From 86fed4ae629b76d9232ea637d95a8779b81a4923 Mon Sep 17 00:00:00 2001 From: sbello Date: Wed, 15 Jan 2025 21:33:47 +0000 Subject: [PATCH] Update imports and components --- src/ontology/imports/chebi_import.owl | 4 +- src/ontology/imports/cl_import.owl | 4 +- src/ontology/imports/go_import.owl | 4 +- src/ontology/imports/mpath_import.owl | 4 +- src/ontology/imports/nbo_import.owl | 4 +- src/ontology/imports/pato_import.owl | 4 +- src/ontology/imports/pr_import.owl | 84 +- src/ontology/imports/ro_import.owl | 4 +- src/ontology/imports/uberon_import.owl | 2974 +++++++++++++++++------- src/patterns/definitions.owl | 4 +- 10 files changed, 2148 insertions(+), 942 deletions(-) diff --git a/src/ontology/imports/chebi_import.owl b/src/ontology/imports/chebi_import.owl index 8e806abe..76955450 100644 --- a/src/ontology/imports/chebi_import.owl +++ b/src/ontology/imports/chebi_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2025-01-14") +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/cl_import.owl b/src/ontology/imports/cl_import.owl index f9dfdb98..07e30261 100644 --- a/src/ontology/imports/cl_import.owl +++ b/src/ontology/imports/cl_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2025-01-14") +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl index 3559657a..a0865dcf 100644 --- a/src/ontology/imports/go_import.owl +++ b/src/ontology/imports/go_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2025-01-14") +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/mpath_import.owl b/src/ontology/imports/mpath_import.owl index 595088c5..032a3441 100644 --- a/src/ontology/imports/mpath_import.owl +++ b/src/ontology/imports/mpath_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2025-01-14") +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/nbo_import.owl b/src/ontology/imports/nbo_import.owl index c8532fdd..d70a92f7 100644 --- a/src/ontology/imports/nbo_import.owl +++ b/src/ontology/imports/nbo_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2025-01-14") +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl index c0118bc0..00449c79 100644 --- a/src/ontology/imports/pato_import.owl +++ b/src/ontology/imports/pato_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2025-01-14") +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/pr_import.owl b/src/ontology/imports/pr_import.owl index 83ffe47c..87c5774b 100644 --- a/src/ontology/imports/pr_import.owl +++ b/src/ontology/imports/pr_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - -Annotation( ) -Annotation(owl:versionInfo "2025-01-14") + +Annotation( ) +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) @@ -172,7 +172,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -392,11 +392,11 @@ SubClassOf( (molecular_function) -AnnotationAssertion(Annotation( "GOC:pdt") "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.") +AnnotationAssertion(Annotation( "GOC:pdt") "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.") AnnotationAssertion( "molecular function") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0003674") -AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.") +AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.") AnnotationAssertion(rdfs:label "molecular_function") # Class: (cellular_component) @@ -419,11 +419,11 @@ SubClassOf( (biological_process) -AnnotationAssertion(Annotation( "GOC:pdt") "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.") +AnnotationAssertion(Annotation( "GOC:pdt") "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.") AnnotationAssertion( "biological process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0008150") -AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.") +AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.") AnnotationAssertion(rdfs:label "biological_process") # Class: (calcium-activated potassium channel activity) @@ -488,11 +488,11 @@ AnnotationAssertion(Annotation( "IEDB:BP") "native protein") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000000001") -AnnotationAssertion(rdfs:comment "The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB].") +AnnotationAssertion(rdfs:comment "The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB).") AnnotationAssertion(rdfs:label "protein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -599,7 +599,6 @@ SubClassOf( (interleukin-17) AnnotationAssertion(Annotation( "PMID:17982105") Annotation( "PMID:18280574") "A protein that is a T cell-derived cytokine that may play an important role in the initiation or maintenance of the proinflammatory response. Except for IL-17B, all other IL-17 family members are homodimers containing five highly conserved cysteine residues forming characteristic cystein-knot structure, similar to that found in the TGF-beta-like cystine-knot (PR:000000008). This class consists of six cytokines. Among them, interleukin 17A (IL-17) and IL-17F are expressed by a novel subset of CD4+ helper T (Th) cells and play a critical role in inflammation and autoimmunity. On the other hand, IL-17E, also called IL-25, has been associated with allergic responses.") -AnnotationAssertion( "PANTHER:PTHR21295") AnnotationAssertion( "PIRSF:PIRSF003430") AnnotationAssertion( "IL17") AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "fam:IL-17") @@ -714,7 +713,6 @@ SubClassOf( (interleukin-15) AnnotationAssertion(Annotation( "PRO:CNA") "A protein that is a translation product of the human IL15 gene or a 1:1 ortholog thereof.") -AnnotationAssertion( "PIRSF:PIRSF001946") AnnotationAssertion( "IL-15") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "IL15") AnnotationAssertion( "protein") @@ -724,15 +722,15 @@ AnnotationAssertion(rdfs:label "in AnnotationAssertion( ) SubClassOf( ) -# Class: (interleukin-16) +# Class: (pro-interleukin-16) AnnotationAssertion(Annotation( "PRO:CNA") "A protein that is a translation product of the human IL16 gene or a 1:1 ortholog thereof.") -AnnotationAssertion( "PIRSF:PIRSF038750") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "IL16") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000001374") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "interleukin-16") +AnnotationAssertion(rdfs:label "pro-interleukin-16") +AnnotationAssertion( ) SubClassOf( ) # Class: (interleukin-18) @@ -929,14 +927,14 @@ SubClassOf( (interleukin-10) -AnnotationAssertion(Annotation( "PANTHER:PTHR11585:SF1") Annotation( "PRO:JAN") "A class 2 cytokine, IL-10 type that is a translation product of the human IL10 gene or a 1:1 ortholog thereof. Active interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulfide bonds.") +AnnotationAssertion(Annotation( "PRO:JAN") "A class 2 cytokine, IL-10 type that is a translation product of the human IL10 gene or a 1:1 ortholog thereof.") AnnotationAssertion( "CSIF") AnnotationAssertion( "IL-10") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "IL10") AnnotationAssertion( "cytokine synthesis inhibitory factor") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000001471") -AnnotationAssertion(rdfs:comment "Category=gene.") +AnnotationAssertion(rdfs:comment "Category=gene. Note: Active interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulfide bonds.") AnnotationAssertion(rdfs:label "interleukin-10") AnnotationAssertion( ) SubClassOf( ) @@ -1371,18 +1369,19 @@ AnnotationAssertion(rdfs:label "al AnnotationAssertion( ) SubClassOf( ) -# Class: (pancreatic prohormone) +# Class: (pancreatic polypeptide prohormone) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human PPY gene or a 1:1 ortholog thereof.") AnnotationAssertion( "PP") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PPY") AnnotationAssertion( "obinepitide") AnnotationAssertion( "pancreatic polypeptide") +AnnotationAssertion( "pancreatic prohormone") AnnotationAssertion( "protein") AnnotationAssertion(Annotation( ) "PNP") AnnotationAssertion( "PR:000013164") AnnotationAssertion(rdfs:comment "Category=gene.") -AnnotationAssertion(rdfs:label "pancreatic prohormone") +AnnotationAssertion(rdfs:label "pancreatic polypeptide prohormone") AnnotationAssertion( ) SubClassOf( ) @@ -1639,14 +1638,14 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (interleukin-16 proteolytic cleavage product) +# Class: (pro-interleukin-16 proteolytic cleavage product) -AnnotationAssertion(Annotation( "PRO:DNx") "An interleukin-16 that has been processed by proteolytic cleavage.") +AnnotationAssertion(Annotation( "PRO:DNx") "A pro-interleukin-16 that has been processed by proteolytic cleavage.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "IL16/ClvPrd") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000018435") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "interleukin-16 proteolytic cleavage product") +AnnotationAssertion(rdfs:label "pro-interleukin-16 proteolytic cleavage product") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -2115,26 +2114,26 @@ EquivalentClasses( ObjectIntersecti SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (pancreatic prohormone, signal peptide removed form) +# Class: (pancreatic polypeptide prohormone, signal peptide removed form) -AnnotationAssertion(Annotation( "PRO:DNx") "A pancreatic prohormone that has had the signal peptide removed.") +AnnotationAssertion(Annotation( "PRO:DNx") "A pancreatic polypeptide prohormone that has had the signal peptide removed.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PPY/SigPep-") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021065") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "pancreatic prohormone, signal peptide removed form") +AnnotationAssertion(rdfs:label "pancreatic polypeptide prohormone, signal peptide removed form") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (pancreatic prohormone proteolytic cleavage product) +# Class: (pancreatic polypeptide prohormone proteolytic cleavage product) -AnnotationAssertion(Annotation( "PRO:DNx") "A pancreatic prohormone that has been processed by proteolytic cleavage.") +AnnotationAssertion(Annotation( "PRO:DNx") "A pancreatic polypeptide prohormone that has been processed by proteolytic cleavage.") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PPY/ClvPrd") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000021066") AnnotationAssertion(rdfs:comment "Category=modification.") -AnnotationAssertion(rdfs:label "pancreatic prohormone proteolytic cleavage product") +AnnotationAssertion(rdfs:label "pancreatic polypeptide prohormone proteolytic cleavage product") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -2332,7 +2331,6 @@ SubClassOf( (serpin) AnnotationAssertion(Annotation( "InterPro:IPR000215") Annotation( "PRO:CNA") "A protein that is primarily known as an irreversible serine protease inhibitor active against S1, S8 and C14 peptidases. There are both extra- and intra-cellular serpins, which are found in all groups of organisms with the notable exception of fungi. Serpin contains a copy of the Serpin (Pfam:PF00079) domain.") -AnnotationAssertion( "PANTHER:PTHR11461") AnnotationAssertion( "PIRSF:PIRSF001630") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000025875") @@ -2419,20 +2417,20 @@ AnnotationAssertion(rdfs:label "al AnnotationAssertion( ) SubClassOf( ) -# Class: (protein-containing material entity) - -AnnotationAssertion(Annotation( "PRO:DAN") "A material entity that minimally consists of a protein.") -AnnotationAssertion(Annotation( "PRO:DAN") "protein") -AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") -AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") -AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000050567") -AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566).") -AnnotationAssertion(rdfs:label "protein-containing material entity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +# Class: (protein-containing molecular entity) + +AnnotationAssertion(Annotation( "PRO:DAN") "A molecular entity that minimally consists of a protein.") +AnnotationAssertion(Annotation( "PRO:DAN") "protein") +AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") +AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") +AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000064867") +AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050565).") +AnnotationAssertion(rdfs:label "protein-containing molecular entity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sequence_feature) diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl index 17800339..ece943c1 100644 --- a/src/ontology/imports/ro_import.owl +++ b/src/ontology/imports/ro_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2025-01-14") +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/uberon_import.owl b/src/ontology/imports/uberon_import.owl index a5b5e7b4..8879e8e7 100644 --- a/src/ontology/imports/uberon_import.owl +++ b/src/ontology/imports/uberon_import.owl @@ -7,7 +7,7 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) Annotation( ) Annotation( ) @@ -36,10 +36,17 @@ Annotation( ) Annotation( ) Annotation( ) -Annotation( ) +Annotation( ) Annotation( ) Annotation( ) Annotation( ) +Annotation( "http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop"^^xsd:anyURI) +Annotation( "http://wiki.phenotypercn.org/wiki/August_2012_Notes"^^xsd:anyURI) +Annotation( "https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit"^^xsd:anyURI) +Annotation( "https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit"^^xsd:anyURI) +Annotation( "https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit"^^xsd:anyURI) +Annotation( "https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#"^^xsd:anyURI) +Annotation( "https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0"^^xsd:anyURI) Annotation( "ISBN:0030229073 Invertebrate Zoology, Barnes") Annotation( "ISBN:0073040584 Vertebrates, Kardong") Annotation( "ISBN:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis") @@ -61,14 +68,7 @@ Annotation( "PMID:16417468 Forgotten and Annotation( "aggregates AAO from 13:04:2012") Annotation( "aggregates TAO from 09:08:2012") Annotation( "aggregates VSAO from 16:07:2012") -Annotation( "http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop"^^xsd:anyURI) -Annotation( "http://wiki.phenotypercn.org/wiki/August_2012_Notes"^^xsd:anyURI) -Annotation( "https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit"^^xsd:anyURI) -Annotation( "https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit"^^xsd:anyURI) -Annotation( "https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit"^^xsd:anyURI) -Annotation( "https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#"^^xsd:anyURI) -Annotation( "https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0"^^xsd:anyURI) -Annotation(owl:versionInfo "2025-01-14") +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class()) @@ -960,6 +960,19 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1024,14 +1037,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1161,7 +1171,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1215,7 +1224,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1767,6 +1775,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1792,6 +1803,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2115,6 +2127,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2197,7 +2210,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2217,6 +2229,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2253,6 +2266,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2262,12 +2276,33 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3020,6 +3055,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4431,6 +4468,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4514,6 +4552,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4966,6 +5005,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5649,6 +5689,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6126,6 +6167,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6884,6 +6926,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7529,11 +7572,15 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8811,6 +8858,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9363,6 +9411,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9677,11 +9727,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9826,7 +9875,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10226,6 +10274,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12808,6 +12857,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -15273,6 +15325,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -15519,6 +15572,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -16651,6 +16710,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -16900,12 +16960,15 @@ Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) +Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -17268,8 +17331,8 @@ We don't have definitions of 'meaning' or 'expression' or 'property'. For 'refer Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with."@en) -AnnotationAssertion(rdfs:label "definition") AnnotationAssertion(rdfs:label "definition"@en) +AnnotationAssertion(rdfs:label "definition") # Annotation Property: (editor note) @@ -17279,8 +17342,8 @@ AnnotationAssertion( "editor_note") AnnotationAssertion( "true"^^xsd:boolean) AnnotationAssertion( "editor_note") -AnnotationAssertion(rdfs:label "editor note") AnnotationAssertion(rdfs:label "editor note"@en) +AnnotationAssertion(rdfs:label "editor note") # Annotation Property: (has ontology root term) @@ -17290,15 +17353,15 @@ AnnotationAssertion( "has_ontology_root_term") AnnotationAssertion( "true"^^xsd:boolean) AnnotationAssertion( "has_ontology_root_term") -AnnotationAssertion(rdfs:label "has ontology root term") AnnotationAssertion(rdfs:label "has ontology root term"@en) +AnnotationAssertion(rdfs:label "has ontology root term") # Annotation Property: (term replaced by) AnnotationAssertion( "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en) AnnotationAssertion(rdfs:comment "Add as annotation triples in the granting ontology"@en) -AnnotationAssertion(rdfs:label "term replaced by") AnnotationAssertion(rdfs:label "term replaced by"@en) +AnnotationAssertion(rdfs:label "term replaced by") # Annotation Property: () @@ -17798,7 +17861,7 @@ AnnotationAssertion(rdfs:label "has_broad_synonym") AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") -# Annotation Property: (database_cross_reference) +# Annotation Property: (has cross-reference) AnnotationAssertion( "disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) \"NCIT:C41009\"^^xsd:string") AnnotationAssertion( "An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.") @@ -17807,7 +17870,7 @@ AnnotationAssertion( "database_cross_reference") AnnotationAssertion(rdfs:label "has cross-reference") -# Annotation Property: (has_exact_synonym) +# Annotation Property: (has exact synonym) AnnotationAssertion( "An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.") AnnotationAssertion( "https://github.com/information-artifact-ontology/ontology-metadata/issues/20") @@ -17882,12 +17945,12 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "part_of") -AnnotationAssertion(rdfs:label "part of") AnnotationAssertion(rdfs:label "part of"@en) +AnnotationAssertion(rdfs:label "part of") AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion(rdfs:seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Part_of"^^xsd:anyURI) +AnnotationAssertion(rdfs:seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of") SubObjectPropertyOf( ) InverseObjectProperties( ) TransitiveObjectProperty() @@ -17911,8 +17974,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "has_part") -AnnotationAssertion(rdfs:label "has part") AnnotationAssertion(rdfs:label "has part"@en) +AnnotationAssertion(rdfs:label "has part") SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -17925,8 +17988,8 @@ AnnotationAssertion( "preceded_by") AnnotationAssertion( ) AnnotationAssertion( "preceded_by") -AnnotationAssertion(rdfs:label "preceded by") AnnotationAssertion(rdfs:label "preceded by"@en) +AnnotationAssertion(rdfs:label "preceded by") SubObjectPropertyOf( ) InverseObjectProperties( ) TransitiveObjectProperty() @@ -17941,8 +18004,8 @@ AnnotationAssertion( "precedes") AnnotationAssertion( ) AnnotationAssertion( "precedes") -AnnotationAssertion(rdfs:label "precedes") AnnotationAssertion(rdfs:label "precedes"@en) +AnnotationAssertion(rdfs:label "precedes") SubObjectPropertyOf( ) TransitiveObjectProperty() ObjectPropertyDomain( ) @@ -17969,8 +18032,8 @@ AnnotationAssertion( "contains_process") AnnotationAssertion( "contains_process") AnnotationAssertion(rdfs:comment "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant") -AnnotationAssertion(rdfs:label "contains process") AnnotationAssertion(rdfs:label "contains process"@en) +AnnotationAssertion(rdfs:label "contains process") # Object Property: (anterior to) @@ -18348,8 +18411,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "participates_in") AnnotationAssertion( "participates_in") -AnnotationAssertion(rdfs:label "participates in") AnnotationAssertion(rdfs:label "participates in"@en) +AnnotationAssertion(rdfs:label "participates in") InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -18394,8 +18457,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "has_quality") AnnotationAssertion( "has_quality") -AnnotationAssertion(rdfs:label "has quality") AnnotationAssertion(rdfs:label "has quality"@en) +AnnotationAssertion(rdfs:label "has quality") SubObjectPropertyOf( ) ObjectPropertyRange( ) @@ -18419,8 +18482,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "location_of") AnnotationAssertion( "location_of") -AnnotationAssertion(rdfs:label "location of") AnnotationAssertion(rdfs:label "location of"@en) +AnnotationAssertion(rdfs:label "location of") InverseObjectProperties( ) TransitiveObjectProperty() @@ -18436,8 +18499,8 @@ AnnotationAssertion( "located_in") AnnotationAssertion( ) AnnotationAssertion( "located_in") -AnnotationAssertion(rdfs:label "located in") AnnotationAssertion(rdfs:label "located in"@en) +AnnotationAssertion(rdfs:label "located in") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Located_in"^^xsd:anyURI) TransitiveObjectProperty() ObjectPropertyDomain(Annotation( "This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.") ) @@ -18465,8 +18528,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "has_boundary") AnnotationAssertion( "has_boundary") -AnnotationAssertion(rdfs:label "has 2D boundary") AnnotationAssertion(rdfs:label "has 2D boundary"@en) +AnnotationAssertion(rdfs:label "has 2D boundary") SubObjectPropertyOf( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -18477,8 +18540,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "innervated_by") AnnotationAssertion( "innervated_by") -AnnotationAssertion(rdfs:label "innervated_by") AnnotationAssertion(rdfs:label "innervated_by"@en) +AnnotationAssertion(rdfs:label "innervated_by") InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -18500,8 +18563,8 @@ AnnotationAssertion( ) AnnotationAssertion( "bounding_layer_of") AnnotationAssertion(rdfs:comment "A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.") -AnnotationAssertion(rdfs:label "bounding layer of") AnnotationAssertion(rdfs:label "bounding layer of"@en) +AnnotationAssertion(rdfs:label "bounding layer of") SubObjectPropertyOf( ) ObjectPropertyDomain( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectPropertyRange( ) @@ -18530,8 +18593,8 @@ AnnotationAssertion( ) AnnotationAssertion( "simultaneous_with") AnnotationAssertion(rdfs:comment "t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)"@en) -AnnotationAssertion(rdfs:label "simultaneous with") AnnotationAssertion(rdfs:label "simultaneous with"@en) +AnnotationAssertion(rdfs:label "simultaneous with") SubObjectPropertyOf( ) SymmetricObjectProperty() TransitiveObjectProperty() @@ -18551,8 +18614,8 @@ AnnotationAssertion( "immediately_preceded_by") AnnotationAssertion( "immediately_preceded_by") AnnotationAssertion(rdfs:comment "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)"@en) -AnnotationAssertion(rdfs:label "immediately preceded by") AnnotationAssertion(rdfs:label "immediately preceded by"@en) +AnnotationAssertion(rdfs:label "immediately preceded by") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -18578,8 +18641,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "synapsed_by") AnnotationAssertion( "synapsed_by") -AnnotationAssertion(rdfs:label "synapsed by") AnnotationAssertion(rdfs:label "synapsed by"@en) +AnnotationAssertion(rdfs:label "synapsed by") SubObjectPropertyOf( ) InverseObjectProperties( ) ObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( ))) @@ -18621,8 +18684,8 @@ AnnotationAssertion( ) AnnotationAssertion( "overlaps") AnnotationAssertion(rdfs:comment "\"(forall (x y) (iff (overlaps x y) (exists (z) (and (part of z x) (part of z y)))))\" CLIF []") -AnnotationAssertion(rdfs:label "overlaps") AnnotationAssertion(rdfs:label "overlaps"@en) +AnnotationAssertion(rdfs:label "overlaps") SubObjectPropertyOf( ) SymmetricObjectProperty() @@ -18635,8 +18698,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "innervates") AnnotationAssertion( "innervates") -AnnotationAssertion(rdfs:label "innervates") AnnotationAssertion(rdfs:label "innervates"@en) +AnnotationAssertion(rdfs:label "innervates") ObjectPropertyDomain( ) # Object Property: (continuous with) @@ -18647,8 +18710,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "continuous_with") AnnotationAssertion( "continuous_with") -AnnotationAssertion(rdfs:label "continuous with") AnnotationAssertion(rdfs:label "continuous with"@en) +AnnotationAssertion(rdfs:label "continuous with") AnnotationAssertion(rdfs:seeAlso "FMA:85972") SubObjectPropertyOf( ) SymmetricObjectProperty() @@ -18738,8 +18801,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "connected_to") AnnotationAssertion( "connected_to") -AnnotationAssertion(rdfs:label "connected to") AnnotationAssertion(rdfs:label "connected to"@en) +AnnotationAssertion(rdfs:label "connected to") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -18755,8 +18818,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "connects") AnnotationAssertion( "connects") -AnnotationAssertion(rdfs:label "connects") AnnotationAssertion(rdfs:label "connects"@en) +AnnotationAssertion(rdfs:label "connects") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -18770,8 +18833,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "attaches_to_part_of") AnnotationAssertion( "attaches_to_part_of") -AnnotationAssertion(rdfs:label "attached to part of") AnnotationAssertion(rdfs:label "attached to part of"@en) +AnnotationAssertion(rdfs:label "attached to part of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -18785,10 +18848,9 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "supplies") AnnotationAssertion( "supplies") -AnnotationAssertion(rdfs:label "supplies") AnnotationAssertion(rdfs:label "supplies"@en) +AnnotationAssertion(rdfs:label "supplies") SubObjectPropertyOf( ) -ObjectPropertyDomain( ) # Object Property: (drains) @@ -18798,10 +18860,9 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "drains") AnnotationAssertion( "drains") -AnnotationAssertion(rdfs:label "drains") AnnotationAssertion(rdfs:label "drains"@en) +AnnotationAssertion(rdfs:label "drains") SubObjectPropertyOf( ) -ObjectPropertyDomain( ) # Object Property: (has component) @@ -18813,8 +18874,8 @@ AnnotationAssertion( "has_component") AnnotationAssertion( ) AnnotationAssertion( "has_component") -AnnotationAssertion(rdfs:label "has component") AnnotationAssertion(rdfs:label "has component"@en) +AnnotationAssertion(rdfs:label "has component") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -18826,8 +18887,8 @@ AnnotationAssertion( "develops_from") AnnotationAssertion( "develops_from") AnnotationAssertion(rdfs:comment "This is the transitive form of the develops from relation") -AnnotationAssertion(rdfs:label "develops from") AnnotationAssertion(rdfs:label "develops from"@en) +AnnotationAssertion(rdfs:label "develops from") SubObjectPropertyOf( ) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -18843,8 +18904,8 @@ AnnotationAssertion( "develops_into") AnnotationAssertion( ) AnnotationAssertion( "develops_into") -AnnotationAssertion(rdfs:label "develops into") AnnotationAssertion(rdfs:label "develops into"@en) +AnnotationAssertion(rdfs:label "develops into") SubObjectPropertyOf( ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -18870,8 +18931,8 @@ AnnotationAssertion( "directly_develops_from") AnnotationAssertion( "directly_develops_from") AnnotationAssertion(rdfs:comment "TODO - add child relations from DOS") -AnnotationAssertion(rdfs:label "directly develops from") AnnotationAssertion(rdfs:label "directly develops from"@en) +AnnotationAssertion(rdfs:label "directly develops from") SubObjectPropertyOf( ) InverseObjectProperties( ) ObjectPropertyDomain( ObjectUnionOf( )) @@ -18933,8 +18994,8 @@ AnnotationAssertion( "capable_of") AnnotationAssertion( ) AnnotationAssertion( "capable_of") -AnnotationAssertion(rdfs:label "capable of") AnnotationAssertion(rdfs:label "capable of"@en) +AnnotationAssertion(rdfs:label "capable of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -18946,8 +19007,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "capable_of_part_of") AnnotationAssertion( "capable_of_part_of") -AnnotationAssertion(rdfs:label "capable of part of") AnnotationAssertion(rdfs:label "capable of part of"@en) +AnnotationAssertion(rdfs:label "capable of part of") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -18959,8 +19020,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "surrounded_by") AnnotationAssertion( "surrounded_by") -AnnotationAssertion(rdfs:label "surrounded by") AnnotationAssertion(rdfs:label "surrounded by"@en) +AnnotationAssertion(rdfs:label "surrounded by") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -18980,8 +19041,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "adjacent_to") -AnnotationAssertion(rdfs:label "adjacent to") AnnotationAssertion(rdfs:label "adjacent to"@en) +AnnotationAssertion(rdfs:label "adjacent to") SubObjectPropertyOf( ) SymmetricObjectProperty() ObjectPropertyDomain( ) @@ -18995,8 +19056,8 @@ AnnotationAssertion( "surrounds") AnnotationAssertion( ) AnnotationAssertion( "surrounds") -AnnotationAssertion(rdfs:label "surrounds") AnnotationAssertion(rdfs:label "surrounds"@en) +AnnotationAssertion(rdfs:label "surrounds") SubObjectPropertyOf( ) # Object Property: (temporally related to) @@ -19016,8 +19077,8 @@ AnnotationAssertion( "starts") AnnotationAssertion( ) AnnotationAssertion( "starts") -AnnotationAssertion(rdfs:label "starts") AnnotationAssertion(rdfs:label "starts"@en) +AnnotationAssertion(rdfs:label "starts") SubObjectPropertyOf( ) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -19031,8 +19092,8 @@ AnnotationAssertion( "starts_with") AnnotationAssertion( ) AnnotationAssertion( "starts_with") -AnnotationAssertion(rdfs:label "starts with") AnnotationAssertion(rdfs:label "starts with"@en) +AnnotationAssertion(rdfs:label "starts with") SubObjectPropertyOf( ) SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -19044,8 +19105,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "develops_from_part_of") AnnotationAssertion( "develops_from_part_of") -AnnotationAssertion(rdfs:label "develops from part of") AnnotationAssertion(rdfs:label "develops from part of"@en) +AnnotationAssertion(rdfs:label "develops from part of") SubObjectPropertyOf( ) # Object Property: (develops in) @@ -19055,8 +19116,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "develops_in") AnnotationAssertion( "develops_in") -AnnotationAssertion(rdfs:label "develops in") AnnotationAssertion(rdfs:label "develops in"@en) +AnnotationAssertion(rdfs:label "develops in") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -19068,8 +19129,8 @@ AnnotationAssertion( "ends") AnnotationAssertion( ) AnnotationAssertion( "ends") -AnnotationAssertion(rdfs:label "ends") AnnotationAssertion(rdfs:label "ends"@en) +AnnotationAssertion(rdfs:label "ends") SubObjectPropertyOf( ) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -19082,8 +19143,8 @@ AnnotationAssertion( "ends_with") AnnotationAssertion( ) AnnotationAssertion( "ends_with") -AnnotationAssertion(rdfs:label "ends with") AnnotationAssertion(rdfs:label "ends with"@en) +AnnotationAssertion(rdfs:label "ends with") SubObjectPropertyOf( ) SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -19160,8 +19221,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "has_developmental_contribution_from") AnnotationAssertion( "has_developmental_contribution_from") -AnnotationAssertion(rdfs:label "has developmental contribution from") AnnotationAssertion(rdfs:label "has developmental contribution from"@en) +AnnotationAssertion(rdfs:label "has developmental contribution from") SubObjectPropertyOf( ) InverseObjectProperties( ) ObjectPropertyDomain( ) @@ -19183,8 +19244,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "developmentally_induced_by") AnnotationAssertion( "developmentally_induced_by") -AnnotationAssertion(rdfs:label "developmentally induced by") AnnotationAssertion(rdfs:label "developmentally induced by"@en) +AnnotationAssertion(rdfs:label "developmentally induced by") SubObjectPropertyOf( ) InverseObjectProperties( ) ObjectPropertyDomain( ) @@ -19236,8 +19297,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "developmentally_replaces") AnnotationAssertion( "developmentally_replaces") -AnnotationAssertion(rdfs:label "developmentally replaces") AnnotationAssertion(rdfs:label "developmentally replaces"@en) +AnnotationAssertion(rdfs:label "developmentally replaces") SubObjectPropertyOf( ) # Object Property: (developmentally succeeded by) @@ -19281,8 +19342,8 @@ SubObjectPropertyOf( (results in formation of anatomical entity) -AnnotationAssertion( "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.") AnnotationAssertion( "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)"@en) +AnnotationAssertion( "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -19293,8 +19354,8 @@ InverseObjectProperties( (results in morphogenesis of) -AnnotationAssertion( "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape.") AnnotationAssertion( "tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)"@en) +AnnotationAssertion( "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape.") AnnotationAssertion( "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state.") AnnotationAssertion( ) AnnotationAssertion( ) @@ -19305,8 +19366,8 @@ SubObjectPropertyOf( (results in maturation of) -AnnotationAssertion( " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process") AnnotationAssertion( "bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)"@en) +AnnotationAssertion( " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process") AnnotationAssertion( "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity.") AnnotationAssertion( ) AnnotationAssertion( ) @@ -19378,8 +19439,8 @@ AnnotationAssertion( "confers_advantage_in") AnnotationAssertion( ) AnnotationAssertion( "confers_advantage_in") -AnnotationAssertion(rdfs:label "confers advantage in") AnnotationAssertion(rdfs:label "confers advantage in"@en) +AnnotationAssertion(rdfs:label "confers advantage in") SubObjectPropertyOf( ) # Object Property: (mereotopologically related to) @@ -19402,8 +19463,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "functionally_related_to") AnnotationAssertion( "functionally_related_to") -AnnotationAssertion(rdfs:label "functionally related to") AnnotationAssertion(rdfs:label "functionally related to"@en) +AnnotationAssertion(rdfs:label "functionally related to") # Object Property: (genomically related to) @@ -19514,8 +19575,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "has_member") AnnotationAssertion( "has_member") -AnnotationAssertion(rdfs:label "has member") AnnotationAssertion(rdfs:label "has member"@en) +AnnotationAssertion(rdfs:label "has member") SubObjectPropertyOf( ) # Object Property: (input of) @@ -19527,8 +19588,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "input_of") -AnnotationAssertion(rdfs:label "input of") AnnotationAssertion(rdfs:label "input of"@en) +AnnotationAssertion(rdfs:label "input of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -19541,8 +19602,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "output_of") -AnnotationAssertion(rdfs:label "output of") AnnotationAssertion(rdfs:label "output of"@en) +AnnotationAssertion(rdfs:label "output of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -19559,8 +19620,8 @@ AnnotationAssertion( "attaches_to") AnnotationAssertion( ) AnnotationAssertion( "attaches_to") -AnnotationAssertion(rdfs:label "attached to") AnnotationAssertion(rdfs:label "attached to"@en) +AnnotationAssertion(rdfs:label "attached to") SubObjectPropertyOf( ) SubObjectPropertyOf( ) SymmetricObjectProperty() @@ -19572,8 +19633,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "has_muscle_origin") AnnotationAssertion( "has_muscle_origin") -AnnotationAssertion(rdfs:label "has muscle origin") AnnotationAssertion(rdfs:label "has muscle origin"@en) +AnnotationAssertion(rdfs:label "has muscle origin") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -19586,8 +19647,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "has_muscle_insertion") AnnotationAssertion( "has_muscle_insertion") -AnnotationAssertion(rdfs:label "has muscle insertion") AnnotationAssertion(rdfs:label "has muscle insertion"@en) +AnnotationAssertion(rdfs:label "has muscle insertion") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -19603,8 +19664,8 @@ AnnotationAssertion( "has_fused_element") AnnotationAssertion( "has_fused_element") AnnotationAssertion(rdfs:comment "A has_fused_element B does not imply that A has_part some B: rather than A has_part some B', where B' that has some evolutionary relationship to B."@en) -AnnotationAssertion(rdfs:label "derived from ancestral fusion of") AnnotationAssertion(rdfs:label "derived from ancestral fusion of"@en) +AnnotationAssertion(rdfs:label "derived from ancestral fusion of") SubObjectPropertyOf( ) # Object Property: (in branching relationship with) @@ -19630,8 +19691,8 @@ AnnotationAssertion( "tributary_of") AnnotationAssertion( ) AnnotationAssertion( "tributary_of") -AnnotationAssertion(rdfs:label "tributary of") AnnotationAssertion(rdfs:label "tributary of"@en) +AnnotationAssertion(rdfs:label "tributary of") AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso "http://en.wikipedia.org/wiki/Tributary"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -19654,8 +19715,8 @@ AnnotationAssertion( "branching_part_of") AnnotationAssertion( ) AnnotationAssertion( "branching_part_of") -AnnotationAssertion(rdfs:label "branching part of") AnnotationAssertion(rdfs:label "branching part of"@en) +AnnotationAssertion(rdfs:label "branching part of") AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso "FMA:85994") SubObjectPropertyOf( ) @@ -19678,8 +19739,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "has_potential_to_developmentally_contribute_to") AnnotationAssertion( "has_potential_to_developmentally_contribute_to") -AnnotationAssertion(rdfs:label "has potential to developmentally contribute to") AnnotationAssertion(rdfs:label "has potential to developmentally contribute to"@en) +AnnotationAssertion(rdfs:label "has potential to developmentally contribute to") SubObjectPropertyOf( ) # Object Property: (has potential to developmentally induce) @@ -19695,8 +19756,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "has_potential_to_develop_into") AnnotationAssertion( "has_potential_to_develop_into") -AnnotationAssertion(rdfs:label "has potential to develop into") AnnotationAssertion(rdfs:label "has potential to develop into"@en) +AnnotationAssertion(rdfs:label "has potential to develop into") SubObjectPropertyOf( ) # Object Property: (has potential to directly develop into) @@ -20158,8 +20219,8 @@ AnnotationAssertion( ) AnnotationAssertion( "produces") AnnotationAssertion(rdfs:comment "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.") -AnnotationAssertion(rdfs:label "produces") AnnotationAssertion(rdfs:label "produces"@en) +AnnotationAssertion(rdfs:label "produces") InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -20172,8 +20233,8 @@ AnnotationAssertion( "produced_by") AnnotationAssertion( ) AnnotationAssertion( "produced_by") -AnnotationAssertion(rdfs:label "produced by") AnnotationAssertion(rdfs:label "produced by"@en) +AnnotationAssertion(rdfs:label "produced by") ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -20243,6 +20304,19 @@ AnnotationAssertion( "results in fusion of"@en) SubObjectPropertyOf( ) +# Object Property: (has characterizing marker set) + +AnnotationAssertion( "'Lamp5-like Egln3_1 primary motor cortex GABAergic interneuron (Mus musculus)' subClass_of: has_characterizing_marker_set some 'NS forest marker set of Lamp5-like Egln3_1 MOp (Mouse).'; NS forest marker set of Lamp5-like Egln3_1 SubClass_of: ('has part' some 'Mouse Fbn2') and ('has part' some 'Mouse Chrna7') and ('has part' some 'Mouse Fam19a1').") +AnnotationAssertion( "transcriptomically defined cell type X subClass_of: (has_characterizing_marker_set some S1); S1 has_part some gene 1, S1 has_part some gene 2, S1 has_part some gene 3.") +AnnotationAssertion( "A relation that applies between a cell type and a set of markers that can be used to uniquely identify that cell type.") +AnnotationAssertion( "C has_characterizing_marker_set y iff: C is a cell type and y is a collection of genes or proteins whose expression is sufficient to distinguish cell type C from most or all other cell types.") +AnnotationAssertion( "This relation is not meant for cases where set of genes/proteins are only useful as markers in some specific context - e.g. in some specific location. In these cases it is recommended to make a more specific cell class restricted to the relevant context.") +AnnotationAssertion( ) +AnnotationAssertion( "has marker gene combination") +AnnotationAssertion( "has marker signature set") +AnnotationAssertion(rdfs:label "has characterizing marker set") +ObjectPropertyDomain( ) + # Object Property: (has cross section) AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.") @@ -20296,6 +20370,36 @@ SubObjectPropertyOf( ) ObjectPropertyRange( ) +# Object Property: (vessel supplies blood to) + +AnnotationAssertion( "brachial artery vessel supplies blood to brachialis muscle") +AnnotationAssertion( "x vessel supplies blood to y if and only if x is a vessel that supplies blood directly or indirectly to an anatomical structure y.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-02-01T10:09:22Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0020101") +AnnotationAssertion( "uberon") +AnnotationAssertion( "vessel_supplies_blood_to") +AnnotationAssertion( "vessel_supplies_blood_to") +AnnotationAssertion(rdfs:label "vessel supplies blood to") +SubObjectPropertyOf( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) + +# Object Property: (vessel drains blood from) + +AnnotationAssertion( "cystic vein vessel drains blood from gallbladder") +AnnotationAssertion( "x vessel drains blood from y if and only if x is a vessel that drains blood directly or indirectly from an anatomical structure y.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-02-01T10:09:41Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0020102") +AnnotationAssertion( "uberon") +AnnotationAssertion( "vessel_drains_blood_from") +AnnotationAssertion( "vessel_drains_blood_from") +AnnotationAssertion(rdfs:label "vessel drains blood from") +SubObjectPropertyOf( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) + # Object Property: (results in changes to anatomical or cellular structure) AnnotationAssertion( "p has anatomical participant c iff p has participant c, and c is an anatomical entity") @@ -34935,6 +35039,7 @@ AnnotationAssertion(Annotation( "FMA:72290") AnnotationAssertion( "MA:0002765") AnnotationAssertion( "VHOG:0001531") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000015") AnnotationAssertion( "ncithesaurus:Spermatogenic_Cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "male germ cell") @@ -34984,6 +35089,7 @@ AnnotationAssertion( "CALOHA:TS-0949") AnnotationAssertion( "FMA:67338") AnnotationAssertion( "WBbt:0006798") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000019") AnnotationAssertion( "sperm cell") AnnotationAssertion( "spermatozoid") AnnotationAssertion( "spermatozoon") @@ -35094,6 +35200,7 @@ SubClassOf( ObjectSomeValuesFrom( (glioblast) +AnnotationAssertion(Annotation( "PMID:37824650") Annotation( "Wikipedia:Glioblast") "A non-terminally differentiated cell that develops form the neuroectoderm. Glioblast has the potential to differentiate into various types of glial cells, including astrocytes and oligodendrocytes.