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Server Setup

For Ubuntu-18.04 server

GENERAL

apt update
apt install sudo vim tmux -y

RCLONE

curl https://rclone.org/install.sh | sudo bash

DOCKER

sudo apt-get remove docker docker-engine docker.io
sudo apt install docker.io -y
sudo systemctl start docker
sudo systemctl enable docker
sudo usermod -aG docker ${USER}
su - ${USER}

# for confirmation
#id -nG
# docker run hellow-world

CONDA

wget https://repo.anaconda.com/miniconda/Miniconda3-py37_4.8.3-Linux-x86_64.sh

bash ./Miniconda3-py37_4.8.3-Linux-x86_64.sh
rm ./Miniconda3-py37_4.8.3-Linux-x86_64.sh

exec $SHELL


conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge



conda create --name py37 python=3.7 -y
conda create --name py27 python=2.7 -y

NEXTFLOW

# installs java-11 by default
conda install nextflow openjdk=11.0.1 -y