -431080,7 +431640,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - note terminological problems. WP says tunica external layer of blood vessel. FMA says tunica externa = adventitia, and is FMA adventitia covers other kinds of vessels. Here we opt for a lengthier name that attempts to disambiguate. There is no precise FMA equivalent, as FMA has tunica externa of arteries, veins, genital ducts etc as siblings") AnnotationAssertion(rdfs:label "tunica adventitia of blood vessel") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -431100,7 +431660,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "adventitia") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -431108,7 +431668,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (bone foramen) AnnotationAssertion(rdfs:label "bone foramen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -431117,7 +431677,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "In teleost fishes the opening is wider that in mammals. Due to the longer and deeper shape in mammals, this is usually called the optic canal; sometimes the term optic foramen may be used for the opening of the canal, but here we use this term to denote the entire space together with surrounding bone surface.") AnnotationAssertion(rdfs:label "optic foramen") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8e/Orbita_mensch.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/8e/Orbita_mensch.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -431187,7 +431747,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "todo - use to define cloacal septation in GO") AnnotationAssertion(rdfs:label "urorectal septum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray992.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray992.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -431219,7 +431779,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (glomerular basement membrane) AnnotationAssertion(rdfs:label "glomerular basement membrane") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/de/PhysiologieGlom%C3%A9rulaire.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/de/PhysiologieGlom%C3%A9rulaire.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -431282,7 +431842,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (dorsal aorta) AnnotationAssertion(rdfs:label "dorsal aorta") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray459.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray459.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -431343,7 +431903,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check ZFA") AnnotationAssertion(rdfs:label "cephalic midbrain flexure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray651.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray651.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -431479,7 +432039,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (maxillary prominence) AnnotationAssertion(rdfs:label "maxillary prominence") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -431498,7 +432058,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "palatine process of maxilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -431541,7 +432101,7 @@ AnnotationAssertion( "GT development is indistinguishable in male and female mouse embryos until approximately E16, when the urethral plate begins to be masculinized to form the penile urethra, marking the beginning of an androgen-dependent phase of sexual differentiation[MP:0011771]") AnnotationAssertion( "todo - add taxon constraints") AnnotationAssertion(rdfs:label "undifferentiated genital tubercle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray1119.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray1119.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -431552,7 +432112,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Note we use overlaps as the relationship to the arches") AnnotationAssertion(rdfs:label "pharyngeal cleft") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -431570,7 +432130,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "neural tube alar plate") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/336"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Gray646.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Gray646.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -431632,7 +432192,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (duct of seminal vesicle) AnnotationAssertion(rdfs:label "duct of seminal vesicle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1160.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1160.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -431729,7 +432289,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "axial skeleton plus cranial skeleton") AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Axial_skeleton_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Axial_skeleton_diagram.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -431801,7 +432361,15 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO check syns - ligaments") AnnotationAssertion(rdfs:label "eye trabecular meshwork") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -431835,7 +432403,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (posterior cerebellomedullary cistern) AnnotationAssertion(rdfs:label "posterior cerebellomedullary cistern") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png"^^xsd:anyURI) SubClassOf( ) # Class: (hair follicle bulge) @@ -431881,7 +432449,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pectinate muscle) AnnotationAssertion(rdfs:label "pectinate muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -431897,7 +432465,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (Bachmann's bundle) AnnotationAssertion(rdfs:label "Bachmann's bundle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/05/ConductionsystemoftheheartwithouttheHeart.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/05/ConductionsystemoftheheartwithouttheHeart.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -432011,7 +432579,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (chorda tendineae) AnnotationAssertion(rdfs:label "chorda tendineae") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -432059,7 +432627,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Development notes:; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult[MP:0010664]") AnnotationAssertion(rdfs:label "vitelline artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -432124,7 +432692,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cusp of cardiac valve) AnnotationAssertion(rdfs:label "cusp of cardiac valve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -432133,7 +432701,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (hyaloid canal) AnnotationAssertion(rdfs:label "hyaloid canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -432200,7 +432768,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (falx cerebri) AnnotationAssertion(rdfs:label "falx cerebri") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/ff/Falxcerebri.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/ff/Falxcerebri.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -432223,7 +432791,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - class as endochondral bone, check species") AnnotationAssertion(rdfs:label "zygapophysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3e/Processusarticularissuperiorvertebrae.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3e/Processusarticularissuperiorvertebrae.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -432318,6 +432886,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fundus of urinary bladder") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -432344,6 +432914,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cuneus cortex") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -432352,6 +432924,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "precuneus cortex") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -432515,7 +433089,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (aortico-pulmonary spiral septum) AnnotationAssertion(rdfs:label "aortico-pulmonary spiral septum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray470.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray470.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -432552,7 +433126,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (buccopharyngeal membrane) AnnotationAssertion(rdfs:label "buccopharyngeal membrane") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -432600,7 +433174,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "it is ultimately obliterated by the fusion of its walls.") AnnotationAssertion(rdfs:label "cervical sinus of His") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -432608,7 +433182,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cloacal membrane) AnnotationAssertion(rdfs:label "cloacal membrane") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray991.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray991.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -432832,7 +433406,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "in FMA this is a cavity, whereas in EHDAA2 it is an epithelial sac") AnnotationAssertion(rdfs:label "infundibular recess of 3rd ventricle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray654.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray654.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -432941,7 +433515,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "On the nasal surface of the body of the maxilla, in front of the opening of the sinus is a deep groove, the lacrimal groove (or lacrimal sulcus), which is converted into the nasolacrimal canal, by the lacrimal bone and inferior nasal concha; this canal opens into the inferior meatus of the nose and transmits the nasolacrimal duct[WP] See also: oblique facial cleft") AnnotationAssertion(rdfs:label "nasolacrimal groove") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray163.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray163.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -433251,7 +433825,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Taxon notes (via VHOG): \"The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.\" Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331") AnnotationAssertion(rdfs:label "inferior oblique extraocular muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -433261,7 +433835,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior oblique extraocular muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -433271,14 +433845,14 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior rectus extraocular muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) SubClassOf( ) # Class: (superior rectus extraocular muscle) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior rectus extraocular muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -433525,7 +434099,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (Brodmann (1909) area 46) AnnotationAssertion(rdfs:label "Brodmann (1909) area 46") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cd/Brodmann_area_46.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cd/Brodmann_area_46.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -433798,7 +434372,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pectinate line) AnnotationAssertion(rdfs:label "pectinate line") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Hemorrhoid.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Hemorrhoid.