Error when running 2.7.0 and 2.7.1

[dcarrillox]

Description of the bug

Hi,

I tried to run both 2.7.0 and 2.7.1 versions with my own data but without much success. When running the tests, they throw the same error (below). Tests for the 2.6.0 ran smoothly. Any idea?

Thanks,
Daniel

Command used and terminal output

$ nextflow run nf-core/methylseq -r 2.7.0 -profile test,singularity --outdir results
Nextflow 24.10.2 is available - Please consider updating your version to it

 N E X T F L O W   ~  version 24.10.0

Launching `https://github.com/nf-core/methylseq` [ecstatic_archimedes] DSL2 - revision: aac172df2c [2.7.0]

ERROR ~ Class definition not found: nextflow/validation/HelpConfig

 -- Check script '.nextflow/assets/nf-core/methylseq/./workflows/methylseq/main.nf' at line: 14 or see '.nextflow.log' file for more details

[sateeshperi]

hi what is the java version you are using ?

[sateeshperi]

any info that you can provide that will help me reproduce this issue would be appreciated

[dcarrillox]

Hi, java version is 17.0.8.1. I attach the .nextflow.log as well. nextflow.log

[sateeshperi]

could you update your nextflow version to 24.0.2 and try once plz

[sateeshperi]

also the error line nextflow/validation/HelpConfig points to a possible use of nf-validation which has since been depreciated in favor of nf-schema which is available in 2.7.1.

Maybe it has been cached and its trying to use that. Could you remove any previous .nextflow folder and also try again if you see the same error

[sateeshperi]

hi @dcarrillox any update on above ?