forked from langbein-usgs/est_noise
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathcompile.sh
executable file
·218 lines (190 loc) · 9.88 KB
/
compile.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
#!/bin/sh
# script used to compile est_noise
# modify the gfortran call for mac to include "legacy" to compile the dfft stuff (-std=legacy)
# May need to do this for linux, too
if [ "$#" -ne 2 ]
then
echo Script used to compile est_noise
echo "Usage: compile.sh mac/linux i/g "
echo " where argument one designates the OS, mac or linux"
echo " and argument two designates the compiler"
echo " i -- intel ifort"
echo " g -- gfortran"
exit
fi
######
# for intel compiler and MKL library, see
# https://www.intel.com/content/www/us/en/developer/articles/tool/oneapi-standalone-components.html#fortran
# get two downloads --- one for the compiler and a second for mkl
# get the "off-line" versions
# Installation is easy (use sudo on linux)
# To setup compiler options, use
# https://www.intel.com/content/www/us/en/developer/tools/oneapi/onemkl-link-line-advisor.html#gs.dq7k7t
##########
ver=7.30
file=`echo "-o bin/est_noise"$ver" ./src/est_noise"$ver".f ./src/time.f ./src/funmin"$ver".f ./src/dfft.f ./src/NedlerMeadSimplex"$ver".f ./src/modify.f ./src/NedlerMeadSimplexEXP"$ver".f" ./src/filterfunc.f ./src/genNoise.f src/randnor.f ./src/GetData.f `
#file=`echo "-o bin/est_noise"$ver" ./src/est_noise"$ver".f ./src/time.f ./src/funmin"$ver"_test2.f ./src/dfft.f ./src/NedlerMeadSimplex"$ver".f ./src/modify.f ./src/NedlerMeadSimplexEXP"$ver".f" ./src/filterfunc.f ./src/genNoise.f src/randnor.f ./src/GetData.f `
echo $file
filepsd=`echo -o ./bin/psd_calc7 ./src/psd_calc7.f ./src/filterfunc.f ./src/dfft.f`
filegen=`echo -o ./bin/gen_noise7.02 ./src/gen_noise7.02.f ./src/genNoise.f ./src/filterfunc.f ./src/dfft.f ./src/randnor.f ./src/time.f `
filebust=`echo -o ./bin/bust_5 ./src/bust_5.f ./src/time.f ./src/GetData.f `
filewand=`echo -o bin/compare_wander7.01 src/compare_wander7.01.f src/time.f src/GetData.f src/filterfunc.f src/dfft.f src/randnor.f `
fileadj=`echo -o bin/adjust_1 src/adjust_1.f src/time.f src/GetData.f `
rm -f bin/est_noise"$ver" bin/psd_calc7 bin/gen_noise7.02 bin/adjust* bin/compare_wander* bin/bust*
if [ "$1" = "linux" ]
then
echo OS is $1
if [ "$2" = "g" ]
then
echo compiler is gfortran
echo compile est_noise7
########### UNCOMMENT ONE OF THE TW NEXT LINES
# gfortran $file -L/usr/lib -lopenblas -mcmodel=medium -O3
# this seems to work for CentOS
gfortran $file -L/usr/lib64 -lopenblas -mcmodel=medium -O3 -w -std=legacy ## CentOS
