diff --git a/docs/Announcements/Accessing_NeSI_Support_during_the_Easter_break.md b/docs/Announcements/Accessing_NeSI_Support_during_the_Easter_break.md index 25cec2db2..b17245a34 100644 --- a/docs/Announcements/Accessing_NeSI_Support_during_the_Easter_break.md +++ b/docs/Announcements/Accessing_NeSI_Support_during_the_Easter_break.md @@ -4,13 +4,13 @@ created_at: '2024-03-20T01:58:22Z' tags: - easter - holidays -title: Accessing NeSI Support during the Easter and ANZAC holidays +title: Accessing REANNZ HPC Support during the Easter and ANZAC holidays search: boost: 0.1 --- During the Easter break (18-21 April 2025) and ANZAC Day (25 April 2025), -[NeSI platform services](https://status.nesi.org.nz/) will be online and available, but +[REANNZ HPC platform services](https://status.nesi.org.nz/) will be online and available, but urgent / critical requests received during these times will be addressed on a best effort basis. @@ -24,11 +24,11 @@ sources of self-service support: - [Consult our User Documentation](https://www.docs.nesi.org.nz) pages for instructions and guidelines for using the systems. -- [Visit NeSI’s YouTube channel](https://www.youtube.com/playlist?list=PLvbRzoDQPkuGMWazx5LPA6y8Ji6tyl0Sp "https://www.youtube.com/playlist?list=PLvbRzoDQPkuGMWazx5LPA6y8Ji6tyl0Sp") for +- [Visit REANNZ HPC’s YouTube channel](https://www.youtube.com/playlist?list=PLvbRzoDQPkuGMWazx5LPA6y8Ji6tyl0Sp "https://www.youtube.com/playlist?list=PLvbRzoDQPkuGMWazx5LPA6y8Ji6tyl0Sp") for introductory training webinars. - {% include "partials/support_request.html" %} (Note: non-emergency requests will be addressed after the Easter and ANZAC breaks listed above) -On behalf of the entire NeSI team, we wish you a safe and relaxing +On behalf of the entire REANNZ HPC team, we wish you a safe and relaxing break. diff --git a/docs/Announcements/Autodeletion_of_Scratch_Filesystem.md b/docs/Announcements/Autodeletion_of_Scratch_Filesystem.md index 4d6b8634c..2a94b18d7 100644 --- a/docs/Announcements/Autodeletion_of_Scratch_Filesystem.md +++ b/docs/Announcements/Autodeletion_of_Scratch_Filesystem.md @@ -32,7 +32,7 @@ Our Support Documentation has more details on how our auto-deletion cleaner work - [Automatic cleaning of nobackup file system](../Storage/Automatic_cleaning_of_nobackup.md) -- [Where should I store my data on NeSI systems?](../Getting_Started/FAQs/Where_should_I_store_my_data_on_NeSI_systems.md) +- [Where should I store my data](../Getting_Started/FAQs/Where_should_I_store_my_data.md) If you have any questions or would like to discuss your data storage needs in more detail, come to one of our [Weekly Online Office Hours](https://docs.nesi.org.nz/Getting_Started/Getting_Help/Weekly_Online_Office_Hours/) or {% include "partials/support_request.html" %}. diff --git a/docs/Announcements/Release_Notes/index.md b/docs/Announcements/Release_Notes/index.md index b6c97fc85..c75c8b1b9 100644 --- a/docs/Announcements/Release_Notes/index.md +++ b/docs/Announcements/Release_Notes/index.md @@ -4,13 +4,13 @@ tags: [] title: Release Notes --- -NeSI publishes release notes for applications, 3rd party applications -and NeSI services. This section will function as a directory to find all +REANNZ HPC publishes release notes for applications, 3rd party applications +and REANNZ HPC services. This section will function as a directory to find all published release note articles with the label 'releasenote'. -## NeSI applications +## REANNZ HPC applications -You can find published release notes for NeSI applications in the +You can find published release notes for REANNZ HPC applications in the context of the structure of our documentation. Product context > release notes section > versioned release