How many datasets should be listed in the new version?

[chunkaili217]

test.keepX = list (
nitrogen = c(1:5),
enzyme = c(1:4),
soil = c(1:3),
otu = c(seq(100, 700, 10))
)
t1 = proc.time()
BPPARAM <- BiocParallel::SnowParam(workers = parallel::detectCores()-1)
tune.TCGA = tune.block.splsda(X = data, Y = Y, ncomp = ncomp,
test.keepX = test.keepX, design = design,
validation = 'Mfold', folds = 5, nrepeat = 1,
BPPARAM = BPPARAM, dist = "centroids.dist")

list.keepX = tune.TCGA$choice.keepX

final.diablo.model = block.splsda(X = data, Y = Y, ncomp = ncomp,
keepX = list.keepX, design = design)

network(final.diablo.model, blocks = c(1,2,3,4),
color.node = c('orchid','orange','tomato','sky blue'), layout.auto, cutoff = 0.6)

Error: 'comp' must be either NULL or a list of length 4.

[mixOmicsTeam]

Hi @chunkaili217 , sorry for the delay in getting back to you, mixOmics has been without a maintainer for the past few months. Please could you respond if this is still an issue and let me know when the error is occurring - is it when running block.splsda or network? Thanks!