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -433824,7 +434398,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (round ligament of uterus) AnnotationAssertion(rdfs:label "round ligament of uterus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -433908,7 +434482,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this is placed as part of lower jaw region, as in this ontology the skeleton does not include joints") AnnotationAssertion(rdfs:label "mandibular symphysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(2 ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -433917,7 +434491,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (corpus cavernosum clitoridis) AnnotationAssertion(rdfs:label "corpus cavernosum clitoridis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -433954,7 +434528,7 @@ DisjointClasses( ObjectSomeValues # Class: (aponeurosis) AnnotationAssertion(rdfs:label "aponeurosis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Aponeurosis.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e6/Aponeurosis.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -433994,7 +434568,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (left atrium auricular region) AnnotationAssertion(rdfs:label "left atrium auricular region") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray494.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray494.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434021,7 +434595,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In humans is situated on its superior border and serves for the attachment of various muscles") AnnotationAssertion(rdfs:label "coracoid process of scapula") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -434096,7 +434670,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "tunica vaginalis testis has two layers: visceral and parietal; the visceral layer lies on the anterolateral surface of the testis and epididymis; the parietal layer lines the inner surface of the scrotal sac") AnnotationAssertion(rdfs:label "tunica vaginalis testis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -434117,7 +434691,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (glans clitoris) AnnotationAssertion(rdfs:label "glans clitoris") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -434141,7 +434715,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (glenoid fossa) AnnotationAssertion(rdfs:label "glenoid fossa") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray328.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray328.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -434171,7 +434745,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (epicranial aponeurosis) AnnotationAssertion(rdfs:label "epicranial aponeurosis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434187,7 +434761,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (carotid canal) AnnotationAssertion(rdfs:label "carotid canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Gray141.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Gray141.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434216,7 +434790,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mandibular canal) AnnotationAssertion(rdfs:label "mandibular canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -434235,7 +434809,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (muscularis mucosa) AnnotationAssertion(rdfs:label "muscularis mucosa") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1058.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1058.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434263,7 +434837,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In humans it generally closes in 6-8 weeks from birth. A delay in closure is associated with congential hypothyroidism") AnnotationAssertion(rdfs:label "posterior fontanelle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -434278,7 +434852,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (frenulum of tongue) AnnotationAssertion(rdfs:label "frenulum of tongue") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -434290,7 +434864,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "TODO - check neural vs vertebral canal; embryonic vs adult?") AnnotationAssertion(rdfs:label "vertebral canal") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray82.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray82.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434316,7 +434890,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "consider merging with FC of thyroid") AnnotationAssertion(rdfs:label "foramen cecum of tongue") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a3/Foramen_caecum.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/a/a3/Foramen_caecum.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434363,7 +434937,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medial pterygoid muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Musculuspterygoideusmedialis.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ec/Musculuspterygoideusmedialis.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -434375,7 +434949,7 @@ AnnotationAssertion( "only masticatory muscle that depresses mandible (opens jaw)") AnnotationAssertion(rdfs:label "lateral pterygoid muscle") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/539"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bb/Musculuspterygoideuslateralis.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bb/Musculuspterygoideuslateralis.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434397,7 +434971,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The mammalian alisphenoid forms the greater wing of the sphenoid bone, which contributes a small part of the skull vault just caudal to the orbit, and also underlies the basal part of the frontal and parietal bones in the fetus (Iseki et al. 1997)") AnnotationAssertion(rdfs:label "alisphenoid bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -434426,7 +435000,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cochlear modiolus) AnnotationAssertion(rdfs:label "cochlear modiolus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434464,7 +435038,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "canthal") AnnotationAssertion(rdfs:label "canthus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434476,7 +435050,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview]") AnnotationAssertion(rdfs:label "median lingual swelling") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -434486,7 +435060,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "paired") AnnotationAssertion(rdfs:label "lateral lingual swelling") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -434497,7 +435071,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This location has parts such as blood vessels etc. See PMC2868485, http://www.ncbi.nlm.nih.gov/pubmed/2695343") AnnotationAssertion(rdfs:label "corneo-scleral junction") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Limbus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3d/Limbus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -434517,7 +435091,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "head of femur") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434648,7 +435222,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "check AAO") AnnotationAssertion(rdfs:label "olecranon") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434656,7 +435230,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mental foramen) AnnotationAssertion(rdfs:label "mental foramen") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -434721,7 +435295,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ventral ramus of spinal nerve) AnnotationAssertion(rdfs:label "ventral ramus of spinal nerve") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434731,7 +435305,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (dorsal ramus of spinal nerve) AnnotationAssertion(rdfs:label "dorsal ramus of spinal nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -434787,7 +435361,7 @@ AnnotationAssertion( "scapular") AnnotationAssertion( "chick scapula is of dual origin and segmentally organized") AnnotationAssertion(rdfs:label "scapula") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -434844,7 +435418,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (diaphysis of femur) AnnotationAssertion(rdfs:label "diaphysis of femur") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray244.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray244.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -434888,7 +435462,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anal part of perineum) AnnotationAssertion(rdfs:label "anal part of perineum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -434960,7 +435534,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ala of nose) AnnotationAssertion(rdfs:label "ala of nose") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -435175,7 +435749,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "There are two basic designs for efferent ductule structure: a) multiple entries into the epididymis, as seen in most large mammals. In humans and other large mammals, there are approximately 15-20 efferent ducts, which also occupy nearly one third of the head of the epididymis. b) single entry, as seen in most small animals such as rodents, whereby the 3-6 ductules merge into a single small ductule prior to entering the epididymis") AnnotationAssertion(rdfs:label "efferent duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -435189,6 +435763,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "we use this as a generic grouping class for a number of taxa") AnnotationAssertion(rdfs:label "male genital duct") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -435397,7 +435972,7 @@ AnnotationAssertion( "The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively") AnnotationAssertion( "The bulk of the villi consist of connective tissues in which blood vessels are found. Most of the cells in the connective tissue core of the villi are fibroblasts. Macrophages known as Hofbauer cells are also present.") AnnotationAssertion(rdfs:label "chorionic villus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray29.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray29.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -435407,7 +435982,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "GAT in FMA.") AnnotationAssertion(rdfs:label "deciduous tooth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Deciduous_teeth_by_David_Shankbone.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Deciduous_teeth_by_David_Shankbone.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -435431,7 +436006,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neck of femur") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -435443,7 +436018,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4") AnnotationAssertion(rdfs:label "premolar tooth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) @@ -435746,7 +436321,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "See comments for 'vestibular nuclear complex.") AnnotationAssertion(rdfs:label "vestibular nucleus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -435834,7 +436409,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lingual tonsil) AnnotationAssertion(rdfs:label "lingual tonsil") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -436217,7 +436792,7 @@ SubClassOf( ) AnnotationAssertion(rdfs:label "internal pudendal artery") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -436253,7 +436828,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "this class groups together accessory (dorsal) and main (ventral) pancreatic ducts") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pancreatic duct") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -436275,7 +436850,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cartilage of pharyngotympanic tube) AnnotationAssertion(rdfs:label "cartilage of pharyngotympanic tube") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray915.