From e141790505375f2873a14ad4b1e17fd2874f30dc Mon Sep 17 00:00:00 2001 From: Zoran Pandovski Date: Wed, 19 Oct 2022 15:54:35 +0200 Subject: [PATCH 01/11] Update README.md --- README.md | 28 +++++++++++++++++++++++++++- 1 file changed, 27 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 2419a5b..948418e 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,28 @@ -# type_infer +# MindsDB Type Infer +

+ MindsDB +
+ +

+
+ Type Infer workflow + Python supported + PyPI version +PyPI - Downloads + MindsDB Community +
+ +

+ Website + | + Docs + | + Community Slack + | + Contribute + | + Hacktoberfest +

+ +
Automated type inference for Machine Learning pipelines. From 5d7dfe030e35b39bb358d31f8187acff30c415e2 Mon Sep 17 00:00:00 2001 From: Zoran Pandovski Date: Wed, 19 Oct 2022 15:58:50 +0200 Subject: [PATCH 02/11] Update python-package.yml This PR adds docs and readme file to the ignored list for Integration, Unit tests and deploy to pip actions. --- .github/workflows/python-package.yml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 5e21426..e1daaef 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -1,4 +1,4 @@ -name: Integration and Unit Tests Type Infer +name: Type Infer Tests Workflow on: push: @@ -6,7 +6,9 @@ on: branches: - stable - staging - + paths-ignore: + - 'docssrc/**' + - 'README.md' jobs: test: From 4c706a8baeca0027a189125cda28079f54386dd4 Mon Sep 17 00:00:00 2001 From: Zoran Pandovski Date: Wed, 19 Oct 2022 16:00:07 +0200 Subject: [PATCH 03/11] Create CODE_OF_CONDUCT.md --- CODE_OF_CONDUCT.md | 128 +++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 128 insertions(+) create mode 100644 CODE_OF_CONDUCT.md diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md new file mode 100644 index 0000000..4a7a750 --- /dev/null +++ b/CODE_OF_CONDUCT.md @@ -0,0 +1,128 @@ +# Contributor Covenant Code of Conduct + +## Our Pledge + +We as members, contributors, and leaders pledge to make participation in our +community a harassment-free experience for everyone, regardless of age, body +size, visible or invisible disability, ethnicity, sex characteristics, gender +identity and expression, level of experience, education, socio-economic status, +nationality, personal appearance, race, religion, or sexual identity +and orientation. + +We pledge to act and interact in ways that contribute to an open, welcoming, +diverse, inclusive, and healthy community. + +## Our Standards + +Examples of behavior that contributes to a positive environment for our +community include: + +* Demonstrating empathy and kindness toward other people +* Being respectful of differing opinions, viewpoints, and experiences +* Giving and gracefully accepting constructive feedback +* Accepting responsibility and apologizing to those affected by our mistakes, + and learning from the experience +* Focusing on what is best not just for us as individuals, but for the + overall community + +Examples of unacceptable behavior include: + +* The use of sexualized language or imagery, and sexual attention or + advances of any kind +* Trolling, insulting or derogatory comments, and personal or political attacks +* Public or private harassment +* Publishing others' private information, such as a physical or email + address, without their explicit permission +* Other conduct which could reasonably be considered inappropriate in a + professional setting + +## Enforcement Responsibilities + +Community leaders are responsible for clarifying and enforcing our standards of +acceptable behavior and will take appropriate and fair corrective action in +response to any behavior that they deem inappropriate, threatening, offensive, +or harmful. + +Community leaders have the right and responsibility to remove, edit, or reject +comments, commits, code, wiki edits, issues, and other contributions that are +not aligned to this Code of Conduct, and will communicate reasons for moderation +decisions when appropriate. + +## Scope + +This Code of Conduct applies within all community spaces, and also applies when +an individual is officially representing the