# This seems to work for ubuntu
# gfortran $file -static -L/usr/lib -lopenblas -mcmodel=medium -O3 -lpthread ## Ubuntu
################################
# gfortran $file lib/libopenblas.so -mcmodel=medium -O3 ####### Not used!
echo compile psd_calc7
gfortran $filepsd -O3 -mcmodel=medium -w -std=legacy
echo compile gen_noise
gfortran $filegen -O3 -mcmodel=medium -w -std=legacy
echo compile compare_wander
gfortran $filewand -O3 -mcmodel=medium -w -std=legacy
echo compile bust_5
gfortran $filebust -O3 -w -std=legacy
echo compile adjust
gfortran $fileadj -O3 -w -std=legacy
elif [ "$2" = "i" ]
then
echo compiler is intel ifort
echo compile est_noise7
# does static linking using free version of intel fortran and mkl; version 2021.6.0
source /opt/intel/oneapi/setvars.sh --force
ifort $file -I${MKLROOT}/include/intel64/ilp64 -i8 -I"${MKLROOT}/include" \
${MKLROOT}/lib/intel64/libmkl_blas95_ilp64.a ${MKLROOT}/lib/intel64/libmkl_lapack95_ilp64.a \
-Wl,--start-group ${MKLROOT}/lib/intel64/libmkl_intel_ilp64.a ${MKLROOT}/lib/intel64/libmkl_intel_thread.a \
${MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group \
-liomp5 -lpthread -lm -ldl \
-mcmodel medium -shared-intel -warn none -heap-arrays 2048 -O3
echo compile psd_calc7
ifort $filepsd -O3 -mcmodel medium \
-i8 -I"${MKLROOT}/include" \
-Wl,--start-group ${MKLROOT}/lib/intel64/libmkl_intel_ilp64.a ${MKLROOT}/lib/intel64/libmkl_intel_thread.a \
${MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl
echo compile gen_noise
ifort $filegen -O3 -mcmodel medium\
-i8 -I"${MKLROOT}/include" \
-Wl,--start-group ${MKLROOT}/lib/intel64/libmkl_intel_ilp64.a ${MKLROOT}/lib/intel64/libmkl_intel_thread.a \
${MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl
echo compile compare_wander
ifort $filewand -O3 -mcmodel medium \
-i8 -I"${MKLROOT}/include" \
-Wl,--start-group ${MKLROOT}/lib/intel64/libmkl_intel_ilp64.a ${MKLROOT}/lib/intel64/libmkl_intel_thread.a \
${MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl
echo compile bust_5
ifort $filebust -O3 \
-i8 -I"${MKLROOT}/include" \
-Wl,--start-group ${MKLROOT}/lib/intel64/libmkl_intel_ilp64.a ${MKLROOT}/lib/intel64/libmkl_intel_thread.a \
${MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl
echo compile adjust
ifort $fileadj -O3 \
-i8 -I"${MKLROOT}/include" \
-Wl,--start-group ${MKLROOT}/lib/intel64/libmkl_intel_ilp64.a ${MKLROOT}/lib/intel64/libmkl_intel_thread.a \
${MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl
else
echo "Invalid compiler option"
exit
fi
elif [ "$1" = "mac" ]
then
echo OS is $1
if [ "$2" = "g" ]
then
echo compiler is gfortran
echo compile est_noise
# gfortran $file -O3 -framework Accelerate -mcmodel=medium -Wl,-stack_size,0x80000000
# currently works
# gfortran $file -O3 -framework Accelerate -mcmodel=medium -Wa,-q -w -std=legacy
# use with openblas from homebrew
gfortran $file -I/usr/include/openblas/ -I/usr/local/Cellar/openblas/0.3.21/include/ \
-lopenblas -mcmodel=medium -O3 -w -std=legacy -L/usr//local/Cellar/openblas/0.3.21/lib/ \
-lpthread -lm -ldl -lgomp
# use with valgrind
# gfortran $file -O0 -g -framework Accelerate -mcmodel=medium -Wl,-stack_size,0x80000000 # -Wa,-q
# exit
# gfortran $file -O3 -framework Accelerate -mdynamic-no-pic
echo compile psd_calc7
gfortran $filepsd -O3 -Wa,-q -w -std=legacy
echo compile gen_noise
gfortran $filegen -O3 -Wa,-q -w -std=legacy
echo compile compare_wander
gfortran $filewand -O3 -Wa,-q -w -std=legacy
echo compile bust_5
gfortran $filebust -O3 -Wa,-q -w -std=legacy
echo compile adjust
gfortran $fileadj -O3 -Wa,-q -w -std=legacy
elif [ "$2" = "i" ]
then
echo compiler is intel ifort
echo compile est_noise
# used for older version of ifort
# /opt/intel/bin/compilervars.sh intel64
# /opt/intel/mkl/bin/mklvars.sh intel64
# ifort $file -w -i8 -I${MKLROOT}/include/intel64/ilp64 -I${MKLROOT}/include -O3 \
# ${MKLROOT}/lib/libmkl_blas95_ilp64.a ${MKLROOT}/lib/libmkl_intel_ilp64.a ${MKLROOT}/lib/libmkl_sequential.a ${MKLROOT}/lib/libmkl_core.a -lpthread -lm -ldl \