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray915.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -436283,7 +436858,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (bony part of pharyngotympanic tube) AnnotationAssertion(rdfs:label "bony part of pharyngotympanic tube") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -436314,7 +436889,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "You will still see the statement in some texts that the parts of the forestomach are derived from the embryonic esophagus, and that's the reason why (like the esophagus) they're lined with stratified squamous epithelium. This is open to doubt. While there is no doubt that the rumen, reticulum, and omasum are all derived from the embryonic foregut, there is evidence to indicate that all three come from that an area of the foregut homologous to the part that develops into the single stomach of non-ruminants. If this is so, then the forestomach can be considered diverticula (or derivatives) of the stomach proper, not the esophagus, despite the nature of the lining -- http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab21/Examples/exrumen.htm") AnnotationAssertion(rdfs:label "ruminant forestomach") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_(PSF).png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_(PSF).png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -436323,7 +436898,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "omasal") AnnotationAssertion(rdfs:label "omasum") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_(PSF).png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_(PSF).png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -436340,7 +436915,7 @@ AnnotationAssertion( "Coarse, partially chewed food is stored and churned in the rumen until the animal finds circumstances convenient for rumination. When this occurs, little balls of food are regurgitated through the esophagus into the mouth, and are subjected to a second more thorough mastication, swallowed, and passed on into other parts of the compound stomach. (From Black's Veterinary Dictionary, 17th ed)") AnnotationAssertion( "There is no muscularis mucosae in the rumen. The rumen is lined by mucous membrane containing no digestive glands, but mucus-secreting glands are present in large numbers") AnnotationAssertion(rdfs:label "rumen") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_(PSF).png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_(PSF).png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -436349,7 +436924,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Consider classifying each subdivision as 'stomach chamber'") AnnotationAssertion(rdfs:label "ruminant stomach") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_(PSF).png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_(PSF).png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -436746,7 +437321,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (trigeminal nuclear complex) AnnotationAssertion(rdfs:label "trigeminal nuclear complex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -436883,7 +437458,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (gustatory pore) AnnotationAssertion(rdfs:label "gustatory pore") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -437172,7 +437747,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "GAT in FMA") AnnotationAssertion(rdfs:label "secondary tooth") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -437333,7 +437908,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pectoral girdle skeleton) AnnotationAssertion(rdfs:label "pectoral girdle skeleton") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Pectoral_girdle_front_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Pectoral_girdle_front_diagram.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -437345,7 +437920,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "need to resolve whether this is a paired structure or a single belt (Paired in FMA - implicitly paired in VSAO)") AnnotationAssertion(rdfs:label "pelvic girdle skeleton") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray242.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray242.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -437536,7 +438111,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nail plate") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9f/Fingernail_label.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9f/Fingernail_label.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -437548,7 +438123,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "mental") AnnotationAssertion( "In humans, the chin is the lowermost part of the face. It is formed by the lower front of the mandible. The chin developed as a point of muscular attachment facilitating minute movements of the lips associated with speech. In human evolution, the chin is a cladistic apomorphy, partially defining anatomically modern Humans as distinct from archaic forms") AnnotationAssertion(rdfs:label "chin") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray1195.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray1195.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -437556,7 +438131,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (forehead) AnnotationAssertion(rdfs:label "forehead") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/83/Forhead_01_ies.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/83/Forhead_01_ies.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -437571,7 +438146,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pelvic cavity) AnnotationAssertion(rdfs:label "pelvic cavity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -437636,7 +438211,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "periodontal ligament") AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -437738,7 +438313,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "deep artery of penis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray543.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray543.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -437774,7 +438349,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (vestibule of vagina) AnnotationAssertion(rdfs:label "vestibule of vagina") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f3/Scheidenvorhof.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f3/Scheidenvorhof.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -437804,7 +438379,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In humans is the sole of the foot anatomically referred to as the plantar aspect. The equivalent surface in ungulates is the hoof") AnnotationAssertion(rdfs:label "plantar part of pes") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/41/Soles2.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/41/Soles2.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -438002,7 +438577,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (intertarsal joint) AnnotationAssertion(rdfs:label "intertarsal joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray360.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray360.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(2 ))) SubClassOf( ) SubClassOf( ) @@ -438064,7 +438639,7 @@ AnnotationAssertion( ) AnnotationAssertion( "cremasteric") AnnotationAssertion(rdfs:label "cremaster muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/67/Gray1143.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/67/Gray1143.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438085,7 +438660,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "infrahyoid muscle") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/48/Infrahyoid_muscles.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/48/Infrahyoid_muscles.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438095,7 +438670,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "piriformis muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438107,7 +438682,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "suprahyoid muscle") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/697"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/58/Suprahyoid_muscles.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/58/Suprahyoid_muscles.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438116,7 +438691,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "posterior crico-arytenoid") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Musculuscricoarytenoideusposterior.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9d/Musculuscricoarytenoideusposterior.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -438127,7 +438702,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lateral crico-arytenoid") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/34/Musculuscricoarytenoideuslateralis.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/34/Musculuscricoarytenoideuslateralis.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -438137,7 +438712,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (levator veli palatini) AnnotationAssertion(rdfs:label "levator veli palatini") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a5/Musculuslevatorvelipalatini.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a5/Musculuslevatorvelipalatini.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438147,7 +438722,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (procerus) AnnotationAssertion(rdfs:label "procerus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Procerus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Procerus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438155,7 +438730,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "zygomaticus major muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Zygomaticus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Zygomaticus.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438171,7 +438746,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "zygomaticus minor muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Musculuszygomaticusminor.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/46/Musculuszygomaticusminor.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438194,7 +438769,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mentalis muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/37/Mentalis.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/37/Mentalis.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -438212,7 +438787,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "depressor anguli oris muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -438222,7 +438797,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "risorius muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Musculusrisorius.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Musculusrisorius.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438317,7 +438892,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dorsal venous arch") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Gray581.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4e/Gray581.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -438341,7 +438916,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (posterior cranial fossa) AnnotationAssertion(rdfs:label "posterior cranial fossa") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/c2/Posterior_fossa.