note @@ -20,10 +20,10 @@ be located under Storage, Long-Term Storage ## 3rd party applications 3rd party applications listed under [Supported Applications](../../Software/Available_Applications/index.md) -have child pages with details about the available versions on NeSI, and +have child pages with details about the available versions on REANNZ HPC, and a reference to the vendor release notes or documentation. -## NeSI services +## REANNZ HPC services -Jupyter on NeSI is a recent example of a service composed of multiple +OpenOnDemand is a recent example of a service composed of multiple components and dependencies that NeSI maintains. diff --git a/docs/Batch_Computing/Globus_Compute.md b/docs/Batch_Computing/Globus_Compute.md index 9d81ad5db..8fde2929e 100644 --- a/docs/Batch_Computing/Globus_Compute.md +++ b/docs/Batch_Computing/Globus_Compute.md @@ -40,7 +40,7 @@ highlight the specifics of working with the Mahuika endpoints. ## Requirements You must have a REANNZ HPC account, Globus account and have linked an identity from your Globus account to the NeSI Keycloak. This can be achieved by -navigating to the [NeSI HPC Storage](https://app.globus.org/file-manager?origin_id=763d50ee-e814-4080-878b-6a8be5cf7570) in the Globus +navigating to the [HPC Storage](https://app.globus.org/file-manager?origin_id=763d50ee-e814-4080-878b-6a8be5cf7570) in the Globus web app and ensuring you can see your REANNZ HPC files. ## Endpoints diff --git a/docs/Batch_Computing/Hardware.md b/docs/Batch_Computing/Hardware.md index cae8aa613..4bfdc01ea 100644 --- a/docs/Batch_Computing/Hardware.md +++ b/docs/Batch_Computing/Hardware.md @@ -78,7 +78,7 @@ You will always get the amount of memory you requested, even if running on a nod ## GPGPUs -NeSI has a range of Graphical Processing Units (GPUs) to accelerate compute-intensive research and support more analysis at scale. +REANNZ HPC has a range of Graphical Processing Units (GPUs) to accelerate compute-intensive research and support more analysis at scale. Depending on the type of GPU, you can access them in different ways, such as via batch scheduler (Slurm), or Virtual Machines (VMs). diff --git a/docs/Data_Transfer/Data_Transfer_Using_OnDemand.md b/docs/Data_Transfer/Data_Transfer_Using_OnDemand.md index dc1d66113..633361841 100644 --- a/docs/Data_Transfer/Data_Transfer_Using_OnDemand.md +++ b/docs/Data_Transfer/Data_Transfer_Using_OnDemand.md @@ -11,7 +11,7 @@ Mahuika OnDemand only a web browser to use. The instructions to use it are the s * See [OnDemand how to guide](../Interactive_Computing/OnDemand/how_to_guide.md) for more information about how to use OnDemand. -Once you have launched NeSI OnDemand on your web browser, click on the `Files` top tab and then click on `Home Directory`. +Once you have launched REANNZ HPC OnDemand on your web browser, click on the `Files` top tab and then click on `Home Directory`. ![OnDemand_File_directory.png](../assets/images/OnDemand_File_directory.png) diff --git a/docs/Getting_Started/Accessing_the_HPCs/X11.md b/docs/Getting_Started/Accessing_the_HPCs/X11.md index fe5839b7b..863ef3b9a 100644 --- a/docs/Getting_Started/Accessing_the_HPCs/X11.md +++ b/docs/Getting_Started/Accessing_the_HPCs/X11.md @@ -13,8 +13,7 @@ tags: set up. X-11 is a protocol for rendering graphical user interfaces (GUIs) that -can be sent along an SSH tunnel. If you plan on using a GUI on a NeSI -cluster you will need to have an X-Server and X-Forwarding set up. +can be sent along an SSH tunnel. If you plan on using a GUI on a Mahuika you will need to have an X-Server and X-Forwarding set up. diff --git a/docs/Getting_Started/Cheat_Sheets/Git-provider-setup.md b/docs/Getting_Started/Cheat_Sheets/Git-provider-setup.md