Merge pull request #53 from msk-access/release/0.2.7

Release/0.2.7

Author: buehlere

docs/cli.md

@@ -728,8 +728,8 @@ $ main vardict case-control filter [OPTIONS]
 
 * `-i, --inputVcf FILE`: Input vcf generated by vardict which needs to be processed  [required]
 * `--tsampleName TEXT`: Name of the tumor Sample  [required]
+* `-ad, --alleledepth INTEGER RANGE`: [x>=1] [required]
 * `-dp, --totalDepth INTEGER RANGE`: Tumor total depth threshold  [default: 20; x>=20]
-* `-ad, --alleledepth INTEGER RANGE`: [x>=1]
 * `-tnr, --tnRatio INTEGER`: Tumor-Normal variant fraction ratio threshold  [default: 1]
 * `-vf, --variantFraction FLOAT`: Tumor variant fraction threshold  [default: 5e-05]
 * `-mq, --minQual INTEGER`: Minimum variant call quality  [default: 0]