Unable to install

[gregmcinnes]

Hi there, I haven't been able to install RNA-FM. I've tried using the recommended conda install from the github repo, pip, on a mac, on a linux cluster, and nothing works. Could you provide a little more detail on the system requirements?

Thank you. Looks like nice work and I'd love to try it out.

[liyu95]

Could you let us know the detailed error returned from the mac or Linux cluster? We are glad to help.

[albustruong]

Hi team, to second on the inability to install the dependencies of RNA-FM. Here is the log.txt of the failure:

Channels:

• pytorch
• conda-forge
• defaults
• bioconda
  Platform: osx-arm64
  Collecting package metadata (repodata.json): ...working... done
  Solving environment: ...working... failed

PackagesNotFoundError: The following packages are not available from current channels:

• zstd==1.4.9=ha95c52a_0
• zlib==1.2.11=h7b6447c_3
• xz==5.2.5=h7b6447c_0
• tornado==6.1=py38h27cfd23_0
• tk==8.6.10=hbc83047_0
• sqlite==3.36.0=hc218d9a_0
• sip==4.19.13=py38he6710b0_0
• setuptools==52.0.0=py38h06a4308_0
• readline==8.1=h27cfd23_0
• qt==5.9.7=h5867ecd_1
• pytorch==1.9.0=py3.8_cuda11.1_cudnn8.0.5_0
• python==3.8.11=h12debd9_0_cpython
• pyqt==5.9.2=py38h05f1152_4
• pip==21.2.2=py38h06a4308_0
• pillow==8.3.1=py38h2c7a002_0
• pcre==8.45=h295c915_0
• pandas==1.3.1=py38h8c16a72_0
• openssl==1.1.1k=h27cfd23_0
• openjpeg==2.4.0=hb52868f_1
• openh264==2.1.1=h780b84a_0
• numpy-base==1.20.3=py38h74d4b33_0
• numpy==1.20.3=py38hf144106_0
• numexpr==2.7.3=py38h22e1b3c_1
• ninja==1.10.2=h4bd325d_0
• nettle==3.6=he412f7d_0
• ncurses==6.2=he6710b0_1
• mkl_random==1.2.2=py38h1abd341_0
• mkl_fft==1.3.0=py38h42c9631_2
• mkl-service==2.4.0=py38h497a2fe_0
• mkl==2021.3.0=h06a4308_520
• matplotlib-base==3.4.2=py38hab158f2_0
• matplotlib==3.4.2=py38h06a4308_0
• lz4-c==1.9.3=h9c3ff4c_1
• libxml2==2.9.12=h03d6c58_0
• libxcb==1.14=h7b6447c_0
• libwebp-base==1.2.0=h7f98852_2
• libuv==1.42.0=h7f98852_0
• libuuid==1.0.3=h1bed415_2
• libtiff==4.2.0=h85742a9_0
• libstdcxx-ng==11.1.0=h56837e0_8
• libpng==1.6.37=h21135ba_2
• libiconv==1.16=h516909a_0
• libgomp==9.3.0=h5101ec6_17
• libgcc-ng==9.3.0=h5101ec6_17
• libffi==3.3=he6710b0_2
• ld_impl_linux-64==2.35.1=h7274673_9
• lcms2==2.12=h3be6417_0
• lame==3.100=h7f98852_1001
• kiwisolver==1.3.1=py38h2531618_0
• jpeg==9b=h024ee3a_2
• intel-openmp==2021.3.0=h06a4308_3350
• icu==58.2=he6710b0_3
• gstreamer==1.14.0=h28cd5cc_2
• gst-plugins-base==1.14.0=h8213a91_2
• gnutls==3.6.13=h85f3911_1
• gmp==6.2.1=h58526e2_0
• glib==2.69.0=h5202010_0
• freetype==2.10.4=h0708190_1
• fontconfig==2.13.1=h6c09931_0
• ffmpeg==4.3=hf484d3e_0
• expat==2.4.1=h2531618_2
• dbus==1.13.18=hb2f20db_0
• cycler==0.10.0=py38_0
• cudatoolkit==11.1.1=h6406543_8
• certifi==2021.5.30=py38h06a4308_0
• ca-certificates==2021.7.5=h06a4308_1
• bzip2==1.0.8=h7f98852_4
• brotli==1.0.9=he6710b0_2
• bottleneck==1.3.2=py38heb32a55_1
• blas==1.0=mkl
• _openmp_mutex==4.5=1_gnu
• _libgcc_mutex==0.1=main

Current channels:

• https://conda.anaconda.org/pytorch
• https://conda.anaconda.org/conda-forge
• https://repo.anaconda.com/pkgs/main
• https://repo.anaconda.com/pkgs/r
• https://conda.anaconda.org/bioconda

To search for alternate channels that may provide the conda package you're
looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

I'm using Apple Silicon chip.

Thanks a lot
Albus