Update harmony-service lib and update docker platform to amd64 (#33)

Author: flamingbear

Diff for: .pre-commit-config.yaml

@@ -2,20 +2,20 @@ ci:
   autofix_prs: false
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-json
       - id: check-yaml
       - id: check-added-large-files
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.5.5
+    rev: v0.6.9
     hooks:
       - id: ruff
-        args: ["--fix", "--show-fixes", "--select", "I"]
+        args: ["--fix", "--show-fixes", "--extend-select", "I"]
   - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 24.4.2
+    rev: 24.10.0
     hooks:
       - id: black-jupyter
         args: ["--skip-string-normalization"]

Diff for: CHANGELOG.md

@@ -4,6 +4,14 @@ HyBIG follows semantic versioning. All notable changes to this project will be
 documented in this file. The format is based on [Keep a
 Changelog](http://keepachangelog.com/en/1.0.0/).
 
+## [v2.0.1] - 2024-10-06
+
+### Changed
+
+* Updates service image to be built on AMD64.
+* Updates internal libraries
+
+
 ## [v2.0.0] - 2024-07-19
 
 **DAS-2180** - Adds pip installable library.
@@ -62,7 +70,8 @@ outlined by the NASA open-source guidelines.
 For more information on internal releases prior to NASA open-source approval,
 see legacy-CHANGELOG.md.
 
-[unreleased]:https://github.com/nasa/harmony-browse-image-generator/compare/2.0.0..HEAD
+[unreleased]:https://github.com/nasa/harmony-browse-image-generator/compare/2.0.1..HEAD
+[v2.0.1]:https://github.com/nasa/harmony-browse-image-generator/compare/2.0.0..2.0.1
 [v2.0.0]:https://github.com/nasa/harmony-browse-image-generator/compare/1.2.2..2.0.0
 [v1.2.2]: https://github.com/nasa/harmony-browse-image-generator/compare/1.2.1..1.2.2
 [v1.2.1]: https://github.com/nasa/harmony-browse-image-generator/compare/1.2.0..1.2.1

Diff for: bin/build-image

@@ -7,6 +7,7 @@
 # 2022-01-03: Updated Dockerfile path and added comments for tags.
 # 2023-04-04: Updated for the Harmony Browse Image Generator (HyBIG).
 # 2024-01-22: Updated image name to: ghcr.io/nasa/harmony-browse-image-generator.
+# 2024-10-06: Updated to support amd64.
 #
 ###############################################################################
 
@@ -29,4 +30,4 @@ tag=${1:-latest}
 #   version number from `docker/service_version.txt`.
 # - "latest", so the test Dockerfile can use the service image as a base image.
 #
-docker build -t ${image}:${tag} -t ${image}:latest -f docker/service.Dockerfile .
+docker build --platform linux/amd64 -t ${image}:${tag} -t ${image}:latest -f docker/service.Dockerfile .

Diff for: bin/build-test

@@ -12,6 +12,7 @@
 # 2022-01-03: Updated Dockerfile path.
 # 2023-04-04: Updated for the Harmony Browse Image Generator (HyBIG).
 # 2024-01-22: Updated image name to: ghcr.io/nasa/harony-browse-image-generator-test.
+# 2024-10-06: Updated to support amd64.
 #
 ###############################################################################
 
@@ -26,4 +27,4 @@ if [ ! -z "$old" ] && [ "$2" != "--no-delete" ]; then
 fi
 
 # Build the image
-docker build -t ${image}:${tag} -f docker/tests.Dockerfile .
+docker build --platform linux/amd64 -t ${image}:${tag} -f docker/tests.Dockerfile .