index bcfded8cc..271a5a266 100644 --- a/docs/Getting_Started/Cheat_Sheets/Git-provider-setup.md +++ b/docs/Getting_Started/Cheat_Sheets/Git-provider-setup.md @@ -28,7 +28,7 @@ We will use GitHub as the example but the basic setup should be similar in other | [GitLab](https://docs.gitlab.com/user/ssh/) | [Bitbucket](https://support.atlassian.com/bitbucket-cloud/docs/set-up-personal-ssh-keys-on-linux/) -- On the NeSI cluster, run the command +- On the Mahuika cluster, run the command ```sh ssh-keygen -t ed25519 -C "your_github_account@example.com" @@ -61,7 +61,7 @@ We will use GitHub as the example but the basic setup should be similar in other ![SSH Key button](../../assets/images/Git-Reference_Sheet_0.png) -- In the "Title" field, put "Mahuika" or "NeSI". +- In the "Title" field, put "Mahuika" or "REANNZ HPC". - Paste your key into the "Key" field. diff --git a/docs/Getting_Started/FAQs/How_can_I_give_read_only_team_members_access_to_my_files.md b/docs/Getting_Started/FAQs/How_can_I_give_read_only_team_members_access_to_my_files.md index c909a4ff4..78c3a9a9b 100644 --- a/docs/Getting_Started/FAQs/How_can_I_give_read_only_team_members_access_to_my_files.md +++ b/docs/Getting_Started/FAQs/How_can_I_give_read_only_team_members_access_to_my_files.md @@ -21,7 +21,7 @@ read-only project code respectively. !!! warning If this process is interrupted part-way through, for example due to - your computer going to sleep and losing its connection to your NeSI + your computer going to sleep and losing its connection to your remote terminal session, your files can end up in a bad way. For this reason please **run all the following commands in a `screen` or `tmux` session.** diff --git a/docs/Getting_Started/FAQs/How_do_I_fix_my_locale_and_language_settings.md b/docs/Getting_Started/FAQs/How_do_I_fix_my_locale_and_language_settings.md index 0295fc800..35afa28a6 100644 --- a/docs/Getting_Started/FAQs/How_do_I_fix_my_locale_and_language_settings.md +++ b/docs/Getting_Started/FAQs/How_do_I_fix_my_locale_and_language_settings.md @@ -4,8 +4,8 @@ tags: [] description: Instructions for changing locale and language settings --- -When logging in to NeSI from some systems, such as Windows Subsystem for -Linux, you might get messages like the following while using NeSI (the +When logging in to Mahuika from some systems, such as Windows Subsystem for +Linux, you might get messages like the following while using Mahuika (the following message is obtained when running `man`): ```sh diff --git a/docs/Getting_Started/FAQs/Ive_run_out_of_storage_space.md b/docs/Getting_Started/FAQs/Ive_run_out_of_storage_space.md index 768fd01f6..6fbf48cbf 100644 --- a/docs/Getting_Started/FAQs/Ive_run_out_of_storage_space.md +++ b/docs/Getting_Started/FAQs/Ive_run_out_of_storage_space.md @@ -5,7 +5,7 @@ tags: title: I've run out of storage space --- -There are two tracked resources in the NeSI filesystem, *disk space* and +There are two tracked resources in the Mahuika filesystem, *disk space* and *inodes (number of files)*. Trying to write to a filesystem over its inode or disk quota will cause diff --git a/docs/Getting_Started/FAQs/What_software_environments_are_optimised_for_Machine_Learning_and_data_science.md b/docs/Getting_Started/FAQs/What_software_environments_are_optimised_for_Machine_Learning_and_data_science.md deleted file mode 100644 index ce4022c73..000000000 --- a/docs/Getting_Started/FAQs/What_software_environments_are_optimised_for_Machine_Learning_and_data_science.md +++ /dev/null @@ -1,46 +0,0 @@ ---- -created_at: '2021-05-25T02:15:36Z' -tags: [] -description: Information on software environments that are optimized for machine learning and data science -status: deprecated ---- - -When using