community in public spaces. +Examples of representing our community include using an official e-mail address, +posting via an official social media account, or acting as an appointed +representative at an online or offline event. + +## Enforcement + +Instances of abusive, harassing, or otherwise unacceptable behavior may be +reported to the community leaders responsible for enforcement at +admin@mindsdb.com. +All complaints will be reviewed and investigated promptly and fairly. + +All community leaders are obligated to respect the privacy and security of the +reporter of any incident. + +## Enforcement Guidelines + +Community leaders will follow these Community Impact Guidelines in determining +the consequences for any action they deem in violation of this Code of Conduct: + +### 1. Correction + +**Community Impact**: Use of inappropriate language or other behavior deemed +unprofessional or unwelcome in the community. + +**Consequence**: A private, written warning from community leaders, providing +clarity around the nature of the violation and an explanation of why the +behavior was inappropriate. A public apology may be requested. + +### 2. Warning + +**Community Impact**: A violation through a single incident or series +of actions. + +**Consequence**: A warning with consequences for continued behavior. No +interaction with the people involved, including unsolicited interaction with +those enforcing the Code of Conduct, for a specified period of time. This +includes avoiding interactions in community spaces as well as external channels +like social media. Violating these terms may lead to a temporary or +permanent ban. + +### 3. Temporary Ban + +**Community Impact**: A serious violation of community standards, including +sustained inappropriate behavior. + +**Consequence**: A temporary ban from any sort of interaction or public +communication with the community for a specified period of time. No public or +private interaction with the people involved, including unsolicited interaction +with those enforcing the Code of Conduct, is allowed during this period. +Violating these terms may lead to a permanent ban. + +### 4. Permanent Ban + +**Community Impact**: Demonstrating a pattern of violation of community +standards, including sustained inappropriate behavior, harassment of an +individual, or aggression toward or disparagement of classes of individuals. + +**Consequence**: A permanent ban from any sort of public interaction within +the community. + +## Attribution + +This Code of Conduct is adapted from the [Contributor Covenant][homepage], +version 2.0, available at +https://www.contributor-covenant.org/version/2/0/code_of_conduct.html. + +Community Impact Guidelines were inspired by [Mozilla's code of conduct +enforcement ladder](https://github.com/mozilla/diversity). + +[homepage]: https://www.contributor-covenant.org + +For answers to common questions about this code of conduct, see the FAQ at +https://www.contributor-covenant.org/faq. Translations are available at +https://www.contributor-covenant.org/translations. From 8adb1ec960dc260ecc3be7069447ad197e06196d Mon Sep 17 00:00:00 2001 From: Zoran Pandovski Date: Wed, 19 Oct 2022 16:04:02 +0200 Subject: [PATCH 04/11] Create CONTRIBUTING.md This PR adds contributing guide --- CONTRIBUTING.md | 48 ++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) create mode 100644 CONTRIBUTING.md diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 0000000..c035a4b --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,48 @@ +# Contributing to Mindsdb + +Being part of the core MindsDB team is accessible to anyone who is motivated and wants to be part of that journey! + +Please see below how to contribute to the project, also refer to the contributing documentation. + +## How can you help us? + +* Report a bug +* Improve documentation +* Discuss the code implementation +* Submit a bug fix +* Propose new features +* Test Mindsdb + +## Code contributions + +In general, we follow the "fork-and-pull" Git workflow. +1. Fork the `type_infer` repository +2. Clone