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/c/c2/Posterior_fossa.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438413,7 +438988,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (gingival groove) AnnotationAssertion(rdfs:label "gingival groove") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5e/Gingival_sulcus.PNG"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5e/Gingival_sulcus.PNG"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438439,7 +439014,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (nasopalatine nerve) AnnotationAssertion(rdfs:label "nasopalatine nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438508,7 +439083,6 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "surfactant") AnnotationAssertion(rdfs:label "pulmonary surfactant") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -438546,7 +439120,7 @@ SubClassOf( ) AnnotationAssertion(rdfs:label "great auricular nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray805.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray805.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -438565,7 +439139,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "in mice, the hepatic diverticulum forms by E9 and expands into an obvious liver bud by E10") AnnotationAssertion( "The caudal part of the septum transversum is invaded by the hepatic diverticulum which divides within it to form the liver and thus gives rise to the ventral mesentery of the foregut.") AnnotationAssertion(rdfs:label "hepatic diverticulum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -438654,7 +439228,7 @@ DisjointClasses( "logical definition deliberately made strict to avoid classifying MA:spiral ligament as both nonskeletal and skeletal. see https://github.com/obophenotype/mouse-anatomy-ontology/issues/71") AnnotationAssertion(rdfs:label "skeletal ligament") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -438725,7 +439299,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pyloric canal) AnnotationAssertion(rdfs:label "pyloric canal") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -438755,7 +439329,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "check relationship to pylorus vs antrum") AnnotationAssertion(rdfs:label "pyloric gastric gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -438883,12 +439457,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (osteoid) AnnotationAssertion(rdfs:label "osteoid") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9c/Active_osteoblasts.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/9c/Active_osteoblasts.jpg"^^xsd:anyURI) SubClassOf( ) # Class: (left putamen) AnnotationAssertion(rdfs:label "left putamen") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438896,6 +439472,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (right putamen) AnnotationAssertion(rdfs:label "right putamen") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438913,7 +439491,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (rectal venous plexus) AnnotationAssertion(rdfs:label "rectal venous plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray587.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray587.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -438923,7 +439501,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "many sources define this as the part of the endoskeletal that is from pharyngeal arches - this would make it part-disjoint from dermatocranium. However, there are many bones in AOs that have part-paths to both") AnnotationAssertion(rdfs:label "splanchnocranium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -439152,6 +439730,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (upper lobe of left lung) AnnotationAssertion(rdfs:label "upper lobe of left lung") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -439162,6 +439744,10 @@ DisjointClasses( ObjectSomeValues # Class: (lower lobe of left lung) AnnotationAssertion(rdfs:label "lower lobe of left lung") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -439198,7 +439784,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "WP suggests a merge with cerebral white matter") AnnotationAssertion(rdfs:label "centrum semiovale") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/95/Gray752.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/95/Gray752.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -439238,7 +439824,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (submucosal esophageal gland) AnnotationAssertion(rdfs:label "submucosal esophageal gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -439395,7 +439981,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (prostatic venous plexus) AnnotationAssertion(rdfs:label "prostatic venous plexus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -439735,7 +440321,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "axillary") AnnotationAssertion(rdfs:label "axilla") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -440186,7 +440772,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lumbar nerve) AnnotationAssertion(rdfs:label "lumbar nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -440194,7 +440780,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sacral nerve) AnnotationAssertion(rdfs:label "sacral nerve") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -440254,7 +440840,7 @@ SubClassOf( (body of sphenoid) AnnotationAssertion(rdfs:label "body of sphenoid") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d5/Gray146.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d5/Gray146.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -440793,7 +441379,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anterior cingulate cortex) AnnotationAssertion(rdfs:label "anterior cingulate cortex") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -440825,7 +441411,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "acinar") AnnotationAssertion(rdfs:label "glandular acinus") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -440920,7 +441506,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "In humans, present in 100% of fetuses, but over 85% of them fuse by 3-6 months after birth") AnnotationAssertion(rdfs:label "cavum septum pellucidum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/CavumSeptumPellucidumDiagram.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7d/CavumSeptumPellucidumDiagram.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -440931,7 +441517,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "We follow Kardong in defining stomach regions by gland, but we also include 'body of stomach'. In future we may want to have different partitions of the stomach") AnnotationAssertion(rdfs:label "zone of stomach") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Regions_of_stomach.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/29/Regions_of_stomach.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -440983,7 +441569,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone") AnnotationAssertion(rdfs:label "carpal skeleton") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441003,7 +441589,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anal column) AnnotationAssertion(rdfs:label "anal column") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441023,7 +441609,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "interlobar artery") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441033,7 +441619,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "interlobar vein") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441081,7 +441667,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pole of cerebral hemisphere) AnnotationAssertion(rdfs:label "pole of cerebral hemisphere") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441108,7 +441694,7 @@ SubClassOf( "todo - add has_part relationships.") AnnotationAssertion(rdfs:label "renal lobe") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441294,7 +441880,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medial condyle of femur") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441322,7 +441908,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lateral condyle of tibia") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray257.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray257.png"^^xsd:anyURI) SubClassOf( ) # Class: (multicellular anatomical structure) @@ -441422,7 +442008,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (posterior part of tongue) AnnotationAssertion(rdfs:label "posterior part of tongue") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -441431,7 +442017,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "Consider FMA:14923 ! Principal gland of fundus of stomach. Added part_of to mucosa to be consistent with FMA pattern (note that Kardong places this in the glandular epithelium)") AnnotationAssertion(rdfs:label "fundic gastric gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Fundic_gland_polyp_%281%29.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Fundic_gland_polyp_%281%29.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -441455,7 +442041,7 @@ AnnotationAssertion( "todo - clarify if mucus glands are also excluded, in addition to gastric glands. See notes for rumen.") AnnotationAssertion( "this region may develop from the base of the esophagus (some herbivores) - in rodents, loss of the gastric glands in the mucosa leavea a nonglandular epithelial stomach in which smooth muscle contractions knead and mix digesta. This can be keratinized.") AnnotationAssertion(rdfs:label "stomach non-glandular epithelium") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Mammalian_Stomachs_remake.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b9/Mammalian_Stomachs_remake.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -441541,7 +442127,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pharyngeal opening of pharyngotympanic tube) AnnotationAssertion(rdfs:label "pharyngeal opening of pharyngotympanic tube") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray1029.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray1029.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -441819,7 +442405,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (paraurethral gland) AnnotationAssertion(rdfs:label "paraurethral gland") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -441827,7 +442413,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (paraurethral duct) AnnotationAssertion(rdfs:label "paraurethral duct") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -441880,7 +442466,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sphenofrontal suture) AnnotationAssertion(rdfs:label "sphenofrontal suture") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441889,7 +442475,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sphenoparietal suture) AnnotationAssertion(rdfs:label "sphenoparietal suture") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441898,7 +442484,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sphenozygomatic suture) AnnotationAssertion(rdfs:label "sphenozygomatic suture") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -441907,7 +442493,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (occipitomastoid suture) AnnotationAssertion(rdfs:label "occipitomastoid suture") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Occipitomastoideus.PNG"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/df/Occipitomastoideus.PNG"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -441939,7 +442525,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (eyebrow) AnnotationAssertion(rdfs:label "eyebrow") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/29/Eyes_chris.