Diff for: bin/run-test

@@ -8,6 +8,7 @@
 # 2021-01-05: Updated for JUnit output.
 # 2023-04-04: Updated for the Harmony Browse Image Generator (HyBIG).
 # 2024-01-23: Updated to use new GitHub-related images.
+# 2024-10-06: Updated to support amd64.
 #
 ###############################################################################
 
@@ -24,7 +25,7 @@ mkdir -p coverage
 
 # Run the tests in a Docker container with mounted volumes for XML report
 # output and test coverage reporting
-docker run --rm \
+docker run --platform linux/amd64 --rm \
 	-v $(pwd)/test-reports:/home/tests/reports \
 	-v $(pwd)/coverage:/home/tests/coverage \
 	ghcr.io/nasa/harmony-browse-image-generator-test "$@"

Diff for: docker/service_version.txt

@@ -1 +1 @@
-2.0.0
+2.0.1

Diff for: docs/HyBIG-Example-Usage.ipynb

@@ -57,11 +57,11 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from harmony import Collection, Environment, Client, Request\n",
-    "\n",
     "# creates an output directory for the downloaded files\n",
     "from pathlib import Path\n",
     "\n",
+    "from harmony import Client, Collection, Environment, Request\n",
+    "\n",
     "output_dir = Path('./hybig-output')\n",
     "Path.mkdir(output_dir, exist_ok=True)"
    ]

Diff for: docs/requirements.txt

@@ -1,2 +1,2 @@
-notebook==7.0.3
+notebook==7.2.2
 harmony-py~=0.4.14

Diff for: harmony_service/__main__.py

@@ -3,7 +3,7 @@
 from argparse import ArgumentParser
 from sys import argv
 
-from harmony import is_harmony_cli, run_cli, setup_cli
+from harmony_service_lib import is_harmony_cli, run_cli, setup_cli
 
 from .adapter import BrowseImageGeneratorAdapter
 from .exceptions import SERVICE_NAME

Diff for: harmony_service/adapter.py

@@ -12,15 +12,20 @@
 from shutil import rmtree
 from tempfile import mkdtemp
 
-from harmony import BaseHarmonyAdapter
-from harmony.message import Source as HarmonySource
-from harmony.message_utility import (
+from harmony_service_lib import BaseHarmonyAdapter
+from harmony_service_lib.message import Source as HarmonySource
+from harmony_service_lib.message_utility import (
     has_crs,
     has_scale_extents,
     has_scale_sizes,
     has_valid_scale_extents,
 )
-from harmony.util import bbox_to_geometry, download, generate_output_filename, stage
+from harmony_service_lib.util import (
+    bbox_to_geometry,
+    download,
+    generate_output_filename,
+    stage,
+)
 from pystac import Asset, Catalog, Item
 
 from harmony_service.exceptions import HyBIGInvalidMessageError, HyBIGServiceError

Diff for: harmony_service/exceptions.py

@@ -1,6 +1,6 @@
 """Module defining harmony service errors raised by HyBIG service."""
 
-from harmony.util import HarmonyException
+from harmony_service_lib.util import HarmonyException
 
 SERVICE_NAME = 'harmony-browse-image-generator'
 

Diff for: hybig/browse.py

@@ -9,8 +9,8 @@
 import numpy as np
 import rasterio
 from affine import dumpsw
-from harmony.message import Message as HarmonyMessage
-from harmony.message import Source as HarmonySource
+from harmony_service_lib.message import Message as HarmonyMessage
+from harmony_service_lib.message import Source as HarmonySource
 from matplotlib.cm import ScalarMappable
 from matplotlib.colors import Normalize
 from numpy import ndarray

Diff for: hybig/browse_utility.py

@@ -1,6 +1,6 @@
 """Module containing utility functionality for browse generation."""
 