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "glioblast") SubClassOf( ) @@ -35231,7 +35338,6 @@ AnnotationAssertion(rdfs:label "mono EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -35349,6 +35455,7 @@ AnnotationAssertion( "CALOHA:TS-0650") AnnotationAssertion( "FMA:70335") AnnotationAssertion( "VHOG:0001529") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "myoblast") SubClassOf( ) @@ -35366,8 +35473,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative.") AnnotationAssertion(rdfs:label "fibroblast") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (chondroblast) @@ -35391,8 +35497,8 @@ AnnotationAssertion( "non-encoded relationship from VSAO produces VSAO:0000066") AnnotationAssertion(rdfs:label "ameloblast") SubClassOf( ) -SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -35442,7 +35548,6 @@ AnnotationAssertion( "ciliated cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (ependymal cell) @@ -35455,7 +35560,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ependymal cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -35604,6 +35709,7 @@ AnnotationAssertion(Annotation( "BTO:0000028") AnnotationAssertion( "pancreas epithelial cell") AnnotationAssertion( "pancreatic epithelial cell") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of pancreas") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -35640,6 +35746,7 @@ AnnotationAssertion( "CALOHA:TS-0721") AnnotationAssertion( "FMA:66781") AnnotationAssertion( "MESH:D010010") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000092") AnnotationAssertion( "chondroclast") AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid.") @@ -35648,7 +35755,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -35678,7 +35784,6 @@ AnnotationAssertion(rdfs:label "gran EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -35716,10 +35821,11 @@ AnnotationAssertion( "BTO:0003811") AnnotationAssertion( "FMA:67313") AnnotationAssertion( "WBbt:0005113") +AnnotationAssertion( "CNS interneuron") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "interneuron") -SubClassOf( ) +SubClassOf( ) # Class: (motor neuron) @@ -35742,33 +35848,13 @@ AnnotationAssertion( "FMA:84649") AnnotationAssertion( "MESH:D011984") AnnotationAssertion( "WBbt:0005759") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sensory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (bipolar neuron) - -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0444009442") "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body.") -AnnotationAssertion( "FMA:67282") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "bipolar neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (multipolar neuron) - -AnnotationAssertion(Annotation( "FMA:67287") Annotation( "GOC:tfm") "A neuron with three or more neurites, usually an axon and multiple dendrites.") -AnnotationAssertion( "FMA:67287") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "multipolar neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (autonomic neuron) AnnotationAssertion(Annotation( "GOC:tfm") "A neuron whose cell body is within an autonomic ganglion.") @@ -35809,6 +35895,7 @@ SubClassOf( ObjectSomeValuesFrom( (surface ectodermal cell) AnnotationAssertion( "FMA:72552") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000114") AnnotationAssertion( "cell of surface ectoderm") AnnotationAssertion( "surface ectoderm cell") AnnotationAssertion( ) @@ -35832,14 +35919,6 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (CNS neuron (sensu Vertebrata)) - -AnnotationAssertion(rdfs:label "CNS neuron (sensu Vertebrata)") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (basket cell) AnnotationAssertion(Annotation( "WikipediaVersioned:Basket_cell&oldid=951703880") "Basket cells are inhibitory GABAergic interneurons of the brain. In general, dendrites of basket cells are free branching and contain smooth spines. Axons are highly branched. The branched axonal arborizations give rise to basket-like structures that surround the soma of the target cell. Basket cells form axo-somatic synapses, meaning their synapses target somas of other cells.") @@ -35847,7 +35926,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "basket cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -35870,7 +35948,7 @@ AnnotationAssertion(Annotation( "BTO:0003393") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "granule cell") -SubClassOf( ) +SubClassOf( ) # Class: (Purkinje cell) @@ -35886,8 +35964,6 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(Annotation( "PMID:17535929") Annotation( "PMID:27215193") Annotation( "PMID:37426070") Annotation( "https://doi.org/10.1016/j.stem.2023.11.013") rdfs:comment "Neurodegenerative disorders affecting Purkinje cells disrupt motor functions. Some of the neurodegenerative disorders that causes loss and degeration of Purkinje cells are Spinocerebellar ataxias (SCAs) (Josef P Kapfhammer and Etsuko Shimobayashi 2023), Friedreich's ataxia (FRDA) (Kevin C Kemp et al., 2016), Fetal alcohol syndrome (Laurent Servais et al., 2016), Dandy-Walker malformation (Alexander Atamian et al., 2024).") AnnotationAssertion(rdfs:label "Purkinje cell") -SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -35898,9 +35974,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stellate neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuron associated cell (sensu Vertebrata)) @@ -36105,6 +36180,7 @@ AnnotationAssertion( "FMA:70545") AnnotationAssertion( "MESH:D008544") AnnotationAssertion( "VHOG:0001679") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000148") AnnotationAssertion( "melanophore") AnnotationAssertion( ) AnnotationAssertion( ) @@ -36123,16 +36199,17 @@ AnnotationAssertion( "visual pigment cell") SubClassOf( ) -# Class: (glandular epithelial cell) +# Class: (glandular secretory epithelial cell) -AnnotationAssertion(Annotation( "GOC:tfm") "A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ORCID:0000-0002-7073-9172") "An epithelial cell, located in a gland, that is specialised for the synthesis and secretion of specific biomolecules, such as hormones, or mucous.") AnnotationAssertion( "CALOHA:TS-2085") AnnotationAssertion( "FMA:86494") +AnnotationAssertion( "glandular epithelial cell") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "glandular epithelial cell") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +AnnotationAssertion(rdfs:label "glandular secretory epithelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (secretory cell) @@ -36175,16 +36252,18 @@ SubClassOf( ObjectSomeValuesFrom( (peptic cell) -AnnotationAssertion(Annotation( "GOC:tfm") "A cell that is usually basal in position, cuboidal with round nucleus, short microvilli, secretes pepsinogen.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:21907708") Annotation( "PMID:30571046") Annotation( "Wikipedia:Gastric_chief_cell") "An epithelial cell of the stomach that is part of the fundic gastric gland. This cell is characterized by a basally located nucleus, abundant rough endoplasmic reticulum, and large apical secretory granules. It produces and secretes pepsinogen, the inactive precursor of the digestive enzyme pepsin.") AnnotationAssertion( "FMA:62902") AnnotationAssertion( "chief cell of stomach") -AnnotationAssertion( "gastric chief cell") +AnnotationAssertion(Annotation( "Wikipedia:Chief_cell") "gastric chief cell") AnnotationAssertion( "pepsinogen secreting cell") -AnnotationAssertion( "zymogenic cell") +AnnotationAssertion(Annotation( "Wikipedia:Chief_cell") "zymogenic cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peptic cell") +SubClassOf( ) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (surfactant secreting cell) @@ -36207,6 +36286,7 @@ AnnotationAssertion(rdfs:label "club SubClassOf( ) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (seromucus secreting cell) @@ -36225,21 +36305,26 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "goblet cell") AnnotationAssertion(Annotation( ) Annotation( ) "https://upload.wikimedia.org/wikipedia/commons/thumb/c/c4/404_Goblet_Cell_new.jpg/800px-404_Goblet_Cell_new.jpg") -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (parietal cell) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") "A large, oval stomach epithelial cell with a central nucleus; source of gastric acid. Secretes HCl.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") Annotation( "PMID:31613538") Annotation( "PMID:31670611") "An epithelial cell of the stomach that is part of the fundic gastric gland. This cell is characterized by its pyramidal shape, abundant mitochondria, and a complex network of secretory canaliculi lined with microvilli. It secretes hydrochloric acid into the stomach lumen and produces intrinsic factor, essential for vitamin B12 absorption.") AnnotationAssertion( "BTO:0001780") AnnotationAssertion( "FMA:62901") -AnnotationAssertion( "oxyntic cell") +AnnotationAssertion(Annotation( "PMID:29263912") "gastric parietal cell") +AnnotationAssertion(Annotation( "Wikipedia:Parietal_cell") "oxyntic cell") AnnotationAssertion( ) +AnnotationAssertion(Annotation( "PMID:29263912") Annotation( "PMID:31613538") rdfs:comment "Parietal cells have dynamic, actin-supported microvilli that increase in number during active secretion, playing a crucial role in secreting hydrochloric acid and intrinsic factor. The structure and regulation of these microvilli are influenced by proteins such as ASAP3, which modulates Arf6 activity and actin assembly, thereby controlling microvilli formation and parietal cell function.") AnnotationAssertion(rdfs:label "parietal cell") +SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endocrine cell) @@ -36266,8 +36351,8 @@ AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000164") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteroendocrine cell") -SubClassOf( ) SubClassOf( ) +SubClassOf( ) # Class: (neuroendocrine cell) @@ -36287,6 +36372,7 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (chromaffin cell) @@ -36407,6 +36493,7 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (steroid hormone secreting cell) @@ -36534,6 +36621,7 @@ AnnotationAssertion( "BTO:0004392") AnnotationAssertion( "CALOHA:TS-2158") AnnotationAssertion( "FMA:9727") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000188") AnnotationAssertion( "skeletal muscle cell") AnnotationAssertion( ) AnnotationAssertion( ) @@ -36552,6 +36640,7 @@ AnnotationAssertion( "BTO:0004576") AnnotationAssertion( "CALOHA:TS-2159") AnnotationAssertion( "FMA:14072") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000192") AnnotationAssertion(Annotation( "PMID:9315361") "SMCs") AnnotationAssertion(Annotation( "MESH:D032389") "myocytes, smooth muscle") AnnotationAssertion( "smooth muscle fiber") @@ -36628,6 +36717,7 @@ AnnotationAssertion( "odorant receptor cell") AnnotationAssertion( "olfactory receptor neuron") AnnotationAssertion( "olfactory sensory neuron") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "olfactory receptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -36704,6 +36794,7 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (insulating cell) @@ -36719,6 +36810,7 @@ AnnotationAssertion( "CALOHA:TS-0898") AnnotationAssertion( "FMA:62121") AnnotationAssertion( "neurilemmal cell") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "myelinating Schwann cell") SubClassOf( ) SubClassOf( ) @@ -36739,6 +36831,7 @@ SubClassOf( ObjectSomeValuesFrom( "MESH:D004475") "A cell of the outer of the three germ layers of the embryo.") AnnotationAssertion( "FMA:72549") AnnotationAssertion( "ectoderm cell") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ectodermal cell") SubClassOf( ) SubClassOf( ) @@ -36748,6 +36841,7 @@ SubClassOf( ObjectSomeValuesFrom( "MESH:D008648") "A cell of the middle germ layer of the embryo.") AnnotationAssertion( "FMA:72554") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000222") AnnotationAssertion( "mesoblast") AnnotationAssertion( "mesoderm cell") AnnotationAssertion( ) @@ -36850,7 +36944,6 @@ AnnotationAssertion(Annotation( "BTO:0001044") AnnotationAssertion( "FMA:83806") AnnotationAssertion( "MESH:D010586") -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "phagocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -36973,7 +37066,6 @@ SubClassOf( "FBC:Autogenerated") "Any cell that in taxon some Eukaryota.") AnnotationAssertion( "MESH:D005057") -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "eukaryotic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -37021,6 +37113,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") Annotation( "ISBN:0721662544") "A mature sexual reproductive cell having a single set of unpaired chromosomes.") AnnotationAssertion( "CALOHA:TS-0395") AnnotationAssertion( "FMA:18649") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000300") AnnotationAssertion( "haploid nucleated cell") AnnotationAssertion( "haploid germ cell") AnnotationAssertion(rdfs:label "gamete") @@ -37090,26 +37183,30 @@ SubClassOf( "milk secreting cell") SubClassOf( ) -# Class: (sebum secreting cell) +# Class: (sebocyte) -AnnotationAssertion(Annotation( "MESH:D012629") "A cell secreting sebun, an oily substance secreted by sebaceous glands, composed of keratin, fat, and cellular debris.") +AnnotationAssertion(Annotation( "MESH:D012629") Annotation( "PMID:19944183") "An epithelial cell that is part of a sebaceous gland. This cell produces and secretes sebum, an oily, lipid-rich substance, through holocrine secretion where the entire cell ruptures to release its contents.") AnnotationAssertion( ) -AnnotationAssertion( "sebocyte") +AnnotationAssertion( "sebum secreting cell") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "sebum secreting cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +AnnotationAssertion(rdfs:label "sebocyte") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (mucus secreting cell) -AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any secretory cell that is capable of some mucus secretion.") +AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any cell that is capable of some mucus secretion.") AnnotationAssertion( "BTO:0003689") AnnotationAssertion( "mucous cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mucus secreting cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -37232,6 +37329,7 @@ SubClassOf( ObjectSomeValuesFrom( (extraembryonic cell) AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any cell that is part of some extraembryonic structure.") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "extraembryonic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -37242,6 +37340,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") Annotation( "MESH:D014327") Annotation( "PMID:37630754") Annotation( "doi:10.1007/978-3-030-84725-8") "An extraembryonic cell that develops from a trophectodermal cell. This cell is found in the outer layer of the blastocyst and can invade other structures in the uterus once the blastocyst implants into the uterine wall. A trophoblast cell is involved in the implantation of the embryo into the uterine wall, placental formation, remodelling of maternal vasculature in the uterus, nutrient and gas exchange, hormone production, and immune modulation to support fetal development.") AnnotationAssertion( "FMA:83028") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000351") AnnotationAssertion(Annotation( "doi:10.1007/978-3-030-84725-8") "trophoblastic cell") AnnotationAssertion(rdfs:label "trophoblast cell") SubClassOf(Annotation( "true") ) @@ -37288,6 +37387,7 @@ SubClassOf( (sphincter associated smooth muscle cell) AnnotationAssertion(Annotation( "GOC:cjm") "A smooth muscle cell that is part of a sphincter. A sphincter is a typically circular muscle that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning.") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000358") AnnotationAssertion(rdfs:label "sphincter associated smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) @@ -37297,6 +37397,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:dsd") Annotation( "GOC:tfm") "A smooth muscle cell associated with the vasculature.") AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000359") AnnotationAssertion( "VSMC") AnnotationAssertion( "vascular smooth muscle cell") AnnotationAssertion( ) @@ -37373,17 +37474,6 @@ EquivalentClasses( ObjectIntersection SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (CNS interneuron) - -AnnotationAssertion(Annotation( "doi:10.1016/B978-0-12-817424-1.00001-X") "An interneuron that has its cell body in a central nervous system.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Interneurons are commonly described as being only found in the central nervous system. However, in CL we define 'interneuron' more broadly as any neuron that is neither a motor neuron nor a sensory neuron, regardless of its location, so we need this term to refer strictly to interneurons of the central nervous system.") -AnnotationAssertion(rdfs:label "CNS interneuron") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (electrically signaling cell) AnnotationAssertion(Annotation( "FB:ma") "A cell that initiates an electrical signal and passes that signal to another cell.") @@ -37395,6 +37485,7 @@ SubClassOf( "FBC:Autogenerated") "Any male germ cell that has characteristic some haploid and is capable of some fertilization.") AnnotationAssertion( "BTO:0001277") AnnotationAssertion( "CALOHA:TS-0949") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000408") AnnotationAssertion(rdfs:label "male gamete") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) @@ -37404,7 +37495,7 @@ SubClassOf( ObjectSomeValuesFrom( (polyploid cell) -AnnotationAssertion(Annotation( "FB:ma") Annotation( "PMID:32646579") Annotation( "https://bio.libretexts.org/Bookshelves/Introductory_and_General_Biology/Biology_(Kimball)/07%3A_Cell_Division/7.04%3A_Polyploidy"^^xsd:anyURI) "A cell that contains more than two haploid sets of chromosomes.") +AnnotationAssertion(Annotation( "https://bio.libretexts.org/Bookshelves/Introductory_and_General_Biology/Biology_(Kimball)/07%3A_Cell_Division/7.04%3A_Polyploidy"^^xsd:anyURI) Annotation( "FB:ma") Annotation( "PMID:32646579") "A cell that contains more than two haploid sets of chromosomes.") AnnotationAssertion(rdfs:label "polyploid cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -37428,7 +37519,7 @@ SubClassOf( "GOC:tfm") Annotation( "PMID:19783135") "A cell involved in the elimination of metabolic and foreign toxins, and in maintaining the ionic, acid-base and water balance of biological fluids.") AnnotationAssertion( "WBbt:0005812") AnnotationAssertion(rdfs:label "excretory cell") -SubClassOf( ) +SubClassOf( ) # Class: (reticular cell) @@ -37489,8 +37580,9 @@ AnnotationAssertion( "parathyroid hormone secreting cell") AnnotationAssertion( "principal cell of parathyroid gland") AnnotationAssertion(rdfs:label "chief cell of parathyroid gland") -SubClassOf( ) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (carbohydrate secreting cell) @@ -37516,6 +37608,7 @@ AnnotationAssertion( "FMA:83435") AnnotationAssertion( "brown adipose cell") AnnotationAssertion( "brown fat cell") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brown adipocyte") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -37538,7 +37631,6 @@ AnnotationAssertion(rdfs:label "dend EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -37611,6 +37703,7 @@ AnnotationAssertion(Annotation( "noradrenaline secreting cell") AnnotationAssertion( "norepinephrin secreting cell") AnnotationAssertion( "norepinephrine secreting cell") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "noradrenergic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -37661,7 +37754,7 @@ SubClassOf( (stromal cell) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "MESH:D017154") "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "MESH:D017154") "A connective tissue cell of an organ found in the loose connective tissue.") AnnotationAssertion( ) AnnotationAssertion( "BTO:0002064") AnnotationAssertion( "FMA:83624") @@ -37690,6 +37783,7 @@ AnnotationAssertion( "granulosa cell") SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (type D enteroendocrine cell) @@ -37701,20 +37795,20 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "type D enteroendocrine cell") SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (theca cell) -AnnotationAssertion(Annotation( "MESH:D013799") "A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precusors of estrogens in the granulosa cells.") +AnnotationAssertion(Annotation( "MESH:D013799") Annotation( "PMID:15833266") Annotation( "PMID:36758341") "A specialized stromal cell that forms the theca layer outside the basal lamina lining the ovarian follicle, appearing during the secondary follicle stage.") AnnotationAssertion( ) AnnotationAssertion( "BTO:0002850") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "theca cell") -SubClassOf( ) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (enkephalin secreting cell) @@ -37730,17 +37824,16 @@ SubClassOf( (type G enteroendocrine cell) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") Annotation( "MESH:D019863") "An endocrine cell found in the pyloric gland mucosa (antral mucosa) of the stomach of mammals and responsible for the secretion of gastrin and enkephalin. Most abundant in pyloric antrum, pyramidal in form with a narrow apex bearing long microvilli.