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/29/Eyes_chris.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -442195,6 +442781,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (left pupil) AnnotationAssertion(rdfs:label "left pupil") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -442202,6 +442792,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (right pupil) AnnotationAssertion(rdfs:label "right pupil") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -442261,7 +442855,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae") AnnotationAssertion(rdfs:label "palatopharyngeus muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Musculuspalatopharyngeus.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Musculuspalatopharyngeus.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -442276,7 +442870,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (uvular muscle) AnnotationAssertion(rdfs:label "uvular muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray169.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray169.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -442402,7 +442996,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (operculum of brain) AnnotationAssertion(rdfs:label "operculum of brain") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -442442,7 +443036,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "collect tears produced by the lacrimal glands") AnnotationAssertion(rdfs:label "lacrimal punctum") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray895.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray895.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -442795,7 +443389,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "currently classified as a zone of a bone organ, but exists prior to bone ossifying") AnnotationAssertion(rdfs:label "ossification center") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray79.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray79.png"^^xsd:anyURI) SubClassOf( ) # Class: (arch of centrum of vertebra) @@ -442953,7 +443547,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle)") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior tarsal muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -443077,6 +443671,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "afferent lymphatic vessel") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -443085,6 +443681,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "efferent lymphatic vessel") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^xsd:anyURI) SubClassOf( ) # Class: (spleen marginal sinus) @@ -443244,6 +443842,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lymph node T cell domain) AnnotationAssertion(rdfs:label "lymph node T cell domain") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -443336,7 +443936,15 @@ DisjointClasses( ObjectSomeValues # Class: (ciliary processes) AnnotationAssertion(rdfs:label "ciliary processes") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Eye_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_L.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Eye_R.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -443547,7 +444155,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (metacarpus skeleton) AnnotationAssertion(rdfs:label "metacarpus skeleton") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -443560,7 +444168,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (metatarsus skeleton) AnnotationAssertion(rdfs:label "metatarsus skeleton") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -444194,7 +444802,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (distal tarsal bone) AnnotationAssertion(rdfs:label "distal tarsal bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -444306,7 +444914,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (iliac blade) AnnotationAssertion(rdfs:label "iliac blade") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray235.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray235.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -444321,6 +444929,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lymph node follicle) AnnotationAssertion(rdfs:label "lymph node follicle") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -444362,7 +444972,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation.[GO]") AnnotationAssertion(rdfs:label "germinal center") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/60/Germinal_center.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/60/Germinal_center.svg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -444392,7 +445002,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (supraglenoid tubercle) AnnotationAssertion(rdfs:label "supraglenoid tubercle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -444524,6 +445134,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:label "skin of front of neck") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -444707,7 +445318,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "candidate for obsoletion. See https://github.com/obophenotype/uberon/issues/530") AnnotationAssertion(rdfs:label "crico-arytenoid muscle") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/530"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -444719,7 +445330,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "orbicularis oris muscle") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/473"^^xsd:anyURI) -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b6/Orbicularis_oris.jpg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/b6/Orbicularis_oris.jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -444777,7 +445388,7 @@ DisjointClasses( ObjectSomeValues AnnotationAssertion( ) AnnotationAssertion(rdfs:label "occipitofrontalis muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -444806,7 +445417,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (frontalis muscle belly) AnnotationAssertion(rdfs:label "frontalis muscle belly") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/be/Musculus_frontalis.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/be/Musculus_frontalis.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -444814,7 +445425,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nasalis muscle") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bb/Nasalis.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bb/Nasalis.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -444953,7 +445564,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brachioradialis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Brachioradialis.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/92/Brachioradialis.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -445093,7 +445704,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (humeroulnar joint) AnnotationAssertion(rdfs:label "humeroulnar joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -445105,7 +445716,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (humeroradial joint) AnnotationAssertion(rdfs:label "humeroradial joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -445126,8 +445737,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (tarsometatarsal joint) AnnotationAssertion(rdfs:label "tarsometatarsal joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray355.png"^^xsd:anyURI) -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray355.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -445138,7 +445749,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (carpometacarpal joint) AnnotationAssertion(rdfs:label "carpometacarpal joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray335.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray335.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -445157,7 +445768,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cricothyroid joint) AnnotationAssertion(rdfs:label "cricothyroid joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -445167,7 +445778,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cricoarytenoid joint) AnnotationAssertion(rdfs:label "cricoarytenoid joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray960.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray960.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -445192,7 +445803,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (intercarpal joint) AnnotationAssertion(rdfs:label "intercarpal joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/37/Gray336.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/37/Gray336.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(2 ))) SubClassOf( ) SubClassOf( ) @@ -445202,7 +445813,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (intermetatarsal joint) AnnotationAssertion(rdfs:label "intermetatarsal joint") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectExactCardinality(2 ))) SubClassOf( ) SubClassOf( ) @@ -445320,7 +445931,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (facial skeleton) AnnotationAssertion(rdfs:label "facial skeleton") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -445393,7 +446004,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (corpus spongiosum of penis) AnnotationAssertion(rdfs:label "corpus spongiosum of penis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -445431,14 +446042,16 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (ophthalmic vein) AnnotationAssertion(rdfs:label "ophthalmic vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) # Class: (superior ophthalmic vein) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior ophthalmic vein") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -445465,7 +446078,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sacrococcygeal symphysis) AnnotationAssertion(rdfs:label "sacrococcygeal symphysis") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray320.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray320.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -445590,7 +446203,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (scent gland) AnnotationAssertion(rdfs:label "scent gland") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/85/Civetglands.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/85/Civetglands.png"^^xsd:anyURI) SubClassOf( ) # Class: (rhinarium) @@ -445990,7 +446603,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904]") AnnotationAssertion(rdfs:label "cloacal bursa") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d8/Turtle_Cloacal_Respiration.png"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/d8/Turtle_Cloacal_Respiration.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -446380,7 +446993,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "The left nerve is longer than the right, because it crosses under the arch of the aorta at the ligamentum arteriosum.[WP]") AnnotationAssertion(rdfs:label "left recurrent laryngeal nerve") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/64/Recurrent_laryngeal_nerve.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/64/Recurrent_laryngeal_nerve.