NeSI's HPC -platform, you can bring your own code to install or you can access our extensive -software library which is already built and compiled, ready for you to -use. - -Examples of software environments on NeSI optimised for data science -include: - -- [R](../../Software/Available_Applications/R.md) and - [Python](../../Software/Available_Applications/TensorFlow_on_GPUs.md) users - can get right into using and exploring the several built-in packages - or create custom code. - -- [Jupyter on NeSI](../../Interactive_Computing/OnDemand/Apps/JupyterLab/index.md) is - particularly well suited to artificial intelligence and machine - learning workloads. [RStudio](../../Interactive_Computing/OnDemand/Apps/RStudio.md) - and/or Conda can be accessed via Jupyter. - -- Commonly used data science environments and libraries such as - [Keras](../../Software/Available_Applications/Keras.md), - [LambdaStack](../../Software/Available_Applications/Lambda_Stack.md), - [Tensorflow](../../Software/Available_Applications/TensorFlow_on_GPUs.md) - and [Conda](https://docs.conda.io/en/latest/) are available to - create comprehensive workflows. - -For more information about available software and applications, you -can [browse our catalogue](../../Software/Available_Applications/index.md). - -As pictured in the screenshot below, you can type keywords into the -catalogue's search field to browse by a specific software name or using -more broad terms such as "machine learning". - -![](../../assets/images/What_software_environments_on_NeSI_are_optimised_for_Machine_Learning_and_data_science.png) - -For more information on our model and approach to application -support, refer to our [policy for the management of scientific application software](../../Policy/Application_Support_Model.md). - -If you need help installing your software or would like to discuss your -software needs with us, {% include "partials/support_request.html" %}. diff --git a/docs/Getting_Started/FAQs/Where_should_I_store_my_data_on_NeSI_systems.md b/docs/Getting_Started/FAQs/Where_should_I_store_my_data.md similarity index 75% rename from docs/Getting_Started/FAQs/Where_should_I_store_my_data_on_NeSI_systems.md rename to docs/Getting_Started/FAQs/Where_should_I_store_my_data.md index a480c58bb..fff092c99 100644 --- a/docs/Getting_Started/FAQs/Where_should_I_store_my_data_on_NeSI_systems.md +++ b/docs/Getting_Started/FAQs/Where_should_I_store_my_data.md @@ -1,14 +1,16 @@ --- created_at: '2022-06-15T00:53:58Z' -tags: [] -description: Information on where to store data in the NeSI systems +title: Where Should I Store My Data? +tags: +- storage +description: Information on where to store data in the REANNZ HPC systems --- | Frequency of data being read | Frequency of data being written | Recommended option | | ---------------------------- | -------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------- | -| Often | Often (at least once every two months) | Store in your `/nobackup/` directory (but ensure key result data is copied to the persistent project directory). | -| Often | Seldom | Store in your `/project/` directory. | -| Seldom | Seldom | Apply for an allocation to use NeSI’s long-term storage service or store elsewhere (e.g. at your institution). | +| Often | Often (at least once every two months) | Store in your `/nesi/nobackup/` directory (but ensure key result data is copied to the persistent project directory). | +| Often | Seldom | Store in your `/nesi/project/` directory. | +| Seldom | Seldom | Apply for an allocation to use the long-term storage service or store elsewhere (e.g. at your institution). | In general, the **project directory** should be used for reference data, tools, and job submission