evoClustRNA.py -m `cat ../mapping.txt` is replaced with
-m <file>
in this file:
AACY023581040:r14aacy23+m+pk2
target:rp14+m+pk2
AJ630128:r14aj63pk
: to map alignment id with folder name, dont use | any more. Use newline.
# can be used to mark comments.