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -447107,7 +447720,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (talofibular ligament) AnnotationAssertion(rdfs:label "talofibular ligament") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -447118,7 +447731,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (calcaneofibular ligament) AnnotationAssertion(rdfs:label "calcaneofibular ligament") -AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -447248,6 +447861,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lobar bronchus of left lung upper lobe) AnnotationAssertion(rdfs:label "lobar bronchus of left lung upper lobe") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -447255,6 +447872,10 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lobar bronchus of left lung lower lobe) AnnotationAssertion(rdfs:label "lobar bronchus of left lung lower lobe") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -447897,7 +448518,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (male membranous urethra) AnnotationAssertion(rdfs:label "male membranous urethra") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -448037,7 +448658,7 @@ SubClassOf( "See https://github.com/obophenotype/uberon/issues/1305") AnnotationAssertion(rdfs:label "autopod pad") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Paw_and_pads.jpg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8d/Paw_and_pads.jpg"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -448960,7 +449581,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "epipubic") AnnotationAssertion(rdfs:label "epipubic bone") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Macropus_major_hind_legs.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Macropus_major_hind_legs.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -449101,7 +449722,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cranial cavity) AnnotationAssertion(rdfs:label "cranial cavity") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -449110,7 +449731,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (anatomical point connecting sagittal and lambdoidal sutures) AnnotationAssertion(rdfs:label "anatomical point connecting sagittal and lambdoidal sutures") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray1193.svg"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray1193.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -449120,7 +449741,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (spheno-petrosal fissure) AnnotationAssertion(rdfs:label "spheno-petrosal fissure") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -449400,7 +450021,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (Brodmann (1909) area 28) AnnotationAssertion(rdfs:label "Brodmann (1909) area 28") -AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Brodmann_Cytoarchitectonics_28.png"^^xsd:anyURI) +AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Brodmann_Cytoarchitectonics_28.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -449970,6 +450591,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (external cervical os) AnnotationAssertion(rdfs:label "external cervical os") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -450044,6 +450666,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "left nipple") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -450054,6 +450677,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:label "right nipple") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -451481,7 +452105,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(rdfs:comment "VRS belonging to the subarachnoid space are continuous with VRS of the subpial space. The direct communication between VRS of the subarachnoid space and the subpial space is unique to the brain's arteries, as no leptomeningeal layers surround the brain's veins[WP]") AnnotationAssertion(rdfs:label "perivascular space") -AnnotationAssertion( "https://static-content.springer.com/image/art%3A10.1007%2Fs11064-015-1581-6/MediaObjects/11064_2015_1581_Fig3_HTML.gif"^^xsd:anyURI) +AnnotationAssertion( "https://static-content.springer.com/image/art%3A10.1007%2Fs11064-015-1581-6/MediaObjects/11064_2015_1581_Fig3_HTML.gif"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -453336,6 +453960,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "It consists of type III collagen and extends to the stroma of endothelial sinusoids. It is covered by a single layer of mesothelial cells.") AnnotationAssertion(rdfs:label "capsule of liver") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -454483,6 +455109,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( ) AnnotationAssertion( "In humans, they begin in the deep veins of the penis which issue from the corpus cavernosum penis, accompany the internal pudendal artery, and unite to form a single vessel, which ends in the internal iliac vein. They receive the veins from the urethral bulb, and the perineal and inferior hemorrhoidal veins") AnnotationAssertion(rdfs:label "internal pudendal vein") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -455751,7 +456379,6 @@ AnnotationAssertion( "serous in horse [ISBN:1118473523]") AnnotationAssertion(rdfs:label "secretion of nictitans gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -456614,7 +457241,7 @@ AnnotationAssertion( "auricular feather") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf(Annotation(rdfs:comment "EDITOR_NOTE request more specific terms from PATO") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (perforant path) @@ -457475,6 +458102,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (colic artery) AnnotationAssertion(rdfs:label "colic artery") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -458565,6 +459193,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cystic artery) AnnotationAssertion(rdfs:label "cystic artery") +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^xsd:anyURI) +AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -460710,6 +461340,13 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (chorionic plate blood vessel) + +AnnotationAssertion(rdfs:label "chorionic plate blood vessel") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (cyanidin 35-diglucoside (66-malyl diester)) AnnotationAssertion(rdfs:label "cyanidin 35-diglucoside (66-malyl diester)") @@ -461569,6 +462206,7 @@ SubClassOf(ObjectIntersectionOf( SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) diff --git a/src/patterns/data/default/entity_attribute.tsv b/src/patterns/data/default/entity_attribute.tsv index fe623e5b..38e06ce1 100644 --- a/src/patterns/data/default/entity_attribute.tsv +++ b/src/patterns/data/default/entity_attribute.tsv @@ -4302,7 +4302,7 @@ OBA:2045253 ventral diencephalon volume UBERON:0001894 diencephalon PATO:0000918 OBA:2045254 carotid artery circumferential wall stress UBERON:0005396 carotid artery segment PATO:0001034 strain https://orcid.org/0000-0001-8314-2140 OBA:2045255 pulmonary artery strain UBERON:0002012 pulmonary artery PATO:0001034 strain https://orcid.org/0000-0001-8314-2140 OBA:2045256 multiple keratinocyte carcinoma susceptibility CL:0000312 keratinocyte PATO:0001043 susceptibility toward https://orcid.org/0000-0001-8314-2140 -OBA:2045259 urine relative density UBERON:0001088 urine PATO:0001159 concentrated https://orcid.org/0000-0001-8314-2140 +OBA:2045259 urine relative density UBERON:0001088 urine PATO:0000033 concentration of https://orcid.org/0000-0001-8314-2140 OBA:2045260 red blood cell density CL:0000232 erythrocyte PATO:0001164 dense https://orcid.org/0000-0001-8314-2140 OBA:2045261 quality of life UBERON:0000104 life cycle PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140 OBA:2045262 hearing process quality GO:0007605 sensory perception of sound PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140 @@ -4347,3 +4347,39 @@ OBA:2045390 basophil ratio CL:0000767 basophil PATO:0001470 proportionality to OBA:2045391 eosinophil ratio CL:0000771 eosinophil PATO:0001470 proportionality to https://orcid.org/0000-0001-8314-2140 OBA:2045392 basophil to leukocyte ratio CL:0000767 basophil OBA:2045389 leukocyte ratio https://orcid.org/0000-0001-8314-2140 OBA:2045393 eosinophil to leukocyte ratio CL:0000771 eosinophil OBA:2045389 leukocyte ratio https://orcid.org/0000-0001-8314-2140 +OBA:2045406 CL:0002535 epithelial cell of cervix PATO:0000051 morphology https://orcid.org/0000-0001-8314-2140 +OBA:2045407 response to bacterium process attribute GO:0009617 response to bacterium PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140 +OBA:2045408 amniotic fluid pH UBERON:0000173 amniotic fluid PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045409 blood pH UBERON:0000178 blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045410 UBERON:0000468 multicellular organism PATO:0000011 age https://orcid.org/0000-0001-8314-2140 +OBA:2045411 UBERON:0000479 tissue PATO:0000125 mass https://orcid.org/0000-0001-8314-2140 +OBA:2045412 UBERON:0001062 anatomical entity PATO:0000051 morphology https://orcid.org/0000-0001-8314-2140 +OBA:2045413 UBERON:0001062 anatomical entity PATO:0000125 mass https://orcid.org/0000-0001-8314-2140 +OBA:2045414 UBERON:0001088 urine PATO:0000957 opacity https://orcid.org/0000-0001-8314-2140 +OBA:2045415 UBERON:0001088 urine PATO:0002027 osmolality https://orcid.org/0000-0001-8314-2140 +OBA:2045416 synovial fluid attribute UBERON:0001090 synovial fluid PATO:0000001 quality https://orcid.org/0000-0001-8314-2140 +OBA:2045417 UBERON:0001090 synovial fluid PATO:0000992 viscosity https://orcid.org/0000-0001-8314-2140 +OBA:2045418 appearance of cerebrospinal fluid UBERON:0001359 cerebrospinal fluid PATO:0001300 optical quality https://orcid.org/0000-0001-8314-2140 +OBA:2045419 UBERON:0001359 cerebrospinal fluid PATO:0000014 color https://orcid.org/0000-0001-8314-2140 +OBA:2045420 UBERON:0001417 skin of neck PATO:0000915 thickness https://orcid.org/0000-0001-8314-2140 +OBA:2045421 semen attribute UBERON:0001968 semen PATO:0000001 quality https://orcid.org/0000-0001-8314-2140 +OBA:2045422 UBERON:0001968 semen PATO:0000918 volume https://orcid.org/0000-0001-8314-2140 +OBA:2045423 UBERON:0001968 semen PATO:0000992 viscosity https://orcid.org/0000-0001-8314-2140 +OBA:2045424 semen pH UBERON:0001968 semen PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045425 plasma pH UBERON:0001969 blood plasma PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045426 UBERON:0001969 blood plasma PATO:0002027 osmolality https://orcid.org/0000-0001-8314-2140 +OBA:2045427 UBERON:0001977 blood serum PATO:0000992 viscosity https://orcid.org/0000-0001-8314-2140 +OBA:2045428 UBERON:0001988 feces PATO:0000037 consistency firmness of faeces https://orcid.org/0000-0001-8314-2140 +OBA:2045429 UBERON:0001988 feces PATO:0000125 mass faeces mass https://orcid.org/0000-0001-8314-2140 +OBA:2045430 feces pH UBERON:0001988 feces PATO:0001842 acidity pH of faeces https://orcid.org/0000-0001-8314-2140 +OBA:2045431 body fluid attribute UBERON:0006314 bodily fluid PATO:0000001 quality https://orcid.org/0000-0001-8314-2140 +OBA:2045432 body fluid color UBERON:0006314 bodily fluid PATO:0000014 color https://orcid.org/0000-0001-8314-2140 +OBA:2045433 body fluid pH UBERON:0006314 bodily fluid PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045434 umbilical cord blood pH UBERON:0012168 umbilical cord blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045435 stomach content pH UBERON:0013525 stomach lumen PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045436 arterial blood pH UBERON:0013755 arterial blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045437 venous blood pH UBERON:0013756 venous blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045438 capillary blood pH UBERON:0013757 capillary blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140 +OBA:2045439 body surface area UBERON:0035159 entire surface of organism PATO:0001323 area https://orcid.org/0000-0001-8314-2140 +OBA:2045451 attribute of response to allergen in serum UBERON:0001977 blood serum OBA:2045453 attribute of response to allergen https://orcid.org/0000-0001-8314-2140 +OBA:2045452 attribute of response to thyroid hormone