the repository +3. Make changes and commit them +4. Push your local branch to your fork +5. Submit a Pull request so that we can review your changes +6. Write a commit message +7. Make sure that the CI tests are GREEN + +> NOTE: Be sure to merge the latest from "upstream" before making a pull request! Also, make the PR to the staging branch. + +## Feature and Bug reports + +We use GitHub issues to track bugs and features. Report them by opening a [new issue](https://github.com/mindsdb/type_infer/issues/new) and fill out all of the required inputs. + +## Code review process + +The Pull Request reviews are done on a regular basis. Please, make sure you respond to our feedback/questions. + +## Community + +If you have additional questions or you want to chat with the MindsDB core team, please join our [Slack community](https://join.slack.com/t/mindsdbcommunity/shared_invite/zt-o8mrmx3l-5ai~5H66s6wlxFfBMVI6wQ) or post at [Github Discussions](https://github.com/mindsdb/type_infer/discussions). + +To get updates on MindsDB’s latest announcements, releases, and events, sign up for our [Monthly Community Newsletter](https://mindsdb.com/newsletter/?utm_medium=community&utm_source=github&utm_campaign=mindsdb%20repo). + +Join our mission of democratizing machine learning! + +## Contributor Code of Conduct + +Please note that this project is released with a [Contributor Code of Conduct](https://github.com/mindsdb/type_infer/blob/staging/CODE_OF_CONDUCT.md). By participating in this project, you agree to abide by its terms. + From 6ad5dce16b69f8d4f569b8ff0abe31d289a4867d Mon Sep 17 00:00:00 2001 From: Zoran Pandovski Date: Wed, 19 Oct 2022 16:10:15 +0200 Subject: [PATCH 05/11] Update python-package.yml Ignore all .md files in the root --- .github/workflows/python-package.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index e1daaef..569cb4c 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -8,7 +8,7 @@ on: - staging paths-ignore: - 'docssrc/**' - - 'README.md' + - '**.md' jobs: test: From 07a418a4cb98726bf8eb11060638147a4c640d71 Mon Sep 17 00:00:00 2001 From: Andrea Cognolato Date: Thu, 20 Oct 2022 14:32:46 +0200 Subject: [PATCH 06/11] Fix instructions to set up a dev environment --- docssrc/source/index.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docssrc/source/index.rst b/docssrc/source/index.rst index 6d83025..d5c7b4c 100644 --- a/docssrc/source/index.rst +++ b/docssrc/source/index.rst @@ -32,7 +32,7 @@ We recommend doing the above inside a newly-created python virtual environment. Setting up a dev environment ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Clone the repository -- Run ``cd type_infer && pip install requirements.txt`` +- Run ``cd type_infer && pip install --editable .`` - Add it to your python path (e.g. by adding ``export PYTHONPATH='/where/you/cloned/repo':$PYTHONPATH`` as a newline at the end of your ``~/.bashrc`` file) - Check that the unit-tests are passing by going into the directory where you cloned and running: ``python -m unittest discover tests`` From f9a736e1e411bbd164a2fb70495ac93a1db0dadb Mon Sep 17 00:00:00 2001 From: Andrea Cognolato Date: Fri, 21 Oct 2022 00:27:35 +0200 Subject: [PATCH 07/11] Fix warning in division by log --- type_infer/helpers.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/type_infer/helpers.py b/type_infer/helpers.py index 2166525..496d0a5 100644 --- a/type_infer/helpers.py +++ b/type_infer/helpers.py @@ -101,7 +101,10 @@ def get_identifier_description(data: Iterable, column_name: str, data_dtype: dty for i, _ in enumerate(str_data[0]): N = len(set(x[i] for x in str_data)) S = st.entropy([*Counter(x[i] for x in str_data).values()]) - randomness_per_index.append(S / np.log(N)) + if S == 0: + randomness_per_index.append(0.0) + else: + randomness_per_index.append(S / np.log(N)) if np.mean(randomness_per_index) > 0.95: return 'Hash-like identifier' From 37a989319607ecdea9a7db6034e177ce0c0a6395 Mon Sep 17 00:00:00 2001 From: Andrea Cognolato Date: Fri, 21 Oct 2022 14:06:50 +0200 Subject: [PATCH 08/11] Create docstring for `infer.infer_types` Update