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DESCRIPTION
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Package: EpiEstim
Version: 2.4
Title: Estimate Time Varying Reproduction Numbers from Epidemic Curves
Authors@R: c(person("Anne", "Cori", email = "[email protected]", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-8443-9162")),
person("Simon", "Cauchemez", role = "ctb"),
person("Neil M.", "Ferguson", role = "ctb", comment = c(ORCID = "0000-0002-1154-8093")),
person("Christophe", "Fraser", role = "ctb", comment = c(ORCID = "0000-0003-2399-9657")),
person("Elisabeth", "Dahlqwist", role = "ctb", comment = c(ORCID = "0000-0001-5797-6803")),
person("P. Alex", "Demarsh", role = "ctb"),
person("Thibaut", "Jombart", role = "ctb", comment = c(ORCID = "0000-0003-2226-8692")),
person("Zhian N.", "Kamvar", role = "ctb", comment = c(ORCID = "0000-0003-1458-7108")),
person("Justin", "Lessler", role = "ctb", comment = c(ORCID = "0000-0002-9741-8109")),
person("Shikun", "Li", role = "ctb"),
person("Jonathan A.", "Polonsky", role = "ctb", comment = c(ORCID = "0000-0002-8634-4255")),
person("Jake", "Stockwin", role = "ctb"),
person("Robin", "Thompson", role = "ctb", comment = c(ORCID = "0000-0001-8545-5212")),
person("Rolina", "van Gaalen", role = "ctb"),
person("Rebecca", "Nash", email = "[email protected]", role = "ctb", comment = c(ORCID = "0000-0002-5213-4364")),
person("Sangeeta", "Bhatia", role = "ctb", comment = c(ORCID = "0000-0001-6525-101X")),
person("Jack", "Wardle", role = "ctb", comment = c(ORCID = "0000-0002-5363-1653")),
person("Andrea", "Brizzi", role = "ctb", comment = c(ORCID = "0000-0002-5639-8260"))
)
Maintainer: Anne Cori <[email protected]>
Description: Tools to quantify transmissibility throughout
an epidemic from the analysis of time series of incidence as described in
Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004)
<doi:10.1093/aje/kwh255>.
URL: https://github.com/mrc-ide/EpiEstim
BugReports: https://github.com/mrc-ide/EpiEstim/issues
Depends: R (>= 3.3.0)
Imports:
coarseDataTools (>= 0.6-4),
stats,
graphics,
reshape2,
ggplot2,
gridExtra,
fitdistrplus,
coda,
incidence (>= 1.7.0),
scales,
grDevices,
abind,
epitrix,
distcrete,
patchwork (>= 1.2.0)
Suggests:
testthat,
utils,
vdiffr,
covr,
knitr,
rmarkdown,
kableExtra,
hrbrthemes,
MCMCglmm,
projections,
dplyr,
readxl,
gghighlight
License: GPL (>=2)
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.3.2
VignetteBuilder: knitr