# -Wl,-stack_size,0x40000000
source /opt/intel/oneapi/setvars.sh --force
echo MKLROOT $MKLROOT
echo INCLUDE $INCLUDE
echo LD_LIB $LD_LIBRARY_PATH
echo LIB $LIBRARY_PATH
# dynamic linking
# ifort $file -Ofast -I${MKLROOT}/include/intel64/ilp64 -i8 -I"${MKLROOT}/include" \
# ${MKLROOT}/lib/libmkl_blas95_ilp64.a ${MKLROOT}/lib/libmkl_lapack95_ilp64.a \
# -L${MKLROOT}/lib -Wl,-rpath,${MKLROOT}/lib -lmkl_intel_ilp64 -lmkl_intel_thread \
# -lmkl_core -liomp5 -lpthread -lm -ldl \
# -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib \
# -Wl,-stack_size,0x40000000 -static-intel
# static linking?
ifort $file -Ofast -I${MKLROOT}/include/intel64/ilp64 -i8 -I"${MKLROOT}/include" \
${MKLROOT}/lib/libmkl_blas95_ilp64.a ${MKLROOT}/lib/libmkl_lapack95_ilp64.a \
${MKLROOT}/lib/libmkl_intel_ilp64.a ${MKLROOT}/lib/libmkl_intel_thread.a \
${MKLROOT}/lib/libmkl_core.a -liomp5 -lpthread -lm -ldl \
-L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib \
-Wl,-stack_size,0x40000000 -static-intel
# ifort $file -Ofast -I${MKLROOT}/include/intel64/ilp64 -i8 -I"${MKLROOT}/include" \
# ${MKLROOT}/lib/libmkl_blas95_ilp64.a ${MKLROOT}/lib/libmkl_lapack95_ilp64.a \
# ${MKLROOT}/lib/libmkl_intel_ilp64.a ${MKLROOT}/lib/libmkl_intel_thread.a \
# ${MKLROOT}/lib/libmkl_core.a -liomp5 -lpthread -lm -ldl \
# -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib \
# -Wl,-stack_size,0x40000000
# ifort $file -i8 -I${MKLROOT}/include/intel64/ilp64 -I${MKLROOT}/include ${MKLROOT}/lib/libmkl_blas95_ilp64.a ${MKLROOT}/lib/libmkl_lapack95_ilp64.a -L${MKLROOT}/lib -Wl,-rpath,${MKLROOT}/lib -lmkl_intel_ilp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl
# ifort $file -Wl,-stack_size,0x40000000 -O3 -i8 -I${MKLROOT}/include/intel64/ilp64 -I${MKLROOT}/include ${MKLROOT}/lib/libmkl_blas95_ilp64.a ${MKLROOT}/lib/libmkl_lapack95_ilp64.a -L${MKLROOT}/lib -Wl,-rpath,${MKLROOT}/lib -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl
# ifort $file -Wl,-stack_size,0x40000000 -O3 -L/Library/Frameworks/Intel_MKL.framework/Versions/Current/lib/universal -lmkl_lapack -lmkl_core -lmkl_intel_lp64 -lmkl_intel_ilp64 -lmkl_intel_thread
echo compile psd_calc7
ifort -O3 $filepsd -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib
echo compile gen_noise
ifort -O3 $filegen -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib
echo compile compare_wander
ifort $filewand -O3 -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib
echo compile bust_5
ifort $filebust -O3 -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib
echo compile adjust
ifort $fileadj -O3 -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib
else
echo "Invalid compiler option"
exit
fi
else
echo "invalid OS"
exit
fi
ls -l bin/est_noise"$ver"
ls -l bin/psd_calc7
ls -l bin/gen_noise7.02
ls -l bin/compare_wander7.01
ls -l bin/bust_5
ls -l bin/adjust_1
exit