links to be hyperlinks --- type_infer/base.py | 2 +- type_infer/infer.py | 17 +++++++++++++++++ 2 files changed, 18 insertions(+), 1 deletion(-) diff --git a/type_infer/base.py b/type_infer/base.py index 2c114cc..94fc108 100644 --- a/type_infer/base.py +++ b/type_infer/base.py @@ -9,7 +9,7 @@ class TypeInformation: """ For a dataset, provides information on columns types, how they're used, and any other potential identifiers. - TypeInformation is generated within ``data.infer_types``, where small samples of each column are evaluated in a custom framework to understand what kind of data type the model is. The user may override data types, but it is recommended to do so within a JSON-AI config file. + ``TypeInformation`` is generated within :py:func:`infer.infer_types`, where small samples of each column are evaluated in a custom framework to understand what kind of data type the model is. The user may override data types, but it is recommended to do so within a JSON-AI config file. :param dtypes: For each column's name, the associated data type inferred. :param additional_info: Any possible sub-categories or additional descriptive information. diff --git a/type_infer/infer.py b/type_infer/infer.py index 7ae1872..7fcb031 100644 --- a/type_infer/infer.py +++ b/type_infer/infer.py @@ -365,6 +365,23 @@ def sample_data(df: pd.DataFrame): def infer_types(data: pd.DataFrame, pct_invalid: float, seed_nr: int = 420, mp_cutoff: int = 1e4) -> TypeInformation: + """ + Infers the data types of each column of the dataset by analyzing a small sample of + each column's items. + + Inputs + ---------- + data : pd.DataFrame + The input dataset for which we want to infer data type information. + pct_invalid : float + The percentage, i.e. a float between 0.0 and 100.0, of invalid values that are + accepted before failing the type inference for a column. + seed_nr : int, optional + Seed for the random number generator, by default 420 + mp_cutoff : int, optional + How many elements in the dataframe before switching to parallel processing, by + default 1e4. + """ seed(seed_nr) type_information = TypeInformation() sample_df = sample_data(data) From b8d99c6ef93b6782bfbcff0f93045287593057bb Mon Sep 17 00:00:00 2001 From: Vanshvardhan Singh <77499499+vanshv@users.noreply.github.com> Date: Wed, 26 Oct 2022 12:24:54 +0530 Subject: [PATCH 09/11] Added Documentation link to README.md --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index 948418e..314eb21 100644 --- a/README.md +++ b/README.md @@ -26,3 +26,6 @@ Automated type inference for Machine Learning pipelines. + +# Documentation +Documentation link From 8ba09ef03bae6829ba8dc255023043c597a80786 Mon Sep 17 00:00:00 2001 From: Patricio Cerda Mardini Date: Thu, 3 Nov 2022 11:55:20 +0300 Subject: [PATCH 10/11] python 3.7 support --- .github/workflows/python-package.yml | 2 +- poetry.lock | 423 +++++++++++++++------------ pyproject.toml | 4 +- 3 files changed, 235 insertions(+), 194 deletions(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 569cb4c..2bcd2ea 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -16,7 +16,7 @@ jobs: strategy: matrix: os: [ubuntu-latest] - python-version: [3.8,3.9] + python-version: [3.7,3.8,3.9] steps: - uses: actions/checkout@v2 - name: Set up Python ${{ matrix.python-version }} diff --git a/poetry.lock b/poetry.lock index 156f6f9..a7fc8a9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -8,14 +8,15 @@ python-versions = ">=3.7" [package.dependencies] colorama = {version = "*", markers = "platform_system == \"Windows\""} +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] name = "colorama" -version = "0.4.5" +version = "0.4.6" description = "Cross-platform colored terminal text." