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Parallelize VCF to FASTA operation using multiprocessing module #22

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aays opened this issue Feb 28, 2020 · 0 comments
Open

Parallelize VCF to FASTA operation using multiprocessing module #22

aays opened this issue Feb 28, 2020 · 0 comments
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enhancement New feature or request low-priority Not essential to completion of project's first stage.

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aays commented Feb 28, 2020

VCF -> FASTA is currently implemented in slim_sims.py, but iterates through the VCFs one at a time.

Using mp could involve pulling in the full list of VCFs and then breaking them into chunks (potentially with itertools) and then splitting those chunks across cores.
@aays aays added enhancement New feature or request low-priority Not essential to completion of project's first stage. labels Feb 28, 2020
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enhancement New feature or request low-priority Not essential to completion of project's first stage.
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