in plasma UBERON:0001969 blood plasma OBA:2045454 attribute of response to thyroid hormone https://orcid.org/0000-0001-8314-2140 diff --git a/src/patterns/data/default/entity_attribute_location.tsv b/src/patterns/data/default/entity_attribute_location.tsv index 0ff78d65..40b97e5f 100644 --- a/src/patterns/data/default/entity_attribute_location.tsv +++ b/src/patterns/data/default/entity_attribute_location.tsv @@ -5441,3 +5441,14 @@ OBA:2045401 level of aspartate aminotransferase, mitochondrial type PR:000008154 OBA:2045402 creatinine level CHEBI:16737 creatinine PATO:0000070 amount UBERON:0001062 anatomical entity https://orcid.org/0000-0001-8314-2140 OBA:2045403 urobilinogen level CHEBI:29026 urobilinogen PATO:0000070 amount UBERON:0001062 anatomical entity https://orcid.org/0000-0001-8314-2140 OBA:2045404 nitrite level CHEBI:16301 nitrite PATO:0000070 amount UBERON:0001062 anatomical entity https://orcid.org/0000-0001-8314-2140 +OBA:2045405 CHEBI:60579 calcium oxalate PATO:0000070 amount UBERON:0001088 urine https://orcid.org/0000-0001-8314-2140 +OBA:2045440 hepatic iron amount CHEBI:18248 iron atom PATO:0000070 amount UBERON:0002107 liver liver iron amount https://orcid.org/0000-0001-8314-2140 +OBA:2045442 arterial blood oxygen level CHEBI:25805 oxygen atom PATO:0000070 amount UBERON:0013755 arterial blood https://orcid.org/0000-0001-8314-2140 +OBA:2045443 oxygen concentration in blood CHEBI:25805 oxygen atom PATO:0000033 concentration of UBERON:0000178 blood https://orcid.org/0000-0001-8314-2140 +OBA:2045444 oxygen concentration in umbilical cord blood CHEBI:25805 oxygen atom PATO:0000033 concentration of UBERON:0012168 umbilical cord blood https://orcid.org/0000-0001-8314-2140 +OBA:2045445 oxygen concentration in arterial blood CHEBI:25805 oxygen atom PATO:0000033 concentration of UBERON:0013755 arterial blood https://orcid.org/0000-0001-8314-2140 +OBA:2045446 oxygen concentration in venous blood CHEBI:25805 oxygen atom PATO:0000033 concentration of UBERON:0013756 venous blood https://orcid.org/0000-0001-8314-2140 +OBA:2045447 oxygen concentration in capillary blood CHEBI:25805 oxygen atom PATO:0000033 concentration of UBERON:0013757 capillary blood https://orcid.org/0000-0001-8314-2140 +OBA:2045448 attribute of response to heparin in plasma CHEBI:28304 heparin PATO:0000077 response to UBERON:0001969 blood plasma https://orcid.org/0000-0001-8314-2140 +OBA:2045449 plasma thyroxine level CHEBI:30660 thyroxine PATO:0000070 amount UBERON:0001969 blood plasma https://orcid.org/0000-0001-8314-2140 +OBA:2045450 blood hemoglobin attribute CHEBI:35143 hemoglobin PATO:0000001 quality UBERON:0000178 blood blood haemoglobin attribute https://orcid.org/0000-0001-8314-2140 diff --git a/src/patterns/data/default/response_to_chemical_with_role_stimulus.tsv b/src/patterns/data/default/response_to_chemical_with_role_stimulus.tsv index ba8dafc7..f39bf6b2 100644 --- a/src/patterns/data/default/response_to_chemical_with_role_stimulus.tsv +++ b/src/patterns/data/default/response_to_chemical_with_role_stimulus.tsv @@ -33,3 +33,5 @@ OBA:2040111 CHEBI:68481 mTOR inhibitor https://orcid.org/0000-0001-8314-2140|ht OBA:2040113 CHEBI:70727 topoisomerase inhibitor https://orcid.org/0000-0001-8314-2140|https://orcid.org/0000-0002-7073-9172 OBA:2045297 CHEBI:50646 bone density conservation agent https://orcid.org/0000-0001-8314-2140 OBA:2050352 CHEBI:35526 hypoglycemic agent https://orcid.org/0000-0001-6757-4744 +OBA:2045453 attribute of response to allergen CHEBI:50904 allergen https://orcid.org/0000-0001-8314-2140 +OBA:2045454 attribute of response to thyroid hormone CHEBI:60311 thyroid hormone https://orcid.org/0000-0001-8314-2140 diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index 31f5d50d..1fc42d4c 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-11-13"^^xsd:string) + +Annotation(owl:versionInfo "2023-12-05"^^xsd:string) Declaration(Class()) Declaration(Class()) @@ -312,6 +312,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -325,6 +326,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -716,6 +718,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1029,6 +1032,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12120,6 +12124,55 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -14861,6 +14914,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -14868,6 +14922,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -14928,10 +14983,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -20290,6 +20345,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -20423,6 +20479,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -20744,6 +20801,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -22288,6 +22346,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -22330,6 +22389,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -22478,6 +22538,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -100473,11 +100534,11 @@ EquivalentClasses( ObjectIntersectio # Class: (urine relative density) -AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The concentrated of a urine."^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The concentration of of a urine."^^xsd:string) AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) -AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "concentrated of urine"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "concentration of of urine"^^xsd:string) AnnotationAssertion(rdfs:label "urine relative density"^^xsd:string) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (red blood cell density) @@ -101590,6 +101651,403 @@ AnnotationAssertion(Annotation( "nitrite level"^^xsd:string) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) +# Class: (amount of calcium oxalate in urine) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The amount of a calcium oxalate when measured in urine."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "urine calcium oxalate amount"^^xsd:string) +AnnotationAssertion(rdfs:label "amount of calcium oxalate in urine"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (epithelial cell of cervix morphology) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The morphology of a epithelial cell of cervix."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "morphology of epithelial cell of cervix"^^xsd:string) +AnnotationAssertion(rdfs:label "epithelial cell of cervix morphology"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (response to bacterium process attribute) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The process quality of a response to bacterium."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "process quality of response to bacterium"^^xsd:string) +AnnotationAssertion(rdfs:label "response to bacterium process attribute"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (amniotic fluid pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a amniotic fluid."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of amniotic fluid"^^xsd:string) +AnnotationAssertion(rdfs:label "amniotic fluid pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (blood pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of blood"^^xsd:string) +AnnotationAssertion(rdfs:label "blood pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (multicellular organism age) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The age of a multicellular organism."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "age of multicellular organism"^^xsd:string) +AnnotationAssertion(rdfs:label "multicellular organism age"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (tissue mass) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The mass of a tissue."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "mass of tissue"^^xsd:string) +AnnotationAssertion(rdfs:label "tissue mass"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (anatomical entity morphology) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The morphology of a anatomical entity."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "morphology of anatomical entity"^^xsd:string) +AnnotationAssertion(rdfs:label "anatomical entity morphology"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (anatomical entity mass) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The mass of a anatomical entity."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "mass of anatomical entity"^^xsd:string) +AnnotationAssertion(rdfs:label "anatomical entity mass"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (urine opacity) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The opacity of a urine."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "opacity of urine"^^xsd:string) +AnnotationAssertion(rdfs:label "urine opacity"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (urine osmolality) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The osmolality of a urine."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "osmolality of urine"^^xsd:string) +AnnotationAssertion(rdfs:label "urine osmolality"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (synovial fluid attribute) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The quality of a synovial fluid."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "quality of synovial fluid"^^xsd:string) +AnnotationAssertion(rdfs:label "synovial fluid attribute"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (synovial fluid viscosity) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The viscosity of a synovial fluid."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "viscosity of synovial fluid"^^xsd:string) +AnnotationAssertion(rdfs:label "synovial fluid viscosity"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (appearance of cerebrospinal fluid) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The optical quality of a cerebrospinal fluid."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "optical quality of cerebrospinal fluid"^^xsd:string) +AnnotationAssertion(rdfs:label "appearance of cerebrospinal fluid"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (cerebrospinal fluid color) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The color of a cerebrospinal fluid."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "color of cerebrospinal fluid"^^xsd:string) +AnnotationAssertion(rdfs:label "cerebrospinal fluid color"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (skin of neck thickness) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The thickness of a skin of neck."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "thickness of skin of neck"^^xsd:string) +AnnotationAssertion(rdfs:label "skin of neck thickness"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (semen attribute) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The quality of a semen."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "quality of semen"^^xsd:string) +AnnotationAssertion(rdfs:label "semen attribute"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (semen volume) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The volume of a semen."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "volume of semen"^^xsd:string) +AnnotationAssertion(rdfs:label "semen volume"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (semen viscosity) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The viscosity of a semen."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "viscosity of semen"^^xsd:string) +AnnotationAssertion(rdfs:label "semen viscosity"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (semen pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a semen."