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" [[package]] name = "colorlog" @@ -47,6 +48,23 @@ typing-inspect = ">=0.4.0" [package.extras] dev = ["flake8", "hypothesis", "ipython", "mypy (>=0.710)", "portray", "pytest (>=6.2.3)", "simplejson", "types-dataclasses"] +[[package]] +name = "importlib-metadata" +version = "5.0.0" +description = "Read metadata from Python packages" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} +zipp = ">=0.5" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] +perf = ["ipython"] +testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] + [[package]] name = "joblib" version = "1.2.0" @@ -126,11 +144,11 @@ twitter = ["twython"] [[package]] name = "numpy" -version = "1.23.4" +version = "1.21.6" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false -python-versions = ">=3.8" +python-versions = ">=3.7,<3.11" [[package]] name = "packaging" @@ -145,19 +163,19 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pandas" -version = "1.5.0" +version = "1.1.5" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false -python-versions = ">=3.8" +python-versions = ">=3.6.1" [package.dependencies] -numpy = {version = ">=1.20.3", markers = "python_version < \"3.10\""} -python-dateutil = ">=2.8.1" -pytz = ">=2020.1" +numpy = ">=1.15.4" +python-dateutil = ">=2.7.3" +pytz = ">=2017.2" [package.extras] -test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] +test = ["hypothesis (>=3.58)", "pytest (>=4.0.2)", "pytest-xdist"] [[package]] name = "pyparsing" @@ -183,7 +201,7 @@ six = ">=1.5" [[package]] name = "pytz" -version = "2022.5" +version = "2022.6" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -191,7 +209,7 @@ python-versions = "*" [[package]] name = "regex" -version = "2022.9.13" +version = "2022.10.31" description = "Alternative regular expression module, to replace re." category = "main" optional = false @@ -199,19 +217,14 @@ python-versions = ">=3.6" [[package]] name = "scipy" -version = "1.9.2" -description = "Fundamental algorithms for scientific computing in Python" +version = "1.7.3" +description = "SciPy: Scientific Library for Python" category = "main" optional = false -python-versions = ">=3.8" +python-versions = ">=3.7,<3.11" [package.dependencies] -numpy = ">=1.18.5,<1.26.0" - -[package.extras] -dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"] -doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"] -test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] +numpy = ">=1.16.5,<1.23.0" [[package]] name = "six" @@ -266,10 +279,22 @@ python-versions = "*" mypy-extensions = ">=0.3.0" typing-extensions = ">=3.7.4" +[[package]] +name = "zipp" +version = "3.10.0" +description = "Backport of pathlib-compatible object wrapper for zip files" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] +testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] + [metadata] lock-version = "1.1" -python-versions = ">=3.8,<3.10" -content-hash = "630228c5f650d2b4faf0ba79324ee5a32a22dd0acbb4f0af8fdda5a4515b9597" +python-versions = ">=3.7,<3.10" +content-hash = "740960d8f0dd06f6ca3414da1124b5406bc684de7a965e9303133d1ca220dcc2" [metadata.files] click = [ @@ -277,8 +302,8 @@ click = [ {file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"}, ] colorama = [ - {file = "colorama-0.4.5-py2.py3-none-any.whl", hash = "sha256:854bf444933e37f5824ae7bfc1e98d5bce2ebe4160d46b5edf346a89358e99da"}, - {file = "colorama-0.4.5.tar.gz", hash = "sha256:e6c6b4334fc50988a639d9b98aa429a0b57da6e17b9a44f0451f930b6967b7a4"}, + {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"}, + {file = "colorama-0.4.6.tar.gz", hash = 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"] license = "GPL-3.0" @@ -8,7 +8,7 @@ readme = "README.md" packages = [{include = "type_infer"}] [tool.poetry.dependencies] -python = ">=3.8,<3.10" +python = ">=3.7,<3.10" python-dateutil = "^2.1" scipy = "^1" numpy = "^1.15" From 0c46013fce1a5ad247e6e17843346c314951c583 Mon Sep 17 00:00:00 2001 From: Patricio Cerda Mardini Date: Thu, 3 Nov 2022 11:58:53 +0300 Subject: [PATCH 11/11] version bump -> 0.0.7 --- type_infer/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/type_infer/__init__.py b/type_infer/__init__.py index ce3f8ca..fb71641 100644 --- a/type_infer/__init__.py +++ b/type_infer/__init__.py @@ -4,7 +4,7 @@ from type_infer import helpers -__version__ = '0.0.6' +__version__ = '0.0.7' __all__ = ['base', 'dtype', 'infer', 'helpers', '__version__']