Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Scatter ci #122

Closed
wants to merge 4 commits into from
Closed

Scatter ci #122

wants to merge 4 commits into from

Conversation

edmundmiller
Copy link
Collaborator

No description provided.

@edmundmiller edmundmiller self-assigned this Oct 5, 2023
@edmundmiller edmundmiller changed the base branch from master to dev October 5, 2023 02:02
@github-actions
Copy link

github-actions bot commented Oct 5, 2023 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 7532677

+| ✅ 156 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 2.1.1
  • pipeline_todos - TODO string in README.md: Add full-sized test dataset and amend the paragraph below if applicable
  • pipeline_todos - TODO string in README.md: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.
  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file
  • pipeline_todos - TODO string in test_full.config: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA)
  • pipeline_todos - TODO string in test_full.config: Give any required params for the test so that command line flags are not needed
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in WorkflowNascent.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: LICENSE or LICENSE.md or LICENCE or LICENCE.md
  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File ignored due to lint config: assets/email_template.html

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-05 04:05:11

@nf-core nf-core deleted a comment from github-actions bot Oct 5, 2023
@edmundmiller edmundmiller force-pushed the scatter-ci branch 2 times, most recently from a101a30 to d48abaf Compare October 5, 2023 02:33
@edmundmiller
Copy link
Collaborator Author

Closing https://github.com/askimed/nf-test/releases/tag/v0.9.0 implemented this natively.

@edmundmiller edmundmiller deleted the scatter-ci branch August 1, 2024 18:18
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees

@edmundmiller edmundmiller

Labels
None yet
Projects
Hackathon: November 2023
Status: In progress
nf-test Migration
Status: Done
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@edmundmiller