and management scripts. The **nobackup diff --git a/docs/Getting_Started/FAQs/Why_does_my_program_crash.md b/docs/Getting_Started/FAQs/Why_does_my_program_crash.md index 72ec8a4ff..8fe5ba5aa 100644 --- a/docs/Getting_Started/FAQs/Why_does_my_program_crash.md +++ b/docs/Getting_Started/FAQs/Why_does_my_program_crash.md @@ -17,8 +17,6 @@ could crash with an [Out Of Memory exception](What_does_oom_kill_mean.md). Another common issue is an error in the code. For example an application could (may to unexpected input and missing error handling) call a -division by 0. Debugger can help to find the source of the issue. On the -NeSI systems are different debuggers available. +division by 0. Debugger can help to find the source of the issue. There are many are different debuggers available on Mahuika. For serial application the [Gnu debugger gdb](https://sourceware.org/gdb/download/onlinedocs/gdb/index.html) is -available. Furthermore, the [ARM DDT debugger](https://developer.arm.com/docs/101136/latest/ddt/getting-started) -is available, which can handle, parallel, serial, applications, written in C/C++, Fortran, and Python (limited support). +available. diff --git a/docs/Getting_Started/Projects/Applying_for_a_New_Project.md b/docs/Getting_Started/Projects/Applying_for_a_New_Project.md index 9ce3c7285..bc1f61267 100644 --- a/docs/Getting_Started/Projects/Applying_for_a_New_Project.md +++ b/docs/Getting_Started/Projects/Applying_for_a_New_Project.md @@ -44,7 +44,7 @@ information: describing your project's goals - The scientific domain and field of study (i.e. subdomain) your project belongs to -- The date on which you plan to start your computational work on NeSI +- The date on which you plan to start your computational work on REANNZ HPC (not the start date of the research programme as a whole, or of the research programme's current or expected funding) - Details of how your project is funded (this will help determine diff --git a/docs/Getting_Started/my-nesi-org-nz/Logging_in_to_my-nesi-org-nz.md b/docs/Getting_Started/my-nesi-org-nz/Logging_in_to_my-nesi-org-nz.md index a90a4e9c8..04b7370e2 100644 --- a/docs/Getting_Started/my-nesi-org-nz/Logging_in_to_my-nesi-org-nz.md +++ b/docs/Getting_Started/my-nesi-org-nz/Logging_in_to_my-nesi-org-nz.md @@ -23,13 +23,13 @@ federation](https://www.reannz.co.nz/products-and-services/tuakiri/join/), but many other institutions, including private sector organisations and most central and local government agencies, are not. -See also [Creating a NeSI Account +See also [Creating a REANNZ HPC Account Profile](../Creating_an_Account.md) ### Support for users outside the Tuakiri federation In case your organisation is not part of the Tuakiri federated identity -management service, a user can still [request a NeSI Account +management service, a user can still [request a REANNZ HPC Account profile.](https://my.nesi.org.nz/html/request_nesi_account) NeSI will (if approved) provision a so-called "virtual home account" on Tuakiri. @@ -62,15 +62,15 @@ correctly set for a specific purpose. To access the Tuakiri Attribute Validator, browse to this page: [https://attributes.tuakiri.ac.nz/snapshots/latest](https://attributes.tuakiri.ac.nz/snapshots/latest) -The primary identifier NeSI consumes is the +The primary identifier REANNZ HPC consumes is the attribute **auEduPersonSharedToken**. This is a so-called, "Tuakiri Core Attribute," expected to exist for every account. If your institution has issued you an empty or invalid auEduPersonSharedToken (rare), or if there is a difference between the value of your auEduPersonSharedToken as proffered by your institution's -identity provision service and its value as recorded in the NeSI -database (more