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") Annotation( "MESH:D019863") Annotation( "PMID:10700044") Annotation( "PMID:35674015") Annotation( "PMID:37240181") "An endocrine cell found in the stomach and duodenum and is responsible for the secretion of gastrin and enkephalin. Most abundant in pyloric antrum, pyramidal in form with a narrow apex bearing long microvilli.") AnnotationAssertion( "BTO:0004108") AnnotationAssertion( "FMA:67609") AnnotationAssertion( "G cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "type G enteroendocrine cell") SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (gastrin secreting cell) @@ -37774,6 +37867,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") Annotation( "MESH:D032390") "A precursor cell destined to differentiate into smooth muscle myocytes.") AnnotationAssertion( "FMA:84798") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000514") AnnotationAssertion(Annotation( "MESH:D032390") "myoblast, smooth muscle") AnnotationAssertion( "satellite cell") AnnotationAssertion( ) @@ -37843,6 +37937,7 @@ SubClassOf( "MESH:D009476") "A neuron which sends impulses peripherally to activate muscles or secretory cells.") AnnotationAssertion( "output neuron") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "efferent neuron") SubClassOf( ) @@ -37913,7 +38008,6 @@ AnnotationAssertion(rdfs:label "proe EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -37943,7 +38037,6 @@ AnnotationAssertion(Annotation( "basophilic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -37961,7 +38054,6 @@ AnnotationAssertion(Annotation( "polychromatophilic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -38024,12 +38116,6 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (neuronal brush cell) - -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "neuronal brush cell") -SubClassOf( ) - # Class: (megakaryocyte) AnnotationAssertion(Annotation( "ISBN:0721601464") Annotation( "MESH:D008533") Annotation( "PMID:31043076") Annotation( "http://en.wikipedia.org/wiki/Megakaryocyte") "A large hematopoietic cell (50 to 100 micron) with a lobated nucleus. Once mature, this cell undergoes multiple rounds of endomitosis and cytoplasmic restructuring to allow platelet formation and release.") @@ -38055,6 +38141,7 @@ DisjointClasses( "GOC:amm") Annotation( "GOC:dsd") Annotation( "GOC:tfm") Annotation( "GO_REF:0000031") Annotation( "ISBN:0721601464") Annotation( "MESH:D055014") Annotation( "PMCID:PMC2213186") Annotation( "PMCID:PMC548021") Annotation( "PMID:16551251") Annotation( "PMID:16647566") Annotation( "http://en.wikipedia.org/wiki/CFU-GM") Annotation( "http://www.copewithcytokines.de") "A hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages. These cells are CD123-positive, and do not express Gata1 or Gata2 but do express C/EBPa, and Pu.1.") AnnotationAssertion( ) AnnotationAssertion(Annotation( "http://www.copewithcytokines.de") "CFU-C , Colony forming unit in culture") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000557") AnnotationAssertion(Annotation( "ISBN:0721601464") Annotation( "PMCID:PMC2213186") Annotation( "PMCID:PMC548021") "colony forming unit granulocyte macrophage") AnnotationAssertion(Annotation( "ISBN:0721601464") Annotation( "PMCID:PMC2213186") Annotation( "PMCID:PMC548021") "granulocyte-macrophage progenitor") AnnotationAssertion( "granulocyte/monocyte precursor") @@ -38068,9 +38155,7 @@ AnnotationAssertion(rdfs:label "gran EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -38091,7 +38176,6 @@ AnnotationAssertion( "reticulocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -38120,7 +38204,6 @@ AnnotationAssertion(rdfs:label "prom EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -38171,7 +38254,6 @@ AnnotationAssertion(rdfs:label "angi EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -38209,10 +38291,10 @@ AnnotationAssertion(Annotation( "FMA:68653") "thyroid parafollicular cell") AnnotationAssertion(rdfs:label "parafollicular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -38334,7 +38416,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pyramidal neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal rod cell) @@ -38383,6 +38465,7 @@ AnnotationAssertion( "acinous cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "acinar cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -38423,7 +38506,6 @@ AnnotationAssertion(Annotation( "olfactory granule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -38468,7 +38550,6 @@ AnnotationAssertion(rdfs:label "hepa EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -38586,7 +38667,9 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") Annotation( "ISBN:0517223651") Annotation( "PMID:16687276") Annotation( "http://en.wikipedia.org/wiki/Pinealocyte") "This cell type produces and secretes melatonin and forms the pineal parenchyma. Extending from each cell body, which has a spherical, oval or lobulated mucleus, are one or more tortuous basophilic processes, containing parallel microtubules known as synaptic ribbons. These processes end in expanded terminal buds near capillaries or less, frequently, ependymal cells of the pineal recess. The terminal buds contain granular endoplasmic reticulum, mitochondria and electron-dense cored vesicles, which store monoamines and polypeptide hormones, release of which appears to require sympathetic innervation.") AnnotationAssertion( "BTO:0001068") AnnotationAssertion( "FMA:83417") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pinealocyte") +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -38769,8 +38852,8 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A columnar/cuboidal epithelial cell that secretes cerebrospinal fluid.") AnnotationAssertion(rdfs:label "cerebrospinal fluid secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -38782,7 +38865,7 @@ AnnotationAssertion( "stellate interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (PP cell) @@ -38947,8 +39030,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "retinal ganglion cell") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (retina horizontal cell) @@ -38970,12 +39054,12 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:mtg_cardiacconduct_nov11") Annotation( "GOC:tfm") Annotation( "ISBN:0323052908") Annotation( "PMID:22426062") Annotation( "PMID:4711263") "Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei.") AnnotationAssertion( ) -AnnotationAssertion( "FMA:83808") AnnotationAssertion( "cardiocyte") AnnotationAssertion( "BTO:0001539") AnnotationAssertion( "CALOHA:TS-0115") AnnotationAssertion( "FMA:14067") AnnotationAssertion( "MESH:D032383") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000746") AnnotationAssertion(Annotation( "GO:0048739") "cardiac muscle fiber") AnnotationAssertion( "cardiac myocyte") AnnotationAssertion( "cardiomyocyte") @@ -39005,8 +39089,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "retinal bipolar neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -39017,6 +39100,7 @@ SubClassOf( ObjectSomeValuesFrom( (cone retinal bipolar cell) AnnotationAssertion(Annotation( "PMID:14689473") "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer.") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cone retinal bipolar cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -39254,7 +39338,6 @@ AnnotationAssertion(rdfs:comment "Pl AnnotationAssertion(rdfs:label "plasma cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39468,7 +39551,6 @@ AnnotationAssertion(rdfs:comment "Mo AnnotationAssertion(rdfs:label "pro-NK cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39497,7 +39579,6 @@ AnnotationAssertion(rdfs:comment "Hu AnnotationAssertion(rdfs:label "pro-B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39576,7 +39657,6 @@ AnnotationAssertion(rdfs:label "hema EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39785,7 +39865,6 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "classical monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39810,6 +39889,7 @@ SubClassOf( ObjectSomeValuesFrom( (central nervous system macrophage) AnnotationAssertion(Annotation( "GO_REF:0000031") Annotation( "PMID:16322748") "A tissue-resident macrophage found in the central nervous system.") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0000878") AnnotationAssertion( "CNS macrophage") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "central nervous system macrophage") @@ -39827,7 +39907,6 @@ AnnotationAssertion(rdfs:label "peri EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39837,11 +39916,11 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:add") Annotation( "GOC:ana") Annotation( "GO_REF:0000031") Annotation( "PMID:16168663") Annotation( "PMID:17016554") Annotation( "PMID:17016559") "An immature myeloid leukocyte of heterogeneous phenotype found particularly in cancer and sepsis patients that is capable of suppressing activity of T cells in ex vivo assays. This cell type is CD45-positive, CD11b-positive.") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Markers: Mouse: CD11b+GR1+CD31+; Human: CD34+ CD33+CD15-CD13+. (According to some reports in humans these cells are iNOS+ARG1+IL13+IFNg+); location: In cancerous tissue; in the blood and lymphoid organs in sepsis.") AnnotationAssertion(rdfs:label "myeloid suppressor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39882,7 +39961,6 @@ AnnotationAssertion( "DN1 thymic pro-T cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39923,7 +40001,6 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "pre-natural killer cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -39946,6 +40023,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:add") Annotation( "GOC:rhs") Annotation( "GOC:tfm") Annotation( "GO_REF:0000031") Annotation( "ISBN:0781735149") "A lymphocyte of B lineage with the commitment to express an immunoglobulin complex.") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Types of B lineage lymphocytes include B cells and antibody secreting cells (plasmablasts and plasma cells). Lymphocytes of B cell lineage can be distinguished from those of T cell lineage by their lack of CD3e (as part of the T cell receptor complex).") AnnotationAssertion(rdfs:label "lymphocyte of B lineage") @@ -40340,6 +40418,7 @@ AnnotationAssertion(rdfs:comment "Or AnnotationAssertion(rdfs:label "CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor") EquivalentClasses( ObjectUnionOf( )) SubClassOf( ) +SubClassOf( ) # Class: (Kit and Sca1-positive hematopoietic stem cell) @@ -40350,7 +40429,6 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "Kit and Sca1-positive hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40370,12 +40448,14 @@ AnnotationAssertion(rdfs:comment "Or AnnotationAssertion(rdfs:label "CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor") EquivalentClasses( ObjectUnionOf( )) SubClassOf( ) +SubClassOf( ) # Class: (CD115-positive monocyte OR common dendritic progenitor) AnnotationAssertion(rdfs:comment "Originally described in the dendritic cell ontology (DC_CL:1111000)(PMID:19243617).") AnnotationAssertion(rdfs:label "CD115-positive monocyte OR common dendritic progenitor") EquivalentClasses( ObjectUnionOf( )) +SubClassOf( ) SubClassOf( ) # Class: (CD34-positive, CD38-positive common lymphoid progenitor) @@ -40389,7 +40469,6 @@ AnnotationAssertion(rdfs:label "CD34 EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40406,7 +40485,6 @@ EquivalentClasses( ObjectIntersection SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40438,7 +40516,6 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "CD34-positive, CD38-negative hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40460,7 +40537,6 @@ AnnotationAssertion(rdfs:label "Kit- EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40496,7 +40572,6 @@ AnnotationAssertion(rdfs:label "CD7- EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40510,7 +40585,6 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "CD7-positive lymphoid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40526,9 +40600,7 @@ AnnotationAssertion( "Surface markers are for mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000041) CDP are reportedly CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD11c-positive, CD14-negative, CD19-negative, CD20-negative, CD56-negative, B220-negative, Ly6g-negative, MHCII-positive, and Ter119-negative. (PMID:19243617).") AnnotationAssertion(rdfs:label "common dendritic progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40553,6 +40625,7 @@ AnnotationAssertion(rdfs:comment "Or AnnotationAssertion(rdfs:label "CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor") EquivalentClasses( ObjectUnionOf( )) SubClassOf( ) +SubClassOf( ) # Class: (cerebellar granule cell) @@ -40565,6 +40638,7 @@ AnnotationAssertion(rdfs:label "cere EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40576,7 +40650,6 @@ AnnotationAssertion(rdfs:label "cort EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (hippocampal granule cell) @@ -40594,6 +40667,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( ) AnnotationAssertion( "2011-11-16T04:28:16Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0001035") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bone cell") @@ -40632,7 +40706,6 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "CD14-positive monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40668,7 +40741,6 @@ AnnotationAssertion(rdfs:label "comm EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40730,7 +40802,6 @@ AnnotationAssertion( "erythroid progenitor cell, mammalian") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40766,7 +40837,6 @@ AnnotationAssertion( "CD34-negative, CD117-positive innate lymphoid cell, human") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40794,7 +40864,6 @@ AnnotationAssertion( "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40819,7 +40888,6 @@ AnnotationAssertion(rdfs:comment "Ty AnnotationAssertion(rdfs:label "lymphocyte of B lineage, CD19-positive") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40929,7 +40997,6 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40944,7 +41011,6 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -40980,7 +41046,6 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Kit-positive macrophage dendritic cell progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -41068,7 +41133,6 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "Kit-negative, Ly-76 high orthochromatophilic erythroblasts") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -41085,7 +41149,6 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "CD71-negative, GlyA-positive orthochromatic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -41123,7 +41186,6 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "GlyA-positive erythrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -41136,7 +41198,6 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Ly-76 high positive erythrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -41376,16 +41437,16 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (CD8alpha-positive thymic conventional dendritic cell) +# Class: (CD8-alpha-positive thymic conventional dendritic cell) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:19273629") Annotation( "http://www.immgen.org/index_content.html") "A conventional thymic dendritic cell that is CD8alpha-positive.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:19273629") Annotation( "http://www.immgen.org/index_content.html") "A conventional thymic dendritic cell that is CD8-alpha-positive.") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2010-06-07T02:48:36Z"^^xsd:dateTime) AnnotationAssertion( "CD8alpha-alpha-positive thymic conventional dendritic cell") AnnotationAssertion( "DC.8+.Th") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "CD8alpha-positive thymic conventional dendritic cell") +AnnotationAssertion(rdfs:label "CD8-alpha-positive thymic conventional dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -41413,10 +41474,12 @@ AnnotationAssertion(Annotation( ) "ATI") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set AGER can identify the Human cell type pulmonary alveolar type 1 cell in the Lung with a confidence of 0.85 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "pulmonary alveolar type 1 cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pulmonary alveolar type 2 cell) @@ -41443,14 +41506,17 @@ AnnotationAssertion( "lung type II cell") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set SFTPA1 can identify the Human cell type pulmonary alveolar type 2 cell in the Lung with a confidence of 0.95 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "pulmonary alveolar type 2 cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic acinar cell) @@ -41479,6 +41545,7 @@ AnnotationAssertion( "2010-09-10T10:48:54Z"^^xsd:dateTime) AnnotationAssertion( "FMA:62939") AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002067") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "type A enteroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -41559,16 +41626,20 @@ SubClassOf( (brush cell of tracheobronchial tree) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") Annotation( "PMID:15817800") "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") Annotation( "PMID:15817800") Annotation( "PMID:30291131") Annotation( "PMID:37925434") "A rare type of columnar epithelial cell that is part of the tracheobronchial epithelium. This cell is characterized by a distinctive tuft of apical microvilli, which extends into the cytoplasm, and a pear-shaped morphology, broad at the base and tapering to a narrow apex. It plays vital roles in chemosensation, producing cytokines like IL-25, and enhancing mucociliary clearance through acetylcholine release to support mucus movement and airway defense.") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2010-06-29T03:22:46Z"^^xsd:dateTime) AnnotationAssertion( "pulmonary brush cell") AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "brush cell of tracheobronchial tree") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endo-epithelial cell) @@ -41576,6 +41647,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2010-06-29T03:38:14Z"^^xsd:dateTime) AnnotationAssertion( "FMA:69075") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endo-epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -41785,6 +41857,7 @@ AnnotationAssertion( "2010-08-24T01:42:02Z"^^xsd:dateTime) AnnotationAssertion( "FMA:69273") AnnotationAssertion( "epithelial cell of zona glomerulosa of adrenal gland") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "type I cell of adrenal cortex") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -41816,6 +41889,7 @@ AnnotationAssertion( "CD38-negative naive B lymphocyte") AnnotationAssertion( "CD38-negative naive B-cell") AnnotationAssertion( "CD38-negative naive B-lymphocyte") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "CD38-negative naive B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) @@ -42115,6 +42189,7 @@ AnnotationAssertion( "2010-08-24T02:05:28Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0004167") AnnotationAssertion( "FMA:68458") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002138") AnnotationAssertion( "LEC") AnnotationAssertion( "lymphatic endothelial cell") AnnotationAssertion( ) @@ -42133,6 +42208,7 @@ AnnotationAssertion( AnnotationAssertion( "BTO:0001854") AnnotationAssertion( "CALOHA:TS-1106") AnnotationAssertion( "FMA:67755") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002139") AnnotationAssertion( "vascular endothelial cell") AnnotationAssertion( "cubodial endothelial cell of vascular tree") AnnotationAssertion( ) @@ -42140,19 +42216,19 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "endothelial cell of vascular tree") SubClassOf( ) -# Class: (acinar cell of sebaceous gland) +# Class: (skin sebocyte) -AnnotationAssertion(Annotation( "GOC:tfm") "A sebum secreting cell of the skin that secretes sebum into the hair follicles.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:37205445") "An acinar cell that is part of a skin sebaceous gland. This cell produces and secretes sebum into hair follicles.") AnnotationAssertion( ) AnnotationAssertion( "2010-08-24T09:27:52Z"^^xsd:dateTime) -AnnotationAssertion( "sebocyte") +AnnotationAssertion( "acinar cell of sebaceous gland") AnnotationAssertion( "BTO:0004613") AnnotationAssertion( "FMA:70953") -AnnotationAssertion(rdfs:label "acinar cell of sebaceous gland") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +AnnotationAssertion( "acinar cell of skin sebaceous gland") +AnnotationAssertion(rdfs:label "skin sebocyte") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (capillary endothelial cell) @@ -42172,7 +42248,7 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ciliated columnar cell of tracheobronchial tree) +# Class: (multiciliated columnar cell of tracheobronchial tree) AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:28400610") "A multi-ciliated epithelial cell located in the trachea and bronchi, characterized by a columnar shape and motile cilia on its apical surface. These cilia facilitate mucociliary clearance by moving mucus and trapped particles toward the pharynx.") AnnotationAssertion( ) @@ -42180,14 +42256,20 @@ AnnotationAssertion( "2010-08-24T03:38:29Z"^^xsd:dateTime) AnnotationAssertion( "FMA:70542") AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002145") +AnnotationAssertion( "ciliated columnar cell of tracheobronchial tree") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set C1orf194, MS4A8 can identify the Human cell type ciliated columnar cell of tracheobronchial tree in the Lung with a confidence of 0.86 (NS-Forest FBeta value).") AnnotationAssertion(Annotation( ) Annotation( "PMID:25386990") rdfs:comment "These cells possess numerous cilia on their surface, typically ranging from 200 to 300 per cell. The cilia vary in length, measuring between 6 to 7 μm in the upper airways (trachea) and becoming shorter, around 4 μm, in the smaller airways (terminal bronchioles). These cells form a two-layered 'coat' in the airway: the lower 'sol' layer is watery, allowing the cilia to beat in coordinated waves, while the upper 'gel' layer is thick and sticky, trapping inhaled particles.") -AnnotationAssertion(rdfs:label "ciliated columnar cell of tracheobronchial tree") +AnnotationAssertion(rdfs:label "multiciliated columnar cell of tracheobronchial tree") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dental pulp cell) @@ -42263,7 +42345,6 @@ AnnotationAssertion( "epithelial debris of Malassez") AnnotationAssertion(rdfs:label "epithelial cell of Malassez") SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (olfactory epithelial cell) @@ -42272,6 +42353,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2010-08-26T01:47:13Z"^^xsd:dateTime) AnnotationAssertion( "FMA:67870") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "olfactory epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -42301,7 +42383,6 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "keratinized cell of the oral mucosa") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -42359,9 +42440,9 @@ AnnotationAssertion( "2010-08-25T03:22:08Z"^^xsd:dateTime) AnnotationAssertion( "FMA:62948") AnnotationAssertion(rdfs:label "epithelial cell of stomach") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mucous cell of stomach) @@ -42370,10 +42451,11 @@ AnnotationAssertion( "2010-08-25T03:38:51Z"^^xsd:dateTime) AnnotationAssertion( "FMA:63464") AnnotationAssertion(rdfs:label "mucous cell of stomach") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (stem cell of gastric gland) @@ -42417,7 +42499,6 @@ AnnotationAssertion(rdfs:label "glom EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -42674,24 +42755,27 @@ AnnotationAssertion( "marrow fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (pulmonary interstitial fibroblast) AnnotationAssertion(Annotation( "GOC:tfm") "A fibroblasts found in interstitial spaces in the pulmonary tract. Greater numbers of these cells are found in idiopathic pulmonary fibrosis.") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2010-09-07T02:29:38Z"^^xsd:dateTime) AnnotationAssertion( "FMA:84467") AnnotationAssertion( "pulmonary myofibroblast") AnnotationAssertion( "pulmonary septal cell") AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set DPT, APOD can identify the Human cell type pulmonary interstitial fibroblast in the Lung with a confidence of 0.58 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "pulmonary interstitial fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (nucleate cell) @@ -42710,6 +42794,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2010-09-08T08:53:42Z"^^xsd:dateTime) AnnotationAssertion( "FMA:70611") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002243") AnnotationAssertion( "smooth muscle fiber of sphincter of pupil") AnnotationAssertion( "smooth muscle fibre of sphincter of pupil") AnnotationAssertion( ) @@ -42769,25 +42854,25 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2010-09-08T09:26:53Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "epithelial cell of alimentary canal") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of esophagus) -AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the esophagus.") +AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the lining of the esophagus.") AnnotationAssertion( ) AnnotationAssertion( "2010-09-08T09:28:20Z"^^xsd:dateTime) AnnotationAssertion( "FMA:63071") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of esophagus") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of large intestine) -AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the large intestine.") +AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the lining of the large intestine.") AnnotationAssertion( ) AnnotationAssertion( "2010-09-08T09:28:22Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0004297") @@ -42798,10 +42883,11 @@ AnnotationAssertion(rdfs:label "epit EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of small intestine) -AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the small intestine.") +AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the lining of the small intestine.") AnnotationAssertion( ) AnnotationAssertion( "2010-09-08T09:41:46Z"^^xsd:dateTime) AnnotationAssertion( "FMA:256159") @@ -42813,20 +42899,22 @@ SubClassOf( ObjectSomeValuesFrom( (stromal cell of endometrium) -AnnotationAssertion(Annotation( "PMID:11331626") Annotation( "PMID:30013421") Annotation( "PMID:30309298") Annotation( "Wiki:Decidualization&oldid=908981933#Endometrial_stromal_cells_(ESCs)") Annotation( "https://doi.org/10.1038/s41591-020-1040-z") "A stromal cell of the endometrium that is fibroblastic in appearance. During decidualization this cell may differentiate into a decidual stromal cell.") +AnnotationAssertion(Annotation( "PMID:11331626") Annotation( "PMID:30013421") Annotation( "PMID:30309298") Annotation( "PMID:31907034") Annotation( "Wikipedia:Decidualization") Annotation( "https://doi.org/10.1038/s41591-020-1040-z") "A stromal cell of the endometrium, characterized by its fibroblast-like morphology, regenerative capacity, and ability to undergo decidualization. It differentiates into a decidual stromal cell during pregnancy, essential for embryo implantation and maintenance. This cell is involved in tissue proliferation, remodeling, and breakdown, responding to hormonal changes, particularly estrogen and progesterone.") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2010-09-08T09:50:04Z"^^xsd:dateTime) +AnnotationAssertion( "stromal cell of uterus") AnnotationAssertion( "CALOHA:TS-1266") AnnotationAssertion( "FMA:86490") AnnotationAssertion( "endometrial stromal cell") AnnotationAssertion(Annotation( "PMID:30309298") "endometrial stromal fibroblast") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stromal cell of endometrium") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (supporting cell of carotid body) @@ -42847,6 +42935,7 @@ AnnotationAssertion( "2010-09-08T01:46:51Z"^^xsd:dateTime) AnnotationAssertion( "FMA:256167") AnnotationAssertion( "MESH:D000072637") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of thyroid gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -42874,10 +42963,10 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2010-09-08T02:29:38Z"^^xsd:dateTime) AnnotationAssertion( "FMA:70547") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of parathyroid gland") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of viscerocranial mucosa) @@ -42896,6 +42985,7 @@ AnnotationAssertion( ) AnnotationAssertion( "2010-09-14T10:57:26Z"^^xsd:dateTime) AnnotationAssertion( "FMA:63134") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002262") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endothelial cell of sinusoid") @@ -42910,10 +43000,10 @@ AnnotationAssertion( "2010-09-10T10:54:42Z"^^xsd:dateTime) AnnotationAssertion( "FMA:83411") AnnotationAssertion(rdfs:label "type A cell of stomach") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type D cell of colon) @@ -42928,7 +43018,9 @@ AnnotationAssertion(rdfs:label "type EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type D cell of small intestine) @@ -42944,6 +43036,7 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type D cell of stomach) @@ -42955,10 +43048,11 @@ AnnotationAssertion( "stomach D-cell") AnnotationAssertion( "stomach delta cell") AnnotationAssertion(rdfs:label "type D cell of stomach") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (histamine secreting cell) @@ -43199,6 +43293,7 @@ AnnotationAssertion( AnnotationAssertion( "CALOHA:TS-0263") AnnotationAssertion( "FMA:82840") AnnotationAssertion( "WBbt:0007028") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002321") AnnotationAssertion(rdfs:label "embryonic cell (metazoa)") SubClassOf( ) @@ -43317,19 +43412,22 @@ AnnotationAssertion( "basal epithelial cell of tracheobronchial tree") SubClassOf( ) -# Class: (ciliated cell of the bronchus) +# Class: (multiciliated epithelial cell of the bronchus) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:18757316") "A ciliated cell of the bronchus.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:18757316") "A multi-ciliated epithelial cell located in the bronchus epithelium, characterized by a columnar shape and motile cilia on its apical surface.") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2010-09-20T02:21:12Z"^^xsd:dateTime) +AnnotationAssertion( "ciliated epithelial cell of the bronchus") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "ciliated cell of the bronchus") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +AnnotationAssertion(rdfs:label "multiciliated epithelial cell of the bronchus") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neural crest derived adipocyte) @@ -43349,6 +43447,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2010-09-20T02:31:53Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0001107") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "preadipocyte") SubClassOf( ) @@ -43357,6 +43456,7 @@ SubClassOf( "GOC:tfm") Annotation( "PMID:18719589") "A preadipocyte that is capable of differentiating into a brown adipocyte. This cell type expresses uncoupling protein-1, PPAR-gamma, PR-domain-containing 16; and PGC-1alpha (peroxisome proliferator-activated receptor-gamma (PPARgamma) coactivator-1alpha).") AnnotationAssertion( ) AnnotationAssertion( "2010-09-20T02:38:38Z"^^xsd:dateTime) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brown preadipocyte") SubClassOf( ) @@ -43379,7 +43479,6 @@ AnnotationAssertion(rdfs:comment "Hu AnnotationAssertion(rdfs:label "CD56-positive, CD161-positive immature natural killer cell, human") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -43421,7 +43520,6 @@ AnnotationAssertion(rdfs:comment "Hu AnnotationAssertion(rdfs:label "CD56-negative, CD161-positive immature natural killer cell, human") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -43436,6 +43534,7 @@ AnnotationAssertion( ) AnnotationAssertion( "2010-09-21T04:33:05Z"^^xsd:dateTime) AnnotationAssertion( "FMA:75621") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002350") AnnotationAssertion( "endocardial endothelial cell") AnnotationAssertion(Annotation( "FMA:75621") "endothelial cell of endocardium") AnnotationAssertion( ) @@ -43474,7 +43573,6 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fetal liver hematopoietic progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -43495,7 +43593,6 @@ AnnotationAssertion( "yolk sac hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -43523,6 +43620,7 @@ AnnotationAssertion( AnnotationAssertion(Annotation( "doi:10.3389/fncir.2020.611841") "granule cell precursor") AnnotationAssertion(Annotation( "doi:10.3389/fncir.2020.611841") "granule cell progenitor") AnnotationAssertion(Annotation( "doi:10.3389/fncir.2020.611841") Annotation( ) "GCP") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebellar granule cell precursor") SubClassOf( ) SubClassOf( ) @@ -43552,6 +43650,7 @@ AnnotationAssertion( ) AnnotationAssertion( "2010-09-23T03:17:12Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0004562") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002364") AnnotationAssertion( "cTEC") AnnotationAssertion( ) AnnotationAssertion( ) @@ -43566,6 +43665,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2010-09-23T03:17:14Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0004563") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002365") AnnotationAssertion( "mTEC") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medullary thymic epithelial cell") @@ -43579,6 +43679,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2010-09-23T03:46:34Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0004519") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002366") AnnotationAssertion( "myometrium smooth muscle cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "myometrial cell") @@ -43598,28 +43699,30 @@ SubClassOf(Annotation( SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (respiratory epithelial cell) +# Class: (respiratory tract epithelial cell) -AnnotationAssertion(Annotation( "GOC:tfm") "An endo-epithelial cell of the respiratory tract.") +AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the respiratory tract epithelium. These cells have an endodermal origin.") AnnotationAssertion( ) AnnotationAssertion( "2010-09-23T04:38:49Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0004533") AnnotationAssertion( "airway epithelial cell") +AnnotationAssertion( "respiratory epithelial cell") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "respiratory epithelial cell") +AnnotationAssertion(rdfs:label "respiratory tract epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (respiratory goblet cell) +# Class: (respiratory tract goblet cell) AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0721662544") "A simple columnar epithelial cell that secretes mucin. Rough endoplasmic reticulum, mitochondria, the nucleus, and other organelles are concentrated in the basal portion. The apical plasma membrane projects microvilli to increase surface area for secretion.") AnnotationAssertion( ) AnnotationAssertion( "2010-09-23T04:42:27Z"^^xsd:dateTime) AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002370") +AnnotationAssertion( "respiratory goblet cell") AnnotationAssertion(Annotation( "MP:0010863") "respiratory mucosa goblet cells") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "respiratory goblet cell") +AnnotationAssertion(rdfs:label "respiratory tract goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -43632,6 +43735,7 @@ AnnotationAssertion( "2010-09-24T01:13:01Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "FBbt:00005812") "myofiber") AnnotationAssertion(Annotation( "FBbt:00005812") "myofibril") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "myotube") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -43830,7 +43934,6 @@ AnnotationAssertion(rdfs:comment "ET AnnotationAssertion(rdfs:label "early T lineage precursor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -43852,18 +43955,17 @@ AnnotationAssertion( "oligodendrocyte precursor cell") SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell) +# Class: (CD4-negative, CD8-alpha-negative, CD11b-positive dendritic cell) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "http://www.immgen.org/index_content.html") "Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-negative, CD8_alpha-negative and is CD205-positive.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "http://www.immgen.org/index_content.html") "CD4-negative, CD8-alpha-negative, CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-negative, CD8-alpha-negative and is CD205-positive.") AnnotationAssertion( ) AnnotationAssertion( "2010-11-22T01:10:28Z"^^xsd:dateTime) AnnotationAssertion( "DC.8-4-11b+") AnnotationAssertion( "spleen double-negative dendritic cell") -AnnotationAssertion(rdfs:label "Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell") +AnnotationAssertion(rdfs:label "CD4-negative, CD8-alpha-negative, CD11b-positive dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -43886,15 +43988,15 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (CD8alpha-negative thymic conventional dendritic cell) +# Class: (CD8-alpha-negative thymic conventional dendritic cell) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:19273629") Annotation( "http://www.immgen.org/index_content.html") "A conventional thymic dendritic cell that is CD8alpha-negative.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:19273629") Annotation( "http://www.immgen.org/index_content.html") "A conventional thymic dendritic cell that is CD8-alpha-negative.") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2010-11-23T10:58:53Z"^^xsd:dateTime) AnnotationAssertion( "DC.8-.Th") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "CD8alpha-negative thymic conventional dendritic cell") +AnnotationAssertion(rdfs:label "CD8-alpha-negative thymic conventional dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -43959,10 +44061,12 @@ SubClassOf( ObjectSomeValuesFrom( (nasal mucosa goblet cell) AnnotationAssertion(Annotation( "GOC:cjm") Annotation( "GOC:tfm") "A goblet cell located in the nasal epithelium.") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2010-12-03T03:03:02Z"^^xsd:dateTime) AnnotationAssertion( "MP:0002262") AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "nasal mucosa goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -43970,6 +44074,7 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (peritubular myoid cell) @@ -44055,6 +44160,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A specialized cell involved in auditory sensory perception.") AnnotationAssertion( ) AnnotationAssertion( "2010-12-06T03:18:43Z"^^xsd:dateTime) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "auditory epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -44106,6 +44212,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A smooth muscle cell of the intestine.") AnnotationAssertion( ) AnnotationAssertion( "2011-01-17T03:39:38Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002504") AnnotationAssertion( "intestinal smooth muscle cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteric smooth muscle cell") @@ -44216,6 +44323,7 @@ AnnotationAssertion( ) AnnotationAssertion( "2011-02-28T12:38:01Z"^^xsd:dateTime) AnnotationAssertion( "amniotic epithelial cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of amnion") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -44254,6 +44362,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2011-02-28T01:42:12Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0004577") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002539") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "aortic smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -44386,6 +44495,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A fibroblast of the lymphatic system.") AnnotationAssertion( ) AnnotationAssertion( "2011-02-28T05:16:18Z"^^xsd:dateTime) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fibroblast of lymphatic vessel") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) @@ -44475,14 +44585,13 @@ SubClassOf( ObjectSomeValuesFrom( (intestinal epithelial cell) -AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the intestine.") +AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell of the lining of the intestine.") AnnotationAssertion( ) AnnotationAssertion( "2011-03-01T05:18:31Z"^^xsd:dateTime) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal epithelial cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (nucleus pulposus cell of intervertebral disc) @@ -44730,6 +44839,7 @@ AnnotationAssertion( ) AnnotationAssertion( "2011-03-06T05:01:28Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0003336") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002591") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of the pulmonary artery") @@ -44811,6 +44921,7 @@ AnnotationAssertion( ) AnnotationAssertion( "2011-03-06T05:46:39Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0004402") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002598") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bronchial smooth muscle cell") @@ -44833,6 +44944,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A smooth muscle cell of the trachea.") AnnotationAssertion( ) AnnotationAssertion( "2011-03-06T05:50:28Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002600") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of trachea") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -44844,6 +44956,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A smooth muscle cell of the uterus.") AnnotationAssertion( ) AnnotationAssertion( "2011-03-06T05:53:28Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002601") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "uterine smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -44938,10 +45051,10 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2011-03-06T07:42:06Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "raphe nuclei neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuron of the dorsal spinal cord) @@ -44949,8 +45062,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2011-03-06T07:43:34Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "neuron of the dorsal spinal cord") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -44960,8 +45072,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2011-03-06T07:46:03Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "neuron of the ventral spinal cord") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -44971,7 +45082,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2011-03-06T07:47:12Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "striatum neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -44981,8 +45092,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2011-03-06T07:48:42Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "neuron of the substantia nigra") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -45047,6 +45157,7 @@ SubClassOf( ObjectSomeValuesFrom( "FBC:Autogenerated") "Any epithelial cell that is part of some gingival epithelium.") AnnotationAssertion( ) AnnotationAssertion( "2011-03-14T12:46:28Z"^^xsd:dateTime) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "gingival epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -45145,7 +45256,6 @@ AnnotationAssertion(rdfs:label "kera EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (squamous endothelial cell) @@ -45156,17 +45266,21 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "squamous endothelial cell") SubClassOf( ) -# Class: (glandular cell of endometrium) +# Class: (glandular endometrial unciliated epithelial cell) -AnnotationAssertion(Annotation( "GOC:tfm") "A glandular epithelial cell of the endometrium.