From 422d09993f5d4e2ed636daaf0369ae0e6eafcff1 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Sat, 16 May 2026 23:47:07 +0200 Subject: [PATCH 1/5] Add submission UUID file --- .../a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json | 44 +++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json diff --git a/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json b/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json new file mode 100644 index 00000000..b29bdceb --- /dev/null +++ b/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json @@ -0,0 +1,44 @@ +{ + "accession": "MITE9999999", + "status": "pending", + "changelog": [ + { + "version": "1", + "date": "2026-05-16", + "contributors": [ + "0000-0002-0771-9611" + ], + "reviewers": [ + "BBBBBBBBBBBBBBBBBBBBBBBB" + ], + "comment": "New entry." + } + ], + "enzyme": { + "name": "AndE", + "databaseIds": { + "uniprot": "A0A097ZPF7", + "genpept": "" + }, + "references": [ + "doi:" + ] + }, + "reactions": [ + { + "evidence": { + "evidenceCode": [], + "references": [ + "doi:" + ] + }, + "reactions": [ + { + "products": [ + "" + ] + } + ] + } + ] +} \ No newline at end of file From 3f3466811f0563f4e0664589778ae4e89eb7bc09 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Sat, 16 May 2026 23:55:33 +0200 Subject: [PATCH 2/5] Update submission --- .../a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json | 42 +++++++++++++------ 1 file changed, 29 insertions(+), 13 deletions(-) diff --git a/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json b/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json index b29bdceb..74b11b9b 100644 --- a/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json +++ b/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json @@ -16,29 +16,45 @@ ], "enzyme": { "name": "AndE", + "description": "FAD-dependent monooxygenase", + "references": [ + "doi:10.1021/ja508127q" + ], "databaseIds": { "uniprot": "A0A097ZPF7", - "genpept": "" + "genpept": "BAP81859.1", + "mibig": "BGC0002612" }, - "references": [ - "doi:" - ] + "cofactors": { + "organic": [ + "FAD" + ] + } }, "reactions": [ { - "evidence": { - "evidenceCode": [], - "references": [ - "doi:" - ] - }, + "tailoring": [ + "Oxidation" + ], + "description": "Epoxidation of farnesyl-DHDMP to give epoxyfarnesyl-DHDMP.", + "reactionSMARTS": "[#6]12-[#6](-[#8]-[#6]-[#6]=1-[#6@](/[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6])-[#6])-[#6])-[#6])(\\[#6])-[#6](=[#8])-[#6](-[#6])=[#6]-2-[#8])=[#8]>>[#6]12-[#6](-[#8]-[#6]-[#6]=1-[#6@](/[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6]-[#6]-[#6@@]1/[#8]-[#6]-1(-[#6])-[#6])-[#6])-[#6])(\\[#6])-[#6](=[#8])-[#6](-[#6])=[#6]-2-[#8])=[#8]", "reactions": [ { + "substrate": "CC(C)=CCCC(C)=CCCC(C)=CC[C@@]1(C)C(=O)C(C)=C(O)C2=C1COC2=O", "products": [ - "" - ] + "CC(=CC[C@@]1(C)C(=O)C(C)=C(O)C2=C1COC2=O)CCC=C(C)CC[C@@H]1OC1(C)C" + ], + "isIntermediate": true } - ] + ], + "evidence": { + "evidenceCode": [ + "Heterologous expression" + ], + "references": [ + "doi:10.1021/ja508127q" + ] + } } ] } \ No newline at end of file From aa2659e80641221b43aa71697c8130d011ae68da Mon Sep 17 00:00:00 2001 From: mite-bot Date: Sun, 17 May 2026 12:31:23 +0200 Subject: [PATCH 3/5] Delete mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json --- .../a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json | 60 ------------------- 1 file changed, 60 deletions(-) delete mode 100644 mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json diff --git a/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json b/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json deleted file mode 100644 index 74b11b9b..00000000 --- a/mite_data/data/a0f9daf8-5170-11f1-9ef6-bb4e59819b6d.json +++ /dev/null @@ -1,60 +0,0 @@ -{ - "accession": "MITE9999999", - "status": "pending", - "changelog": [ - { - "version": "1", - "date": "2026-05-16", - "contributors": [ - "0000-0002-0771-9611" - ], - "reviewers": [ - "BBBBBBBBBBBBBBBBBBBBBBBB" - ], - "comment": "New entry." - } - ], - "enzyme": { - "name": "AndE", - "description": "FAD-dependent