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of semen"^^xsd:string) +AnnotationAssertion(rdfs:label "semen pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (plasma pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a blood plasma."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of blood plasma"^^xsd:string) +AnnotationAssertion(rdfs:label "plasma pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (blood plasma osmolality) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The osmolality of a blood plasma."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "osmolality of blood plasma"^^xsd:string) +AnnotationAssertion(rdfs:label "blood plasma osmolality"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (blood serum viscosity) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The viscosity of a blood serum."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "viscosity of blood serum"^^xsd:string) +AnnotationAssertion(rdfs:label "blood serum viscosity"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (feces consistency) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The consistency of a feces."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "consistency of feces"^^xsd:string) +AnnotationAssertion( "firmness of faeces"^^xsd:string) +AnnotationAssertion(rdfs:label "feces consistency"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (feces mass) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The mass of a feces."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion( "faeces mass"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "mass of feces"^^xsd:string) +AnnotationAssertion(rdfs:label "feces mass"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (feces pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a feces."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of feces"^^xsd:string) +AnnotationAssertion( "pH of faeces"^^xsd:string) +AnnotationAssertion(rdfs:label "feces pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (body fluid attribute) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The quality of a bodily fluid."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "quality of bodily fluid"^^xsd:string) +AnnotationAssertion(rdfs:label "body fluid attribute"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (body fluid color) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The color of a bodily fluid."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "color of bodily fluid"^^xsd:string) +AnnotationAssertion(rdfs:label "body fluid color"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (body fluid pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a bodily fluid."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of bodily fluid"^^xsd:string) +AnnotationAssertion(rdfs:label "body fluid pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (umbilical cord blood pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a umbilical cord blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of umbilical cord blood"^^xsd:string) +AnnotationAssertion(rdfs:label "umbilical cord blood pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (stomach content pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a stomach lumen."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of stomach lumen"^^xsd:string) +AnnotationAssertion(rdfs:label "stomach content pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (arterial blood pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a arterial blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of arterial blood"^^xsd:string) +AnnotationAssertion(rdfs:label "arterial blood pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (venous blood pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a venous blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of venous blood"^^xsd:string) +AnnotationAssertion(rdfs:label "venous blood pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (capillary blood pH) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The acidity of a capillary blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "acidity of capillary blood"^^xsd:string) +AnnotationAssertion(rdfs:label "capillary blood pH"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (body surface area) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The area of a entire surface of organism."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "area of entire surface of organism"^^xsd:string) +AnnotationAssertion(rdfs:label "body surface area"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (hepatic iron amount) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The amount of a iron atom when measured in liver."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion( "liver iron amount"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "liver iron atom amount"^^xsd:string) +AnnotationAssertion(rdfs:label "hepatic iron amount"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (arterial blood oxygen level) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The amount of a oxygen atom when measured in arterial blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "arterial blood oxygen atom amount"^^xsd:string) +AnnotationAssertion(rdfs:label "arterial blood oxygen level"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (oxygen concentration in blood) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The concentration of of a oxygen atom when measured in blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "blood oxygen atom concentration of"^^xsd:string) +AnnotationAssertion(rdfs:label "oxygen concentration in blood"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (oxygen concentration in umbilical cord blood) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The concentration of of a oxygen atom when measured in umbilical cord blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "umbilical cord blood oxygen atom concentration of"^^xsd:string) +AnnotationAssertion(rdfs:label "oxygen concentration in umbilical cord blood"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (oxygen concentration in arterial blood) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The concentration of of a oxygen atom when measured in arterial blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "arterial blood oxygen atom concentration of"^^xsd:string) +AnnotationAssertion(rdfs:label "oxygen concentration in arterial blood"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (oxygen concentration in venous blood) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The concentration of of a oxygen atom when measured in venous blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "venous blood oxygen atom concentration of"^^xsd:string) +AnnotationAssertion(rdfs:label "oxygen concentration in venous blood"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (oxygen concentration in capillary blood) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The concentration of of a oxygen atom when measured in capillary blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "capillary blood oxygen atom concentration of"^^xsd:string) +AnnotationAssertion(rdfs:label "oxygen concentration in capillary blood"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (attribute of response to heparin in plasma) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The response to of a heparin when measured in blood plasma."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "blood plasma heparin response to"^^xsd:string) +AnnotationAssertion(rdfs:label "attribute of response to heparin in plasma"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (plasma thyroxine level) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The amount of a thyroxine when measured in blood plasma."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "blood plasma thyroxine amount"^^xsd:string) +AnnotationAssertion(rdfs:label "plasma thyroxine level"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (blood hemoglobin attribute) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "The quality of a hemoglobin when measured in blood."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion( "blood haemoglobin attribute"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) "blood hemoglobin quality"^^xsd:string) +AnnotationAssertion(rdfs:label "blood hemoglobin attribute"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (attribute of response to allergen in serum) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The attribute of response to allergen of a blood serum."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "attribute of response to allergen of blood serum"^^xsd:string) +AnnotationAssertion(rdfs:label "attribute of response to allergen in serum"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (attribute of response to thyroid hormone in plasma) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The attribute of response to thyroid hormone of a blood plasma."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "attribute of response to thyroid hormone of blood plasma"^^xsd:string) +AnnotationAssertion(rdfs:label "attribute of response to thyroid hormone in plasma"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (attribute of response to allergen) + +AnnotationAssertion( "A trait that affects the response to a stimulus with allergen."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion( "response to allergen trait"^^xsd:string) +AnnotationAssertion(rdfs:label "attribute of response to allergen"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))))) + +# Class: (attribute of response to thyroid hormone) + +AnnotationAssertion( "A trait that affects the response to a stimulus with thyroid hormone."^^xsd:string) +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140"^^xsd:string) +AnnotationAssertion( "response to thyroid hormone trait"^^xsd:string) +AnnotationAssertion(rdfs:label "attribute of response to thyroid hormone"^^xsd:string) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))))) + # Class: (ascending aorta diameter) AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute"^^xsd:string) "The diameter of a ascending aorta."^^xsd:string) @@ -120829,6 +121287,8 @@ SubClassOf(ObjectIntersectionOf( Obj SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -120837,9 +121297,12 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -120847,6 +121310,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -120861,6 +121325,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -120873,6 +121338,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -120967,6 +121433,8 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -120982,7 +121450,9 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -123124,6 +123594,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -123138,6 +123609,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -123166,6 +123638,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -123779,6 +124252,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -123840,6 +124314,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -123963,6 +124438,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -124000,6 +124476,9 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -124051,7 +124530,6 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) -SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -124088,6 +124566,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -124095,6 +124574,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -124113,6 +124593,7 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -124699,8 +125180,19 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -124865,6 +125357,8 @@ SubClassOf(ObjectIntersectionOf( Ob SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))