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:25023676") "A glandular epithelial cell of the endometrium. Following ovulation, these cells secrete a glycogen-rich substance known as histotroph or uterine milk, which nourishes the embryo if implantation occurs.") AnnotationAssertion( ) AnnotationAssertion( "2011-07-08T03:54:08Z"^^xsd:dateTime) +AnnotationAssertion( "glandular cell of endometrium") AnnotationAssertion( "FMA:86489") -AnnotationAssertion(rdfs:label "glandular cell of endometrium") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +AnnotationAssertion(rdfs:label "glandular endometrial unciliated epithelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (glandular cell of esophagus) @@ -45176,10 +45290,10 @@ AnnotationAssertion( AnnotationAssertion( "FMA:86548") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "glandular cell of esophagus") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (glandular cell of the large intestine) @@ -45202,10 +45316,10 @@ AnnotationAssertion( "FMA:86554") AnnotationAssertion( "glandular cell of stomach") AnnotationAssertion(rdfs:label "glandular epithelial cell of stomach") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myocardial endocrine cell of atrium) @@ -45244,6 +45358,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") Annotation( "PMID:20959166") Annotation( "PMID:21148186") "A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells.") AnnotationAssertion( ) AnnotationAssertion( "2011-08-16T02:38:01Z"^^xsd:dateTime) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "retinal progenitor cell") SubClassOf( ) SubClassOf( ) @@ -45254,6 +45369,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") Annotation( "PMID:18816858") "A skeletal muscle cell that is part of the tongue.") AnnotationAssertion( ) AnnotationAssertion( "2011-08-16T03:10:02Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0002673") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tongue muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -45277,10 +45393,10 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2011-09-27T11:59:01Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "PP cell of intestine") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney cortical cell) @@ -45298,7 +45414,7 @@ AnnotationAssertion(Annotation( "Is_a interneuron, part_of UBERON:0002240.") AnnotationAssertion(rdfs:label "spinal cord interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (ionocyte) @@ -45330,17 +45446,18 @@ AnnotationAssertion(rdfs:label "rena SubClassOf( ) SubClassOf( ) -# Class: (multi-ciliated epithelial cell) +# Class: (multiciliated epithelial cell) AnnotationAssertion(Annotation( "CL:CVS") Annotation( "PMID:28400610") Annotation( "PMID:30422572") Annotation( "PMID:38032388") "A columnar/cuboidal epithelial cell with multiple motile cilia on its apical surface. These cells facilitate the movement of liquids such as mucus or cerebrospinal fluid across the epithelial surface.") AnnotationAssertion( "multi-ciliated cell"@en) AnnotationAssertion( "multiciliated cell"@en) AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0005012") AnnotationAssertion( "multiciliated epithelial cell"@en) +AnnotationAssertion( "multi-ciliated epithelial cell") AnnotationAssertion(Annotation( ) "MCC"@en) AnnotationAssertion( ) AnnotationAssertion(Annotation( "PMID:22118931") Annotation( "PMID:23959957") Annotation( "PMID:25729351") Annotation( "PMID:26378583") rdfs:comment "While the term 'multi-ciliated epithelial cell' refers to cells with multiple motile cilia, there are exceptions where epithelial cells may have multiple non-motile cilia. Examples include olfactory sensory neurons, which have non-motile cilia for sensory detection, and choroid plexus epithelial cells, which possess multiple non-motile cilia with transient motility during development. Multiciliated cells are essential for human health, and their dysfunction can lead to various diseases known as ciliopathies, such as primary ciliary dyskinesia. This condition affects the respiratory system, brain ventricles, and reproductive system, leading to chronic respiratory infections, hydrocephalus, and infertility") -AnnotationAssertion(rdfs:label "multi-ciliated epithelial cell") +AnnotationAssertion(rdfs:label "multiciliated epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -45472,6 +45589,7 @@ SubClassOf( "GO_REF:0000034") "Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells.") AnnotationAssertion( ) AnnotationAssertion( "2012-06-27T10:57:21Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0007010") AnnotationAssertion( "osteoprogenitor cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "preosteoblast") @@ -45627,7 +45745,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cortical interneuron"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -45724,6 +45842,7 @@ SubClassOf( ObjectSomeValuesFrom( "http://orcid.org/0000-0003-3440-1876") "An enteroendocrine cell that is located in the small intestine.") AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0009006") AnnotationAssertion( "small intestine enteroendocrine cell") AnnotationAssertion( ) AnnotationAssertion( ) @@ -45733,6 +45852,59 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (transit amplifying cell) + +AnnotationAssertion(Annotation( "PMID:24813615") Annotation( "PMID:28835754") Annotation( "http://orcid.org/0000-0003-4183-8865") "Transit-amplifying cells (TACs) are an undifferentiated population in transition between stem cells and differentiated cells.") +AnnotationAssertion( ) +AnnotationAssertion( "transient amplifying cell") +AnnotationAssertion(Annotation( "PMID:30827895") "transit amplifying progenitor cell") +AnnotationAssertion( "transit-amplifying cell") +AnnotationAssertion( "TAC") +AnnotationAssertion( "TACs") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transit amplifying cell") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (transit amplifying cell of colon) + +AnnotationAssertion(Annotation( "PMID:20801415") Annotation( "http://orcid.org/0000-0003-4183-8865") "A rapidly proliferating population of cells that differentiate from stem cells of the intestinal crypt of the colon. Stem cells located in the crypts of Lieberkühn give rise to proliferating progenitor or transit amplifying cells that differentiate into the four major epithelial cell types. These include columnar absorptive cells or enterocytes, mucous secreting goblet cells, enteroendocrine cells and paneth cells.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "transit amplifying cell of large intestine") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0009011") +AnnotationAssertion( "colon transit amplifying cell") +AnnotationAssertion( "transient amplifying cell of colon") +AnnotationAssertion( "transient amplifying cell of crypt of Lieberkuhn of colon") +AnnotationAssertion( "transit amplifying cell of crypt of Lieberkuhn of colon") +AnnotationAssertion( "transit-amplifying cell of colon") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transit amplifying cell of colon") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (transit amplifying cell of small intestine) + +AnnotationAssertion(Annotation( "PMID:20801415") Annotation( "http://orcid.org/0000-0003-4183-8865") "A rapidly proliferating population of cells that differentiate from stem cells of the intestinal crypt of the small intestine. Stem cells located in the crypts of Lieberkühn give rise to proliferating progenitor or transit amplifying cells that differentiate into the four major epithelial cell types. These include columnar absorptive cells or enterocytes, mucous secreting goblet cells, enteroendocrine cells and paneth cells.") +AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0009012") +AnnotationAssertion( "small intestine transit amplifying cell") +AnnotationAssertion( "transient amplifying cell of crypt of Lieberkuhn of small intestine") +AnnotationAssertion( "transient amplifying cell of small intestine") +AnnotationAssertion( "transit amplifying cell of crypt of Lieberkuhn of small intestine") +AnnotationAssertion( "transit-amplifying cell of small intestine") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transit amplifying cell of small intestine") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Peyer's patch lymphocyte) AnnotationAssertion(Annotation( "PMID:23525039") Annotation( "PMID:9252325") Annotation( "https://orcid.org/0000-0003-4183-8865") "A lymphocyte that is part of a Peyer's patch. These cells have a major role in driving the immune response to antigens sampled from the intestinal lumen, and in regulating the formation of follicle-associated epithelium and M cells in Peyer's patches by converting intestitial enterocytes into M cells.") @@ -45829,11 +46001,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesothelial cell of small intestine") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of colon) @@ -45842,11 +46012,9 @@ AnnotationAssertion( "mesothelial cell of large intestine") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesothelial cell of colon") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymph node mantle zone B cell) @@ -45865,6 +46033,7 @@ SubClassOf( ObjectSomeValuesFrom( "http://orcid.org/0000-0003-3440-1876") "A macrophage that is located in the colon.") AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0009038") AnnotationAssertion( "macrophage of colon") AnnotationAssertion( ) AnnotationAssertion( ) @@ -45878,14 +46047,15 @@ SubClassOf( ObjectSomeValuesFrom( "http://orcid.org/0000-0003-3440-1876") "A goblet cell that is located in the colon.") AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0009039") AnnotationAssertion( "goblet cell of colon") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "colon goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stromal cell of lamina propria of colon) @@ -45902,13 +46072,13 @@ SubClassOf( ObjectSomeValuesFrom( "http://orcid.org/0000-0003-3440-1876") "A tuft cell that is a part of the colon.") AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0009041") AnnotationAssertion( "colon tuft cell") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tuft cell of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (enteroendocrine cell of colon) @@ -45920,22 +46090,21 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteroendocrine cell of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (intestinal crypt stem cell of colon) -AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") "An intestinal crypt stem cell that is located in the colon.") +AnnotationAssertion(Annotation( "PMID:10841502") Annotation( "http://orcid.org/0000-0003-3440-1876") "An intestinal crypt stem cell that is located in the crypt of Lieberkuhn of colon.") AnnotationAssertion( ) AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0009043") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal crypt stem cell of colon") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymphocyte of small intestine lamina propria) @@ -46045,6 +46214,17 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (transit amplifying cell of anorectum) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") "A transit amplifying cell that is located in the anorectum.") +AnnotationAssertion( ) +AnnotationAssertion( "anorectum transit amplifying cell") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transit amplifying cell of anorectum") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (anorectum goblet cell) AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") "A goblet cell that is located in the anorectum.") @@ -46052,7 +46232,7 @@ AnnotationAssertion( "goblet cell of anorectum") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anorectum goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -46077,9 +46257,8 @@ AnnotationAssertion( "anorectum intestinal crypt stem cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal crypt stem cell of anorectum") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (enteroendocrine cell of anorectum) @@ -46090,7 +46269,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteroendocrine cell of anorectum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -46113,11 +46292,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "stratified squamous epithelial cell of anal canal") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tuft cell of small intestine) @@ -46130,9 +46309,14 @@ AnnotationAssertion( "tuft cell of epithelium of small intestine") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tuft cell of small intestine") +AnnotationAssertion(Annotation( "http://creativecommons.org/licenses/by/4.0/") Annotation(rdfs:comment "Figure depicts a cross section of intestinal villi in the small intestine, including the crypts of Lieberkuhn (seen here as ‘crypt’), as well as the layer specific locations of cells that exist within the gastrointestinal tract. Layers depicted here include epithelium (rows of cells bordering villus), submucosa (white space below the epithelium containing networks of neurons and ganglia depicted in pink), muscularis mucosae (blue layer), muscularis propria (referred to here as muscle layer). + +ISC: Intestinal Stem Cell +TA: Transit Amplifying Cells") ) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of endometrial gland) @@ -46146,9 +46330,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of endometrial gland") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of respiratory system lymphatic vessel) @@ -46177,11 +46361,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set HIGD1B, KCNK3 can identify the Human cell type lung pericyte in the Lung with a confidence of 0.84 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "lung pericyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Leydig stem cell) @@ -46240,6 +46426,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2021-12-13T14:39:25Z"^^xsd:dateTime) AnnotationAssertion( "EFO:0010711") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0009095") AnnotationAssertion( "uterine endothelial cell") AnnotationAssertion( ) AnnotationAssertion( ) @@ -46361,6 +46548,7 @@ SubClassOf( ObjectSomeValuesFrom( "FBC:Autogenerated") "Any endothelial cell that is part of some heart.") AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0010008") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cardiac endothelial cell") @@ -46415,7 +46603,7 @@ AnnotationAssertion( "cerebral cortex neuron") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/issues/1359") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -46453,8 +46641,8 @@ AnnotationAssertion( "This term is used in 3 GO terms that were created as part of the heart development focus project.") AnnotationAssertion(rdfs:label "cardiac neuron") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/pull/1488") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -46464,12 +46652,14 @@ AnnotationAssertion(Annotation( "dorsal spinal cord interneuron") AnnotationAssertion(rdfs:label "dorsal horn interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (spinal cord motor neuron) AnnotationAssertion(Annotation( "GOC:nv") "A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement.") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "spinal cord motor neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) @@ -46484,13 +46674,14 @@ AnnotationAssertion( "magnocellular neuron") AnnotationAssertion(rdfs:label "magnocellular neurosecretory cell") SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lens fiber cell) AnnotationAssertion(Annotation( "GO:0070307") Annotation( "GOC:nv") "A vetebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye.") AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0011004") AnnotationAssertion( "lens fibre cell") AnnotationAssertion( ) AnnotationAssertion( ) @@ -46500,9 +46691,8 @@ SubClassOf( (GABAergic interneuron) AnnotationAssertion(Annotation( "GOC:CellBLAST") Annotation( "GOC:nv") Annotation( "PMID:29724907") "An interneuron that uses GABA as a vesicular neurotransmitter. These interneurons are inhibitory") -AnnotationAssertion( ) AnnotationAssertion( "GABAergic inhibitory interneuron") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "The formal and textual definitions of this term will need to be altered if evidence for non-inhibitory GABA-ergic neurons emerges.") AnnotationAssertion(rdfs:label "GABAergic interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -46593,6 +46783,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:28369879") Annotation( "https://orcid.org/0000-0001-6164-0667") "Any fibroblast that is part of skeletal muscle tissue.") AnnotationAssertion( ) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0011027") AnnotationAssertion( "skeleton muscle fibroblast") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "skeletal muscle fibroblast") @@ -46616,6 +46807,7 @@ SubClassOf( ObjectSomeValuesFrom( (chorionic trophoblast cell) AnnotationAssertion(Annotation( "GOC:NV") "Cells of the uterine chorion that acquire specialized structural and/or functional features that characterize chorionic trophoblasts. These cells will migrate towards the spongiotrophoblast layer and give rise to syncytiotrophoblasts of the labyrinthine layer.") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0011101") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chorionic trophoblast cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -46629,17 +46821,17 @@ AnnotationAssertion(Annotation( "colonic epithelial cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "colon epithelial cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (spiral ganglion neuron) AnnotationAssertion(Annotation( "GOC:NV") "Neuron found in the spiral ganglion.") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "spiral ganglion neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -46674,8 +46866,7 @@ AnnotationAssertion( "forebrain neuron") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neuron of the forebrain") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -46696,22 +46887,25 @@ AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0017000") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "pulmonary ionocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (prostate neuroendocrine cell) AnnotationAssertion(Annotation( "PMID:33842835") Annotation( "http://orcid.org/0000-0001-7772-9578") "A neuroendocrine cell that is part of the prostate epithelium.") AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "neuroendocrine cell of prostate epithelium") AnnotationAssertion( "neuroendocrine cell of the prostate") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "prostate neuroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -46720,7 +46914,7 @@ SubClassOf( ObjectSomeValuesFrom( (epithelial cell of prostatic urethra) AnnotationAssertion(Annotation( "PMID:30566875") "An epithelial cell that is part of the prostatic urethra.") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of prostatic urethra") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -46780,6 +46974,7 @@ SubClassOf( "Any serous secreting cell that is part of the tracheobronchial epithelium.") AnnotationAssertion( ) AnnotationAssertion( "2020-05-07T16:03:27Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0019001") AnnotationAssertion( "serous cell of tracheobronchial tree") AnnotationAssertion( ) AnnotationAssertion( ) @@ -46841,6 +47036,7 @@ AnnotationAssertion( ) AnnotationAssertion( "2020-07-21T12:42:48Z"^^xsd:dateTime) AnnotationAssertion( "smooth muscle cell of blood vessel") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "blood vessel smooth muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -46853,14 +47049,17 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( ) AnnotationAssertion( "2020-07-21T12:50:22Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_0019019") AnnotationAssertion( "smooth muscle cell of tracheobronchial tree") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set ACTA2, TAGLN can identify the Human cell type tracheobronchial smooth muscle cell in the Lung with a confidence of 0.69 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "tracheobronchial smooth muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (extrahepatic cholangiocyte) @@ -46903,7 +47102,7 @@ SubClassOf( ObjectSomeValuesFrom( (intestine goblet cell) -AnnotationAssertion(Annotation( "PMID:1996606") Annotation( "PMID:24942678") "Goblet cells reside throughout the length of the small and large intestine and are responsible for the production and maintenance of the protective mucus blanket by synthesizing and secreting high-molecular-weight glycoproteins known as mucins. Human intestinal goblet cells secrete the MUC2 mucin, as well as a number of typical mucus components: CLCA1, FCGBP, AGR2, ZG16, and TFF3.") +AnnotationAssertion(Annotation( "PMID:1996606") Annotation( "PMID:24942678") Annotation( "PMID:33484640") "Goblet cells reside throughout the length of the small and large intestine and are responsible for the production and maintenance of the protective mucus blanket by synthesizing and secreting high-molecular-weight glycoproteins known as mucins. Human intestinal goblet cells secrete the MUC2 mucin, as well as a number of typical mucus components: CLCA1, FCGBP, AGR2, ZG16, and TFF3.") AnnotationAssertion( ) AnnotationAssertion( "2020-10-14T14:59:07Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "PMID:1996606") "intestinal goblet cell") @@ -46913,10 +47112,11 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intestinal tuft cell) -AnnotationAssertion(Annotation( "PMID:22527717") "Any brush cell that is part of the intestinal epithelium.") +AnnotationAssertion(Annotation( "PMID:22527717") Annotation( "PMID:39358509") "Any brush cell that is part of the intestinal epithelium.") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2020-10-15T12:47:46Z"^^xsd:dateTime) @@ -46928,6 +47128,7 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (retrotrapezoid nucleus neuron) @@ -46951,6 +47152,7 @@ SubClassOf( ObjectSomeValuesFrom( (forebrain neuroblast) AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any neuroblast (sensu Vertebrata) that is part of some forebrain.") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "forebrain neuroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -47003,6 +47205,7 @@ AnnotationAssertion(rdfs:label "lung EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiac valve cell) @@ -47019,25 +47222,28 @@ SubClassOf( ObjectSomeValuesFrom( (stomach neuroendocrine cell) -AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any neuroendocrine cell that is part of some stomach.") +AnnotationAssertion(Annotation( "PMID:15153415") "A specialised neuroendocrine cell located in the gastric mucosa that regulates digestive processes including acid secretion and gut motility. This cell stores hormones in large dense core vesicles and synaptic-like microvesicles.") +AnnotationAssertion(Annotation( "PMID:15153415") "DES cell") +AnnotationAssertion(Annotation( "PMID:15153415") "diffuse endocrine system cell") AnnotationAssertion(rdfs:label "stomach neuroendocrine cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) -# Class: (lung neuroendocrine cell) +# Class: (pulmonary neuroendocrine cell) -AnnotationAssertion(Annotation( "PMID:33355253") Annotation( "doi:10.3109/01902148209069653") Annotation( "doi:10.7554/eLife.78216") "A neuroendocrine cell that is part of respiratory epithelium of the lung and is involved in the sensory detection of environmental stimuli, including hypoxia, nicotine and air pressure. Ultrastructurally, this cell type is characterized by the presence of cytoplasmic dense core granules, which are considered the storage sites of amine and peptide hormones. Lung neuroendocrine cells are innervated and appear as solitary cells or as clustered masses, localized at airway bifurcation sites, called neuroepithelial bodies that can release serotonin in response to hypoxia and interact with sensory nerve terminals. Lung neuroendocrine cells also function as reserve stem cells that repair the surrounding epithelium after injury.") +AnnotationAssertion(Annotation( "PMID:33355253") Annotation( "doi:10.3109/01902148209069653") Annotation( "doi:10.7554/eLife.78216") "A neuroendocrine cell that is part of respiratory epithelium of the lung and is involved in the sensory detection of environmental stimuli, including hypoxia, nicotine and air pressure. Ultrastructurally, this cell type is characterized by the presence of cytoplasmic dense core granules, which are considered the storage sites of amine and peptide hormones. Pulmonary neuroendocrine cells are innervated and appear as solitary cells or as clustered masses, localized at airway bifurcation sites, called neuroepithelial bodies that can release serotonin in response to hypoxia and interact with sensory nerve terminals. Pulmonary neuroendocrine cells also function as reserve stem cells that repair the surrounding epithelium after injury.") AnnotationAssertion( ) AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000223") -AnnotationAssertion(Annotation( "PMID:33355253") "pulmonary neuroendocrine cell") +AnnotationAssertion(Annotation( "PMID:15018448") "lung neuroendocrine cell") AnnotationAssertion(Annotation( "PMID:33355253") Annotation( ) "PNEC") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "lung neuroendocrine cell") +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set CHGA, GRP can identify the Human cell type lung neuroendocrine cell in the Lung with a confidence of 0.94 (NS-Forest FBeta value).") +AnnotationAssertion(rdfs:label "pulmonary neuroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -47049,19 +47255,22 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) -# Class: (lung ciliated cell) +# Class: (lung multiciliated epithelial cell) AnnotationAssertion(Annotation( "PMID:27864314") "An epithelial cell that is part of the lung epithelium. This cell is characterised by the presence of cilia on its apical surface.") AnnotationAssertion( ) +AnnotationAssertion( "lung ciliated cell") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "lung ciliated cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +AnnotationAssertion(rdfs:label "lung multiciliated epithelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung secretory cell) @@ -47084,6 +47293,7 @@ SubClassOf( "GOC:tfm") "A smooth muscle cell that is part of the small intestine.") AnnotationAssertion( "FMA:15050") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000275") AnnotationAssertion(Annotation( "FMA:15050") "non-striated muscle fiber of small intestine") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of small intestine") @@ -47099,6 +47309,7 @@ AnnotationAssertion(Annotation( "smooth muscle fiber of duodenum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle fiber of jejunum) @@ -47115,11 +47326,13 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A smooth muscle cell that is part of the ileum.") AnnotationAssertion( "FMA:15066") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000278") AnnotationAssertion(Annotation( "FMA:15066") "non-striated muscle fiber of ileum") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle fiber of ileum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of large intestine) @@ -47144,6 +47357,7 @@ AnnotationAssertion(rdfs:label "smoo EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of cecum) @@ -47206,11 +47420,13 @@ AnnotationAssertion(rdfs:label "smoo EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of urethra) AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell that is part of the urethra.") AnnotationAssertion( "FMA:256165") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000296") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of urethra") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -47253,11 +47469,9 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A fibroblast that is part of the tunica adventitia of artery.") AnnotationAssertion( "FMA:261285") AnnotationAssertion(rdfs:label "fibroblast of tunica adventitia of artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of dense regular elastic tissue) @@ -47322,14 +47536,18 @@ SubClassOf( ObjectSomeValuesFrom( (bronchial goblet cell) AnnotationAssertion(Annotation( "GOC:tfm") "A goblet cell that is part of the epithelium of bronchus.") +AnnotationAssertion( ) AnnotationAssertion( "FMA:263032") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000312") AnnotationAssertion(Annotation( "FMA:263032") "goblet cell of epithelium of bronchus") AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "bronchial goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (gastric goblet cell) @@ -47341,7 +47559,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (gastric cardiac gland goblet cell) @@ -47351,6 +47568,7 @@ AnnotationAssertion( "gastric cardiac gland goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -47361,22 +47579,21 @@ AnnotationAssertion(Annotation( "FMA:263046") AnnotationAssertion( "goblet cell of epithelium of intestinal villus") AnnotationAssertion(rdfs:label "intestinal villus goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (large intestine goblet cell) AnnotationAssertion(Annotation( "GOC:tfm") "A goblet cell that is part of the epithelium of large intestine.") AnnotationAssertion( "FMA:263054") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000320") AnnotationAssertion( "goblet cell of epithelium of large intestine") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "large intestine goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (large intestine crypt goblet cell) @@ -47386,11 +47603,10 @@ AnnotationAssertion( "FMA:263056") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "large intestine crypt goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))) -SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (pancreatic goblet cell) @@ -47403,7 +47619,7 @@ AnnotationAssertion(rdfs:label "panc EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -47416,10 +47632,11 @@ AnnotationAssertion( "pyloric gastric gland goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (duodenal goblet cell) @@ -47429,9 +47646,9 @@ AnnotationAssertion( "goblet cell of epithelium proper of duodenum") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "duodenal goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (jejunal goblet cell) @@ -47442,30 +47659,28 @@ AnnotationAssertion( "goblet cell of epithelium proper of jejunum") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "jejunal goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (ileal goblet cell) AnnotationAssertion(Annotation( "GOC:tfm") "A goblet cell that is part of the epithelium proper of ileum.") AnnotationAssertion( "FMA:263067") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000326") AnnotationAssertion( "goblet cell of epithelium proper of ileum") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ileal goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (tracheal goblet cell) AnnotationAssertion(Annotation( "GOC:tfm") "A goblet cell that is part of the epithelium of trachea.") AnnotationAssertion( ) AnnotationAssertion( "FMA:263075") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000329") AnnotationAssertion(Annotation( "FMA:263075") "goblet cell of epithelium of trachea") AnnotationAssertion( ) AnnotationAssertion( ) @@ -47481,6 +47696,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A serous secreting cell that is part of the epithelium of trachea.") AnnotationAssertion( ) AnnotationAssertion( "FMA:263078") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000330") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "serous cell of epithelium of trachea") @@ -47493,6 +47709,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A serous secreting cell that is part of the epithelium of bronchus.") AnnotationAssertion( ) AnnotationAssertion( "FMA:263080") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000331") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "serous cell of epithelium of bronchus") @@ -47515,6 +47732,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A basal cell that is part of the epithelium of trachea.") AnnotationAssertion( ) AnnotationAssertion( "FMA:263118") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000348") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "basal cell of epithelium of trachea") @@ -47527,6 +47745,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A basal cell found in the bronchus epithelium.") AnnotationAssertion( ) AnnotationAssertion( "FMA:263120") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000349") AnnotationAssertion( "basal cell of bronchus") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "basal cell of epithelium of bronchus") @@ -47687,6 +47906,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "BTO:000125") AnnotationAssertion( "FMA:62911") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000398") AnnotationAssertion(Annotation( "PMID:30348985") "LSEC") AnnotationAssertion(Annotation( "FMA:62911") "endotheliocyte of hepatic sinusoid") AnnotationAssertion(Annotation( "PMID:30348985") "liver sinusoidal endothelial cell") @@ -47708,6 +47928,7 @@ AnnotationAssertion(Annotation( "GOC:pr") "sinoatrial node cell") AnnotationAssertion( "sinoatrial node myocyte") AnnotationAssertion(Annotation( "FMA:67102") "sinuatrial node myocyte") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "myocyte of sinoatrial node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -47948,6 +48169,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A smooth muscle cell that is part of the ciliary body.") AnnotationAssertion( "FMA:70610") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000443") AnnotationAssertion(Annotation( "FMA:70610") "smooth muscle cell of ciliary body") AnnotationAssertion( ) AnnotationAssertion( ) @@ -48004,6 +48226,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "An epithelial cell that is part of the nephron.") AnnotationAssertion( "FMA:70965") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000449") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of nephron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -48092,6 +48315,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "CALOHA:TS-2374") AnnotationAssertion( "FMA:72144") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000458") AnnotationAssertion(Annotation( "FMA:72144") "skin melanocyte") AnnotationAssertion( ) AnnotationAssertion( ) @@ -48202,6 +48426,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:tfm") "A smooth muscle cell that is part of the prostate gland.") AnnotationAssertion( ) AnnotationAssertion( "FMA:84583") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000487") AnnotationAssertion(Annotation( "FMA:84583") "smooth muscle fiber of prostate") AnnotationAssertion( ) AnnotationAssertion( ) @@ -48295,11 +48520,10 @@ AnnotationAssertion( "FMA:86929") "small intestinal goblet cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "small intestine goblet cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney cell) @@ -48552,12 +48776,12 @@ SubClassOf( ObjectSomeValuesFrom( (ureter urothelial cell) -AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any urothelial cell that is part of some urothelium of ureter.") +AnnotationAssertion(Annotation( "PMID:36180582") "A urothelial cell that is part of the urothelium of ureter.") AnnotationAssertion( "KUPO:0001117") AnnotationAssertion(rdfs:label "ureter urothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -48654,6 +48878,7 @@ SubClassOf( ObjectSomeValuesFrom( "FBC:Autogenerated") "Any epithelial cell of proximal tubule that is part of some proximal convoluted tubule and has part some brush border.") AnnotationAssertion( "KUPO:0001045") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000838") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney proximal convoluted tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) @@ -48665,6 +48890,7 @@ SubClassOf( ObjectSomeValuesFrom( "FBC:Autogenerated") "Any epithelial cell of proximal tubule that is part of some proximal straight tubule.") AnnotationAssertion( "KUPO:0001046") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000839") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney proximal straight tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -48678,6 +48904,7 @@ SubClassOf( ObjectSomeValuesFrom( "FBC:Autogenerated") "Any epithelial cell of distal tubule that is part of some distal convoluted tubule.") AnnotationAssertion( ) AnnotationAssertion( "KUPO:0001056") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000849") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -48691,6 +48918,7 @@ SubClassOf( ObjectSomeValuesFrom( "FBC:Autogenerated") "Any epithelial cell of distal tubule that is part of some macula densa.") AnnotationAssertion( ) AnnotationAssertion( "KUPO:0001057") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1000850") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "macula densa epithelial cell") @@ -48782,6 +49010,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:16990493") Annotation( "PMID:22733355") Annotation( "PMID:24066938") Annotation( "PMID:25834230") "An endothelial cell which is part of the afferent arteriole in the kidney. This cell is responsible for maintaining renal blood flow and glomerular filtration rate.") AnnotationAssertion( "KUPO:0001038") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1001006") AnnotationAssertion(rdfs:label "kidney afferent arteriole cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -48792,6 +49021,7 @@ SubClassOf( ObjectSomeValuesFrom( "FBC:Autogenerated") "Any kidney arterial blood vessel cell that is part of some renal efferent arteriole.") AnnotationAssertion( "KUPO:0001041") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1001009") AnnotationAssertion(rdfs:label "kidney efferent arteriole cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -48814,6 +49044,7 @@ SubClassOf( ObjectSomeValuesFrom( "FBC:Autogenerated") "Any kidney loop of Henle epithelial cell that is part of some descending limb of loop of Henle.") AnnotationAssertion( "KUPO:0001053") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1001021") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney loop of Henle descending limb epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -48840,7 +49071,6 @@ AnnotationAssertion(Annotation( "KUPO:0001068") AnnotationAssertion(rdfs:label "vasa recta cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -49008,7 +49238,6 @@ AnnotationAssertion( "inner renal medulla vasa recta cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -49019,7 +49248,6 @@ AnnotationAssertion( "outer renal medulla vasa recta cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -49192,6 +49420,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "KUPO:0001121") AnnotationAssertion( "NCIT:C32210") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1001428") AnnotationAssertion( "bladder transitional cell") AnnotationAssertion( "transitional epithelial cell of urinary bladder") AnnotationAssertion( ) @@ -49205,12 +49434,13 @@ SubClassOf( ObjectSomeValuesFrom( (urethra urothelial cell) -AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any urothelial cell that is part of some urethra urothelium.") +AnnotationAssertion(Annotation( "PMID:23589830") Annotation( "PMID:36180582") "A urothelial cell that is part of the urethra urothelium. This cell plays a crucial role in maintaining the urethral barrier function, protecting against toxic substances in urine, sensing environmental changes, and defending against pathogen entry.") AnnotationAssertion( "KUPO:0001124") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1001430") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "urethra urothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -49247,20 +49477,22 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:18603310") "A neuron residing in the olfactory bulb that serve to process and refine signals arising from olfactory sensory neurons") AnnotationAssertion(rdfs:label "olfactory bulb interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (sensory neuron of dorsal root ganglion) AnnotationAssertion(Annotation( "MP:0004297") "A sensory neuron of the dorsal root ganglia that senses body position and sends information about how much the muscle is stretched to the spinal cord.") AnnotationAssertion(Annotation( "MP:0004297") "proprioceptive neuron") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sensory neuron of dorsal root ganglion") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -49277,10 +49509,8 @@ SubClassOf( ObjectSomeValuesFrom( "MP:0009955") "The principal glutaminergic neuron located in the outer third of the external plexiform layer of the olfactory bulb; a single short primary dendrite traverses the outer external plexiform layer and terminates within an olfactory glomerulus in a tuft of branches, where it receives the input from olfactory receptor neuron axon terminals; axons of the tufted cells transfer information to a number of areas in the brain, including the piriform cortex, entorhinal cortex, olfactory tubercle, and amygdala.") AnnotationAssertion(rdfs:label "olfactory bulb tufted cell") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (parvocellular neurosecretory cell) @@ -49297,27 +49527,31 @@ SubClassOf( ObjectSomeValuesFrom( (intestinal enteroendocrine cell) AnnotationAssertion(Annotation( "MP:0010802") "The various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the intestinal tract.") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1001516") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal enteroendocrine cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stomach enteroendocrine cell) AnnotationAssertion(Annotation( "MP:0010803") "The various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the stomach.") AnnotationAssertion(rdfs:label "stomach enteroendocrine cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung endothelial cell) AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any endothelial cell of vascular tree that is part of some lung.") AnnotationAssertion( "endothelial cell of lung") AnnotationAssertion( "pulmonary vessel endothelial cell") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lung endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -49491,7 +49725,7 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1261") "lateral ventricle neuronal cells") AnnotationAssertion(rdfs:label "lateral ventricle neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (mammary gland glandular cell) @@ -49509,15 +49743,16 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (uterine cervix glandular cell) +# Class: (uterine cervix secretory cell) AnnotationAssertion(Annotation( "NPX:PDR") "Glandular cell of uterine cervix epithelium.") AnnotationAssertion( "CALOHA:TS-1273") AnnotationAssertion(Annotation( "CALOHA:TS-1273") "cervix glandular cell") AnnotationAssertion(Annotation( "CALOHA:TS-1273") "cervix, uterine glandular cell") AnnotationAssertion(Annotation( "CALOHA:TS-1273") "cervix, uterine glandular cells") -AnnotationAssertion(rdfs:label "uterine cervix glandular cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +AnnotationAssertion( "uterine cervix glandular cell") +AnnotationAssertion(rdfs:label "uterine cervix secretory cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -49533,42 +49768,43 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (duodenum glandular cell) +# Class: (duodenum secretory cell) AnnotationAssertion(Annotation( "NPX:PDR") "Glandular cell of duodenal epithelium. