problem with making taxonomy file?

[camillaln]

Hi,
I had to reinstall fama on a new server and I used the same 'recipe' that you sent me last year. However, I get an error:
Writing /gpfs/fs3c/aafc/aafc_shp/can0002/deep-metagenomes/fama/Gorzelak/nitrogen_v10/S00JY_0887_efpkg_functions.xlsx
Writing /gpfs/fs3c/aafc/aafc_shp/can0002/deep-metagenomes/fama/Gorzelak/nitrogen_v10/S00JY_0887_efpkg_functions_taxonomy.xlsx
Traceback (most recent call last):
File "/gpfs/fs3c/aafc/aafc_shp/can0002/fama/py/fama.py", line 58, in
main()
File "/gpfs/fs3c/aafc/aafc_shp/can0002/fama/py/fama.py", line 48, in main
fastq_pe_pipeline(
File "/gpfs/fs3c/aafc/aafc_shp/can0002/fama/py/lib/pe_functional_pipeline.py", line 269, in fastq_pe_pipeline
generate_sample_report(project, sample_id)
File "/gpfs/fs3c/aafc/aafc_shp/can0002/fama/py/lib/output/report.py", line 1089, in generate_sample_report
make_func_tax_sample_xlsx(
File "/gpfs/fs3c/aafc/aafc_shp/can0002/fama/py/lib/output/xlsx_util.py", line 205, in make_func_tax_sample_xlsx
writer.save()
AttributeError: 'XlsxWriter' object has no attribute 'save'

Do you have any suggestions as to what is going wrong?
Thanks
Camilla

[aekazakov]

This repository is no longer maintained. Please update the origin and pull the latest version:

git remote set-url origin https://github.com/aekazakov/fama
git pull