monooxygenase", - "references": [ - "doi:10.1021/ja508127q" - ], - "databaseIds": { - "uniprot": "A0A097ZPF7", - "genpept": "BAP81859.1", - "mibig": "BGC0002612" - }, - "cofactors": { - "organic": [ - "FAD" - ] - } - }, - "reactions": [ - { - "tailoring": [ - "Oxidation" - ], - "description": "Epoxidation of farnesyl-DHDMP to give epoxyfarnesyl-DHDMP.", - "reactionSMARTS": "[#6]12-[#6](-[#8]-[#6]-[#6]=1-[#6@](/[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6])-[#6])-[#6])-[#6])(\\[#6])-[#6](=[#8])-[#6](-[#6])=[#6]-2-[#8])=[#8]>>[#6]12-[#6](-[#8]-[#6]-[#6]=1-[#6@](/[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6]-[#6]-[#6@@]1/[#8]-[#6]-1(-[#6])-[#6])-[#6])-[#6])(\\[#6])-[#6](=[#8])-[#6](-[#6])=[#6]-2-[#8])=[#8]", - "reactions": [ - { - "substrate": "CC(C)=CCCC(C)=CCCC(C)=CC[C@@]1(C)C(=O)C(C)=C(O)C2=C1COC2=O", - "products": [ - "CC(=CC[C@@]1(C)C(=O)C(C)=C(O)C2=C1COC2=O)CCC=C(C)CC[C@@H]1OC1(C)C" - ], - "isIntermediate": true - } - ], - "evidence": { - "evidenceCode": [ - "Heterologous expression" - ], - "references": [ - "doi:10.1021/ja508127q" - ] - } - } - ] -} \ No newline at end of file From e4e8bddeb7c7441e3432e1bd401381d349f193d9 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Sun, 17 May 2026 12:31:24 +0200 Subject: [PATCH 4/5] Add submission --- mite_data/data/MITE9999999.json | 61 +++++++++++++++++++++++++++++++++ 1 file changed, 61 insertions(+) create mode 100644 mite_data/data/MITE9999999.json diff --git a/mite_data/data/MITE9999999.json b/mite_data/data/MITE9999999.json new file mode 100644 index 00000000..63e4b5dc --- /dev/null +++ b/mite_data/data/MITE9999999.json @@ -0,0 +1,61 @@ +{ + "accession": "MITE9999999", + "status": "active", + "changelog": [ + { + "version": "1", + "date": "2026-05-16", + "contributors": [ + "0000-0002-0771-9611" + ], + "reviewers": [ + "0000-0001-6534-6609" + ], + "comment": "New entry. Reviewer 1 improved reaction descriptions." + } + ], + "enzyme": { + "name": "AndE", + "description": "FAD-dependent epoxidase", + "references": [ + "doi:10.1021/ja508127q" + ], + "databaseIds": { + "uniprot": "A0A097ZPF7", + "genpept": "BAP81859.1", + "mibig": "BGC0002612" + }, + "cofactors": { + "organic": [ + "FAD" + ] + } + }, + "reactions": [ + { + "tailoring": [ + "Oxidation" + ], + "description": "Epoxidation of farnesyl-DHDMP to give epoxyfarnesyl-DHDMP in the anditomin biosynthetic pathway..", + "reactionSMARTS": "[#6]12-[#6](-[#8]-[#6]-[#6]=1-[#6@](/[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6])-[#6])-[#6])-[#6])(\\[#6])-[#6](=[#8])-[#6](-[#6])=[#6]-2-[#8])=[#8]>>[#6]12-[#6](-[#8]-[#6]-[#6]=1-[#6@](/[#6]-[#6]=[#6](-[#6]-[#6]-[#6]=[#6](-[#6]-[#6]-[#6@@]1/[#8]-[#6]-1(-[#6])-[#6])-[#6])-[#6])(\\[#6])-[#6](=[#8])-[#6](-[#6])=[#6]-2-[#8])=[#8]", + "reactions": [ + { + "substrate": "CC(C)=CCCC(C)=CCCC(C)=CC[C@@]1(C)C(=O)C(C)=C(O)C2=C1COC2=O", + "products": [ + "CC(=CC[C@@]1(C)C(=O)C(C)=C(O)C2=C1COC2=O)CCC=C(C)CC[C@@H]1OC1(C)C" + ], + "isIntermediate": true, + "description": "Conversion of farnesyl-DHDMP to epoxyfarnesyl-DHDMP." + } + ], + "evidence": { + "evidenceCode": [ + "Heterologous expression" + ], + "references": [ + "doi:10.1021/ja508127q" + ] + } + } + ] +} \ No newline at end of file From 7a12dc3ffb0ee007e13415c458b45279a8e062b6 Mon Sep 17 00:00:00 2001 From: "Mitja M. Zdouc" <95709447+mmzdouc@users.noreply.github.com> Date: Sun, 17 May 2026 21:07:09 +0200 Subject: [PATCH 5/5] Update and rename MITE9999999.json to MITE0000353.json --- mite_data/data/{MITE9999999.json => MITE0000353.json} | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) rename mite_data/data/{MITE9999999.json => MITE0000353.json} (98%) diff --git a/mite_data/data/MITE9999999.json b/mite_data/data/MITE0000353.json similarity index 98% rename from mite_data/data/MITE9999999.json rename to mite_data/data/MITE0000353.json index 63e4b5dc..7e7dfdb7 100644 --- a/mite_data/data/MITE9999999.json +++ b/mite_data/data/MITE0000353.json @@ -1,5 +1,5 @@ { - "accession": "MITE9999999", + "accession": "MITE0000353", "status": "active", "changelog": [ { @@ -58,4 +58,4 @@ } } ] -} \ No newline at end of file +}