common), you will not be able to log in to My NeSI. If +identity provision service and its value as recorded in the REANNZ HPC +database (more common), you will not be able to log in to My REANNZ HPC. If you cannot log in, please raise a support ticket with your institutions IT support. For troubleshooting the support team may ask you for a PDF of your diff --git a/docs/Getting_Started/my-nesi-org-nz/The_NeSI_Project_Request_Form.md b/docs/Getting_Started/my-nesi-org-nz/Project_Request_Form.md similarity index 88% rename from docs/Getting_Started/my-nesi-org-nz/The_NeSI_Project_Request_Form.md rename to docs/Getting_Started/my-nesi-org-nz/Project_Request_Form.md index 44f11d7fa..5d1169b38 100644 --- a/docs/Getting_Started/my-nesi-org-nz/The_NeSI_Project_Request_Form.md +++ b/docs/Getting_Started/my-nesi-org-nz/Project_Request_Form.md @@ -1,14 +1,9 @@ --- created_at: '2021-03-11T21:59:07Z' tags: [] -title: The NeSI Project Request Form -vote_count: 0 -vote_sum: 0 -zendesk_article_id: 360003648716 -zendesk_section_id: 360001059296 --- -See [Applying for a NeSI project](../Projects/Applying_for_a_New_Project.md)  +See [Applying for a project](../Projects/Applying_for_a_New_Project.md)  for how to access the form. ## Preparing a request to use NeSI resources @@ -45,4 +40,4 @@ save a draft. The request can only be successfully submitted once all mandatory data has been entered. The final section in the form 'Summary' will highlight missing data and allow you to navigate back to the relevant section. -  + diff --git a/docs/Getting_Started/my-nesi-org-nz/Release_Notes_my-nesi-org-nz/my-nesi-org-nz_release_notes_v2-0-1.md b/docs/Getting_Started/my-nesi-org-nz/Release_Notes_my-nesi-org-nz/my-nesi-org-nz_release_notes_v2-0-1.md index d94db9b43..cdfcd8452 100644 --- a/docs/Getting_Started/my-nesi-org-nz/Release_Notes_my-nesi-org-nz/my-nesi-org-nz_release_notes_v2-0-1.md +++ b/docs/Getting_Started/my-nesi-org-nz/Release_Notes_my-nesi-org-nz/my-nesi-org-nz_release_notes_v2-0-1.md @@ -20,7 +20,7 @@ search: in the sidebar and links to important functions - Improved [project application - form](../../../Getting_Started/my-nesi-org-nz/The_NeSI_Project_Request_Form.md) + form](../Project_Request_Form.md) with automatic draft state so you can continue the application at a later stage without the need to re-enter details diff --git a/docs/Interactive_Computing/Slurm_Interactive_Sessions.md b/docs/Interactive_Computing/Slurm_Interactive_Sessions.md index 10d23d7cb..9c74a6404 100644 --- a/docs/Interactive_Computing/Slurm_Interactive_Sessions.md +++ b/docs/Interactive_Computing/Slurm_Interactive_Sessions.md @@ -3,7 +3,7 @@ created_at: '2020-01-05T21:43:18Z' tags: - interactive - scheduling -description: How to run an interactive session on the NeSI cluster. +description: How to run an interactive session on the REANNZ HPC cluster. --- A SLURM interactive session reserves resources on compute nodes allowing diff --git a/docs/redirect_map.yml b/docs/redirect_map.yml index a86b91a93..5feb4f279 100644 --- a/docs/redirect_map.yml +++ b/docs/redirect_map.yml @@ -176,3 +176,5 @@ Getting_Started/Getting_Help/Weekly_Online_Office_Hours.md : Getting_Started/Wee Getting_Started/Getting_Help/System_status.md : Getting_Started/System_status.md Getting_Started/Getting_Help/Job_efficiency_review.md : Getting_Started/Job_efficiency_review.md Getting_Started/Getting_Help/Making_a_Helpful_Support_Request.md : Getting_Started/Making_a_Helpful_Support_Request.md +Getting_Started/FAQs/Where_should_I_store_my_data_on_NeSI_systems.md : Getting_Started/FAQs/Where_should_I_store_my_data.md +Getting_Started/my-nesi-org-nz/The_NeSI_Project_Request_Form.md : Getting_Started/my-nesi-org-nz/Project_Request_Form.md