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[REVIEW]: Analysis code for the paper "RF shimming in the cervical spinal cord at 7T" #25
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Hello humans, I'm @roboneuro, a robot that can help you with some common editorial tasks. For a list of things I can do to help you, just type:
For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:
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Wordcount for |
@roboneuro build book |
🔴 Binder build has failed 🥀Status: Failed ℹ️ See details
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🥀 We ran into a problem building your book. Please see the log files below. BinderHub build log
If the BinderHub build looks OK, please see the Jupyter Book build log(s) below. I could not find any book log for shimming-toolbox/rf-shimming-7t at 3116b16edcc00fcb465831d8d8a51f98805d6374 🐞 After inspecting the logs above, you can interactively debug your notebooks on our BinderHub server. For guidelines, please see the relevant documentation. |
@mathieuboudreau this error is due to built image size, nothing on your end. I am working on it. Update: OK, now the registry is behind nginx with a generous upload limit, let's see! |
@roboneuro build book |
🔴 Binder build has failed 🥀Status: Failed ℹ️ See details
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🥀 We ran into a problem building your book. Please see the log files below. BinderHub build log
If the BinderHub build looks OK, please see the Jupyter Book build log(s) below. I could not find any book log for shimming-toolbox/rf-shimming-7t at 3116b16edcc00fcb465831d8d8a51f98805d6374 🐞 After inspecting the logs above, you can interactively debug your notebooks on our BinderHub server. For guidelines, please see the relevant documentation. |
@roboneuro build book |
🔴 Binder build has failed 🥀Status: Failed ℹ️ See details
|
🥀 We ran into a problem building your book. Please see the log files below. BinderHub build log
If the BinderHub build looks OK, please see the Jupyter Book build log(s) below. I could not find any book log for shimming-toolbox/rf-shimming-7t at 3116b16edcc00fcb465831d8d8a51f98805d6374 🐞 After inspecting the logs above, you can interactively debug your notebooks on our BinderHub server. For guidelines, please see the relevant documentation. |
@roboneuro build book |
🔴 Binder build has failed 🥀Status: Failed ℹ️ See details
|
🥀 We ran into a problem building your book. Please see the log files below. BinderHub build log
If the BinderHub build looks OK, please see the Jupyter Book build log(s) below. I could not find any book log for shimming-toolbox/rf-shimming-7t at 3116b16edcc00fcb465831d8d8a51f98805d6374 🐞 After inspecting the logs above, you can interactively debug your notebooks on our BinderHub server. For guidelines, please see the relevant documentation. |
@roboneuro build book |
🔴 Binder build has failed 🥀Status: Failed ℹ️ See details
|
🥀 We ran into a problem building your book. Please see the log files below. BinderHub build log
If the BinderHub build looks OK, please see the Jupyter Book build log(s) below. I could not find any book log for shimming-toolbox/rf-shimming-7t at 47f08c4a054636c29aacb31a1bd1d33972874b82 🐞 After inspecting the logs above, you can interactively debug your notebooks on our BinderHub server. For guidelines, please see the relevant documentation. |
@roboneuro set 10.5281/zenodo.10844542 as data archive |
@roboneuro set 10.5281/zenodo.10844544 as docker archive |
@roboneuro set 10.5281/zenodo.10844538 as book archive |
Done, book archive is now 10.5281/zenodo.10844538 |
@roboneuro set 10.5281/zenodo.10844540 as repository archive |
Done, repository archive is now 10.5281/zenodo.10844540 |
@roboneuro set 10.5281/zenodo.10844542 as data archive |
Done, data archive is now 10.5281/zenodo.10844542 |
@roboneuro set 10.5281/zenodo.10844544 as docker archive |
Done, docker archive is now 10.5281/zenodo.10844544 |
@roboneuro recommend-accept |
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👋 @neurolibre/executable-eics, this paper is ready to be accepted and published. Check final proof 👉📄 Download article If the paper PDF and the deposit XML files look good in neurolibre/preprints#78, then you can now move forward with accepting the submission by compiling again with the command |
@roboneuro commands |
Hello @agahkarakuzu, here are the things you can ask me to do:
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@roboneuro production sync pdf |
🌱♻️📄 Synced the summary PDF from the source, should be now available at https://preprint.neurolibre.org/10.55458/neurolibre.00025.pdf?no-cache |
@roboneuro accept |
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Ensure proper citation by uploading a plain text CITATION.cff file to the default branch of your repository. If using GitHub, a Cite this repository menu will appear in the About section, containing both APA and BibTeX formats. When exported to Zotero using a browser plugin, Zotero will automatically create an entry using the information contained in the .cff file. You can copy the contents for your CITATION.cff file here: CITATION.cff
If the repository is not hosted on GitHub, a .cff file can still be uploaded to set your preferred citation. Users will be able to manually copy and paste the citation. |
🌰🌱🌺 THIS IS NOT A DRILL, YOU HAVE JUST PUBLISHED A NEUROLIBRE REPRODUCIBLE PREPRINT! 🌺🌸🍀 Here's what you must now do:
Any issues? Notify your editorial technical team... |
@jcohenadad @mathieuboudreau congrats, this is now published! Sorry took a while as I was travelling. https://doi.org/10.55458/neurolibre.00025 Feel free to add |
amazing! thank you so much @agahkarakuzu and @mathieuboudreau now we are doing the review of the submitted MRM paper, so the manuscript and the code and figure will have to change 😅 |
@roboneuro build pdf |
I'm sorry human, I don't understand that. You can see what commands I support by typing:
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@roboneuro generate pdf |
Submitting author: @mathieuboudreau (Mathieu Boudreau)
Repository: https://github.com/shimming-toolbox/rf-shimming-7t
Branch with paper.md (empty if default branch): main
Version: r20240214
Editor: @pbellec
Reviewers: @agahkarakuzu
Reproducible preprint: https://preprint.neurolibre.org/10.55458/neurolibre.00025
Repository archive: 10.5281/zenodo.10844540
Data archive: 10.5281/zenodo.10844542
Book archive: 10.5281/zenodo.10844538
Docker archive: 10.5281/zenodo.10844544
Status
Status badge code:
Reviewers and authors:
Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)
Reviewer instructions & questions
@agahkarakuzu, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review.
First of all you need to run this command in a separate comment to create the checklist:
The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @pbellec know.
✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨
Checklists
@agahkarakuzu, please create your checklist typing:
@roboneuro generate my checklist
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