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action items 8 Jan 2025 #54

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rvosa opened this issue Jan 8, 2025 · 1 comment
Open
3 tasks

action items 8 Jan 2025 #54

rvosa opened this issue Jan 8, 2025 · 1 comment

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@rvosa
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rvosa commented Jan 8, 2025 •
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  • debug early stop codons issue, e.g. in BGENL047-23, BGENL274-23, BGENL449-23, BGENL455-23, BGENL581-23, BGENL641-23, BGENL728-24, BGENL1370-24
  • debug BLAST discrepancies as per email thread with Dan and Ben
  • re-parameterize triage.py script to avoid all ambiguities
@SchistoDan
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Some samples with possible BLAST discrepencies to look into (not exhaustive - see XE-4013_barcode_fails-BV_output_verification.xlsx sheet 2 for ~100 possible discrepencies):
BSNHM1011-24_r_1_s_50_BSNHM1011-24
BSNHM1422-24_r_1_s_50_BSNHM1422-24
BSNHM1423-24_r_1_s_50_BSNHM1423-24
BSNHM1424-24_r_1_s_50_BSNHM1424-24
BSNHM1425-24_r_1_s_50_BSNHM1425-24
BSNHM1440-24_r_1_s_50_BSNHM1440-24
BSNHM1443-24_r_1_s_50_BSNHM1443-24
BSNTN2664-24_r_1_s_100_BSNTN2664-24_fastp

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@rvosa @SchistoDan