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import automation - make sure we are picking up with correct proteins file #361

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aclum opened this issue Jan 23, 2025 · 0 comments
Open

import automation - make sure we are picking up with correct proteins file #361

aclum opened this issue Jan 23, 2025 · 0 comments

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@aclum
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aclum commented Jan 23, 2025

Figure out what to do with the _proteins.faa files. There are 4 that match the current import_prefix.

import_suffix: _proteins.faa

aclum@perlmutter:login08:/global/cfs/cdirs/m3408/aim2/dev/bioscales_mapping/neon_analysis_projects/Ga0597046> ls *_proteins.faa
Ga0597046_cds_proteins.faa Ga0597046_genemark_proteins.faa Ga0597046_prodigal_proteins.faa Ga0597046_proteins.faa

what we want is the Ga0597046_proteins.faa file.
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