-from harmony.message import Message as HarmonyMessage
+from harmony_service_lib.message import Message as HarmonyMessage
 
 
 def get_harmony_message_from_params(params: dict | None) -> HarmonyMessage:

Diff for: hybig/color_utility.py

@@ -7,7 +7,7 @@
 
 import numpy as np
 import requests
-from harmony.message import Source as HarmonySource
+from harmony_service_lib.message import Source as HarmonySource
 from osgeo_utils.auxiliary.color_palette import ColorPalette
 from pystac import Item
 from rasterio.io import DatasetReader

Diff for: hybig/crs.py

@@ -10,7 +10,7 @@
 
 """
 
-from harmony.message import SRS
+from harmony_service_lib.message import SRS
 from pyproj.crs import CRS as pyCRS
 
 # pylint: disable-next=no-name-in-module

Diff for: hybig/sizes.py

@@ -13,8 +13,12 @@
 
 import numpy as np
 from affine import Affine
-from harmony.message import Message
-from harmony.message_utility import has_dimensions, has_scale_extents, has_scale_sizes
+from harmony_service_lib.message import Message
+from harmony_service_lib.message_utility import (
+    has_dimensions,
+    has_scale_extents,
+    has_scale_sizes,
+)
 
 # pylint: disable-next=no-name-in-module
 from rasterio.crs import CRS

Diff for: pip_requirements.txt

@@ -1,8 +1,8 @@
-harmony-service-lib~=1.0.27
+harmony-service-lib~=2.0.0
 matplotlib==3.9.0
 numpy==1.26.4
-pillow==10.3.0
+pillow==10.4.0
 pyproj==3.6.1
-pystac~=0.5.6
+pystac~=1.0.1
 rasterio==1.3.10
-rioxarray==0.15.5
+rioxarray==0.17.0

Diff for: tests/test_service/test_adapter.py

@@ -7,8 +7,8 @@
 from unittest.mock import call, patch
 
 import numpy as np
-from harmony.message import Message
-from harmony.util import config
+from harmony_service_lib.message import Message
+from harmony_service_lib.util import config
 from pystac import Catalog
 from rasterio.transform import array_bounds, from_bounds
 from rasterio.warp import Resampling

Diff for: tests/test_service/unit/test_adapter_unit.py

@@ -2,8 +2,8 @@
 from unittest import TestCase
 from unittest.mock import Mock
 
-from harmony.message import Message
-from harmony.util import config
+from harmony_service_lib.message import Message
+from harmony_service_lib.util import config
 from pystac import Asset, Item
 
 from harmony_service.adapter import BrowseImageGeneratorAdapter

Diff for: tests/unit/test_browse.py

@@ -8,9 +8,8 @@
 from unittest.mock import MagicMock, Mock, call, patch
 
 import numpy as np
-from harmony.message import SRS
-from harmony.message import Message as HarmonyMessage
-from harmony.message import Source as HarmonySource
+from harmony_service_lib.message import Message as HarmonyMessage
+from harmony_service_lib.message import Source as HarmonySource
 from numpy.testing import assert_array_equal
 from osgeo_utils.auxiliary.color_palette import ColorPalette
 from PIL import Image

Diff for: tests/unit/test_color_utility.py

@@ -2,7 +2,7 @@
 from unittest import TestCase
 from unittest.mock import Mock, patch
 
-from harmony.message import Source as HarmonySource
+from harmony_service_lib.message import Source as HarmonySource
 from osgeo_utils.auxiliary.color_palette import ColorPalette
 from pystac import Asset, Item
 from rasterio import DatasetReader

Diff for: tests/unit/test_crs.py

@@ -8,7 +8,7 @@
 from unittest.mock import patch
 
 from affine import Affine
-from harmony.message import SRS
+from harmony_service_lib.message import SRS
 from rasterio.crs import CRS
 from rioxarray import open_rasterio
 

Diff for: tests/unit/test_sizes.py

@@ -5,7 +5,7 @@
 from unittest.mock import MagicMock, patch
 
 import rasterio
-from harmony.message import Message
+from harmony_service_lib.message import Message
 from rasterio import Affine
 from rasterio.crs import CRS
 from rioxarray import open_rasterio

Diff for: tests/utilities.py

@@ -3,7 +3,7 @@
 from collections import namedtuple
 from datetime import datetime
 
-from harmony.util import bbox_to_geometry
+from harmony_service_lib.util import bbox_to_geometry
 from pystac import Asset, Catalog, Item
 
 Granule = namedtuple('Granule', ['url', 'media_type', 'roles'])