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Brunner's gland cell.") AnnotationAssertion( "CALOHA:TS-1275") -AnnotationAssertion(Annotation( "CALOHA:TS-1275") "duodenum glandular cells") +AnnotationAssertion(Annotation( "CALOHA:TS-1275") "duodenum glandular cells") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "duodenum glandular cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +AnnotationAssertion(rdfs:label "duodenum secretory cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (epididymis glandular cell) +# Class: (epididymis secretory cell) AnnotationAssertion(Annotation( "NPX:PDR") "Glandular cell of epididymal epithelium.") AnnotationAssertion( "CALOHA:TS-1276") AnnotationAssertion(Annotation( "CALOHA:TS-1276") "epididymal glandular cell") -AnnotationAssertion(Annotation( "CALOHA:TS-1276") "epididymis glandular cells") -AnnotationAssertion(rdfs:label "epididymis glandular cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +AnnotationAssertion(Annotation( "CALOHA:TS-1276") "epididymis glandular cell") +AnnotationAssertion(rdfs:label "epididymis secretory cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (oviduct glandular cell) +# Class: (oviduct secretory cell) AnnotationAssertion(Annotation( "HPA:HPA") Annotation( "NPX:PDR") "Glandular cell of oviduct epithelium. Example: peg cells, ciliated cells.") AnnotationAssertion( "CALOHA:TS-1277") AnnotationAssertion(Annotation( "CALOHA:TS-1277") "fallopian tube glandular cell") AnnotationAssertion(Annotation( "CALOHA:TS-1277") "fallopian tube glandular cells") +AnnotationAssertion( "oviduct glandular cell") AnnotationAssertion(Annotation( "CALOHA:TS-1277") "uterine tube glandular cell") -AnnotationAssertion(rdfs:label "oviduct glandular cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +AnnotationAssertion(rdfs:label "oviduct secretory cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -49588,16 +49824,15 @@ SubClassOf( ObjectSomeValuesFrom( (parathyroid glandular cell) -AnnotationAssertion(Annotation( "HPA:HPA") Annotation( "NPX:PDR") "Glandular cell of parathyroid epithelium. Example: Parathyroid chief cell and parathyroid oxyphil cells.") +AnnotationAssertion(Annotation( "HPA:HPA") Annotation( "NPX:PDR") "Glandular (secretory) cell of parathyroid epithelium.") AnnotationAssertion( "CALOHA:TS-1279") AnnotationAssertion(Annotation( "CALOHA:TS-1279") "parathyroid gland glandular cell") AnnotationAssertion(Annotation( "CALOHA:TS-1279") "parathyroid gland glandular cells") AnnotationAssertion(rdfs:label "parathyroid glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (rectum glandular cell) @@ -49640,18 +49875,18 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (small intestine glandular cell) +# Class: (small intestine secretory cell) AnnotationAssertion(Annotation( "NCI_Thesaurus:Small_Intestinal_Glandular_Cell") Annotation( "NPX:PDR") "A glandular cell found in the epithelium of the small intestine. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Somatostatin-secreting Cells (D-cells) .") AnnotationAssertion( "CALOHA:TS-1286") AnnotationAssertion( "FMA:86928") +AnnotationAssertion(Annotation( "CALOHA:TS-1286") "small intestinal glandular cell") AnnotationAssertion(Annotation( "CALOHA:TS-1286") "small bowel glandular cell") -AnnotationAssertion(Annotation( "CALOHA:TS-1286") "small intestinal glandular cell") AnnotationAssertion(Annotation( "CALOHA:TS-1286") "small intestine glandular cells") -AnnotationAssertion(rdfs:label "small intestine glandular cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +AnnotationAssertion(rdfs:label "small intestine secretory cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -49690,6 +49925,7 @@ SubClassOf( ObjectSomeValuesFrom( "NPX:PDR") "A distinct endothelial cell forming the walls of the capillaries within the cerebral cortex.") AnnotationAssertion( "CALOHA:TS-2372") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1001602") AnnotationAssertion(Annotation( "CALOHA:TS-2372") "cerebral cortex endothelial cells") AnnotationAssertion(Annotation( "CALOHA:TS-2372") "endothelial cells of cerebral cortex") AnnotationAssertion( ) @@ -49705,6 +49941,7 @@ SubClassOf( ObjectSomeValuesFrom( "HPA:HPA") Annotation( "NPX:PDR") "Circulating macrophages and tissue macrophages (alveolar macrophages) of lung.") AnnotationAssertion( "CALOHA:TS-0576") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_1001603") AnnotationAssertion(Annotation( "CALOHA:TS-0576") "lung macrophages") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lung macrophage") @@ -49779,6 +50016,16 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (secretory epithelial cell) + +AnnotationAssertion(Annotation( ) "An epithelial cell that is specialised for the synthesis and secretion of specific biomolecules.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-07-21T09:24:44Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "secretory epithelial cell"@en) +EquivalentClasses( ObjectIntersectionOf( )) +SubClassOf( ) +SubClassOf( ) + # Class: (epidermal melanocyte) AnnotationAssertion(Annotation( "GOC:TermGenie") "Any melanocyte that is part of a epidermis.") @@ -49813,8 +50060,10 @@ AnnotationAssertion( AnnotationAssertion( "BTO:0002770") AnnotationAssertion( "BTO:0005756") AnnotationAssertion( "NCIT:C32429") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_2000002") AnnotationAssertion(Annotation( "BTO:0002770") Annotation( "NCIT:C32429") "decidua cell") AnnotationAssertion(Annotation( "BTO:0005756") Annotation( "PMID:11719592") "decidual stromal cell") +AnnotationAssertion(Annotation( "PMID:31907034") "decidualized endometrial stromal cell") AnnotationAssertion( "CL:2000002") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "decidual cell") @@ -49877,6 +50126,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2014-06-04T15:07:42Z"^^xsd:dateTime) AnnotationAssertion( "CL:2000008") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -49899,6 +50149,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:TermGenie") "Any endothelial cell of lymphatic vessel that is part of a dermis.") AnnotationAssertion( ) AnnotationAssertion( "2014-06-04T15:15:08Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_2000011") AnnotationAssertion( "CL:2000011") AnnotationAssertion(rdfs:label "dermis lymphatic vessel endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -50015,6 +50266,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:TermGenie") "Any native cell that is part of a sebaceous gland.") AnnotationAssertion( ) AnnotationAssertion( "2014-06-24T23:17:00Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_2000021") AnnotationAssertion( "CL:2000021") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sebaceous gland cell") @@ -50077,7 +50329,6 @@ AnnotationAssertion( "cerebellum basket cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -50110,6 +50361,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2014-06-25T01:17:50Z"^^xsd:dateTime) AnnotationAssertion( "CL:2000030") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hypothalamus cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -50123,9 +50375,10 @@ AnnotationAssertion( "2014-06-25T01:17:57Z"^^xsd:dateTime) AnnotationAssertion( "CL:2000031") AnnotationAssertion(rdfs:label "lateral line ganglion neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (peripheral nervous system neuron) @@ -50239,6 +50492,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:TermGenie") "Any cardiac muscle cell that is part of a cardiac ventricle.") AnnotationAssertion( ) AnnotationAssertion( "2014-08-12T20:50:28Z"^^xsd:dateTime) +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_2000046") AnnotationAssertion( "CL:2000046") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ventricular cardiac muscle cell") @@ -50252,6 +50506,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2014-10-02T23:52:53Z"^^xsd:dateTime) AnnotationAssertion( "CL:2000047") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brainstem motor neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -50371,6 +50626,7 @@ AnnotationAssertion( "2014-10-07T17:48:27Z"^^xsd:dateTime) AnnotationAssertion( "BTO:0006119") AnnotationAssertion( "BTO:0006208") +AnnotationAssertion( "https://cellxgene.cziscience.com/cellguide/CL_2000060") AnnotationAssertion(Annotation( "PMID:31049600") "vCTB") AnnotationAssertion( "villous cytotrophoblast") AnnotationAssertion( "CL:2000060") @@ -50423,6 +50679,7 @@ AnnotationAssertion(rdfs:comment "ht AnnotationAssertion(rdfs:label "ovarian fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (ovarian surface epithelial cell) @@ -50653,6 +50910,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2014-12-02T19:28:38Z"^^xsd:dateTime) AnnotationAssertion( "CL:2000084") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "conjunctiva goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -50734,7 +50992,6 @@ AnnotationAssertion( "dentate gyrus of hippocampal formation stellate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -50813,24 +51070,13 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ciliated epithelial cell of esophagus) - -AnnotationAssertion(Annotation( "GOC:CellBLAST") Annotation( "PMID:29802404") "A ciliated epithelial cell of the esophagus.") -AnnotationAssertion( ) -AnnotationAssertion( "2019-02-09T16:40:30Z"^^xsd:dateTime) -AnnotationAssertion( "CL:3000000") -AnnotationAssertion(rdfs:label "ciliated epithelial cell of esophagus") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (peripheral sensory neuron) -AnnotationAssertion(Annotation( "GOC:CellBLAST") Annotation( "PMID:30096314") "Peripheral sensory neuron.") +AnnotationAssertion(Annotation( "GOC:CellBLAST") Annotation( "PMID:30096314") Annotation( "PMID:31554486") Annotation( "PMID:35858549") Annotation( "Wikipedia:Sensory_neuron") Annotation( "https://www.britannica.com/science/sensory-neuron") Annotation( "https://www.ncbi.nlm.nih.gov/books/NBK539846/") "A neuron type that is located in a peripheral nervous system and it transmits sensory information from the peripheral (PNS) to the central nervous system (CNS). A sensory neuron converts physical (light, sound, touch) or chemical (such as taste and smell) stimuli into an electrical signal through a process known as sensory transduction. The function of a sensory neuron is to carry informations from the external environment and internal body conditions to the central nervous system for further processing.") AnnotationAssertion( ) AnnotationAssertion( "2019-02-25T19:34:33Z"^^xsd:dateTime) AnnotationAssertion( "CL:3000004") +AnnotationAssertion(Annotation( "Wikipedia:Sensory_neuron") rdfs:comment "Typically, a sensory neuron has a pseudounipolar morphology.") AnnotationAssertion(rdfs:label "peripheral sensory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -50866,7 +51112,7 @@ AnnotationAssertion( "PMID:10377350") "LGE-derived neuron") AnnotationAssertion(rdfs:label "lateral ganglionic eminence derived neuron"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (amygdala excitatory neuron) @@ -50879,7 +51125,7 @@ AnnotationAssertion(Annotation( "amygdala excitatory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -50892,7 +51138,6 @@ AnnotationAssertion( "DOI:10.1101/2022.10.12.511898") rdfs:comment "A GABAergic interneuron whose soma is located in the cerebellar cortex.") AnnotationAssertion(rdfs:label "cerebellar inhibitory GABAergic interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -50935,18 +51180,21 @@ AnnotationAssertion( "caudal ganglionic eminence derived cortical interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (thalamic excitatory neuron) -AnnotationAssertion(Annotation( "DOI:10.1101/2022.10.12.511898") "An excitatory neuron that has its soma located in the thalamic complex.") +AnnotationAssertion(Annotation( "PMID:30083593") Annotation( "PMID:31196673") Annotation( "PMID:35278647") Annotation( "PMID:37163009") Annotation( "PMID:37824663") Annotation( "PMID:38739251") "An excitatory neuron that has its soma located in the thalamic complex. This neuron type can be involved in a series of circuits related to sensory integration, motor integration, pain processing, social behaviour and reward response.") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion(Annotation( "PMID:11532718") Annotation( "PMID:30083593") Annotation( "PMID:38739251") rdfs:comment "Abnormalities in glutametergic neurons of the thalamic complex are associated with pathologies such as schizophrenia, colorectal visceral pain and Parkinson's disease.") AnnotationAssertion(rdfs:label "thalamic excitatory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -50968,6 +51216,7 @@ SubClassOf( ObjectSomeValuesFrom( "DOI:10.1101/2022.10.12.511898") "A cell that is part of the brain vasculature.") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brain vascular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -50983,7 +51232,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mammillary body neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (midbrain-derived inhibitory neuron) @@ -50994,7 +51243,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "midbrain-derived inhibitory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -51015,7 +51264,7 @@ AnnotationAssertion( "amygdala pyramidal neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebral cortex pyramidal neuron) @@ -51034,6 +51283,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "FMA:62364") AnnotationAssertion( "cochlear hair cell") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cochlea auditory hair cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -51051,14 +51301,27 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (unipolar brush cell) + +AnnotationAssertion(Annotation( "PMID:9193142") Annotation( "WikipediaVersioned:Unipolar_brush_cell&oldid=1045937026") "An excitatory glutamatergic interneuron found in the granular layer of the cerebellar cortex and also in the granule cell domain of the cochlear nucleus. Unipolar brush cells have a round or oval cell body with usually a single short dendrite that ends in a brush-like tuft of short dendrites unique to them known as dendrioles.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "unipolar brush cell") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (somatosensory neuron) AnnotationAssertion(Annotation( "PMID:22865660") "A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "somatosensory neuron") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pulmonary capillary endothelial cell) @@ -51188,6 +51451,7 @@ AnnotationAssertion( "PMID:25311230") Annotation( "PMID:30796046") Annotation( ) "VIC") AnnotationAssertion( "cardiac valve interstitial cell") AnnotationAssertion(Annotation( "PMID:25311230") "valvular interstitial cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(Annotation( "PMID:25311230") rdfs:comment "Activated valve interstitial cells undergo continual turn over into deactivated fibroblasts and other cell fates (such as apoptosis).") AnnotationAssertion(rdfs:label "valve interstitial cell") @@ -51204,6 +51468,7 @@ AnnotationAssertion(Annotation( "2022-12-09T11:58:49Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "PMID:25311230") Annotation( "PMID:30796046") Annotation( ) "VEC") AnnotationAssertion(Annotation( "PMID:25311230") "valvular endothelial cell") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "PMID:25311230") rdfs:comment "At least in some mammalian species, a valve endothelial cell expresses CD31. Valve endothelial cells can undergo an endothelial to mesenchymal transition to acquire a fibroblast or myofibroblast phenotype that leads to changes in the microenvironmental signals and facilitates tissue regeneration.") AnnotationAssertion(rdfs:label "valve endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -51211,16 +51476,22 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (respiratory ciliated cell) +# Class: (respiratory tract multiciliated cell) -AnnotationAssertion(Annotation( "PMID:18757316") Annotation( "PMID:21364219") "A ciliated cell of the respiratory system. Ciliated cells are present in airway epithelium.") +AnnotationAssertion(Annotation( "PMID:18757316") Annotation( "PMID:21364219") Annotation( "PMID:34044844") Annotation( "PMID:37834236") "A multiciliated epithelial cell located in the respiratory tract epithelium, characterized by a columnar shape and motile cilia on its apical surface. This cell develops through a highly orchestrated process, transitioning from a basal progenitor via an intermediate deuterosomal cell stage that generates centrioles essential for ciliogenesis.") AnnotationAssertion( "2023-01-25T11:06:01Z"^^xsd:dateTime) AnnotationAssertion( "ciliated cell of the respiratory tract") -AnnotationAssertion(rdfs:label "respiratory ciliated cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) +AnnotationAssertion( "respiratory ciliated cell") +AnnotationAssertion( "respiratory multiciliated cell") +AnnotationAssertion(rdfs:label "respiratory tract multiciliated cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dental pulp stem cell) @@ -51239,6 +51510,7 @@ AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-1425-877X") AnnotationAssertion( "2023-10-13T11:22:42Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "PMID:24183650") Annotation( ) "UB cell") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ureteric bud cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -51271,6 +51543,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "neuroendocrine cell of epithelium of crypt of Lieberkuhn") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -51293,12 +51566,15 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:5487122") Annotation( "PMID:9651178") "A(n) serous secreting cell that is part of a(n) bronchus submucosal gland.") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set PRR4, C6orf58 can identify the Human cell type serous secreting cell of bronchus submucosal gland in the Lung with a confidence of 0.75 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "serous secreting cell of bronchus submucosal gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of efferent lymphatic vessel) @@ -51364,6 +51640,7 @@ AnnotationAssertion( "smooth muscle cell of large intestine smooth muscle circular layer") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of large intestine smooth muscle longitudinal layer) @@ -51373,6 +51650,7 @@ AnnotationAssertion( "smooth muscle cell of large intestine smooth muscle longitudinal layer") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (suprabasal keratinocyte) @@ -51380,6 +51658,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:35883599") Annotation( "PMID:9520465") Annotation( "https://www.proteinatlas.org/humanproteome/single+cell+type/squamous+epithelial+cells#suprabasalkeratinocytes") "A keratinocyte of the epidermis suprabasal layer. This cell may express the differentiation markers keratin 10 and keratin 1.") AnnotationAssertion( ) AnnotationAssertion( "2023-02-02T11:17:04Z"^^xsd:dateTime) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "suprabasal keratinocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -51391,6 +51670,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "2023-03-02T14:38:32Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "PMID:33796062") Annotation( ) "retinal astroglia") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(Annotation( "PMID:32555229") Annotation( "PMID:33796062") rdfs:comment "In response to elevated intraocular pressure, a retinal astrocyte may modulate extracellular matrix remodeling. In the human retina, a retinal astrocyte is GFAP-positive, SOD3-positive and GYPC-positive.") AnnotationAssertion(rdfs:label "retinal astrocyte") @@ -51470,11 +51750,13 @@ AnnotationAssertion( "2023-03-16T15:12:52Z"^^xsd:dateTime) AnnotationAssertion(Annotation( "PMID:5487122") "bronchial gland mucous cell") AnnotationAssertion( ) +AnnotationAssertion(Annotation( "https://doi.org/10.5281/zenodo.11165918") rdfs:comment "The marker set BPIFB2 can identify the Human cell type mucus secreting cell of bronchus submucosal gland in the Lung with a confidence of 0.93 (NS-Forest FBeta value).") AnnotationAssertion(rdfs:label "mucus secreting cell of bronchus submucosal gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mucus secreting cell of tracheobronchial tree submucosal gland) @@ -51483,12 +51765,27 @@ AnnotationAssertion( "2023-04-20T10:55:50Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "mucus secreting cell of tracheobronchial tree submucosal gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (deuterosomal cell) + +AnnotationAssertion(Annotation( "PMID:31558434") Annotation( "PMID:331922198") Annotation( "PMID:36883528") Annotation( "PMID:37291214") "An epithelial cell part of respiratory tract epithelium that is a precursor of a multi-ciliated cell. This cell actively amplifies centrioles, a required step for multiciliogenesis.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2023-06-20T10:27:17Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(Annotation( "PMID:31558434") Annotation( "PMID:331922198") Annotation( "PMID:36883528") rdfs:comment "In humans, deuterosomal cells have been noted to have enriched expression of the following: PLK4, FOXJ1, DEUP1, FOXN4, YPEL1, HES6 and CDC20B. Deuterosomal cells were termed after deuterosomes, the platforms of active centriole amplification.") +AnnotationAssertion(rdfs:label "deuterosomal cell") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (taste receptor cell of tongue) AnnotationAssertion(Annotation( "DOI:10.1111/j.1096-3642.1981.tb01137.x") Annotation( "PMID:10052456") Annotation( "PMID:28655883") Annotation( "http://www.nejohnston.org/Birds/documents/AvianTongues_Johnston.pdf") "A taste receptor cell that is part of a taste bud of a tongue.") @@ -51498,15 +51795,16 @@ AnnotationAssertion(Annotation( "taste receptor cell of tongue") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (catecholaminergic neuron) AnnotationAssertion(Annotation( "ISBN:0521442516") Annotation( "PMID:12094209") "A neuron that releases catecholamine as a neurotransmitter.") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2023-05-18T12:07:45Z"^^xsd:dateTime) +AnnotationAssertion( ) AnnotationAssertion(Annotation( "PMID:10191060") Annotation( "PMID:12128258") Annotation( "PMID:34880760") Annotation( "https://orcid.org/0000-0002-2244-7917") rdfs:comment "Frequently used when describing the developing nervous system in zebrafish. A catecholaminergic neuron expresses tyrosine hydroxylase (TH), tyrosine hydroxylase 2 (TH2), aromatic amino acid decarboxylase (AADC), dopamine b-hydroxylase (DBH), and phenylethanolamine-N-methyl transferase (PEMT), which are enzymes necessary for catecholamine synthesis.") AnnotationAssertion(rdfs:label "catecholaminergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -51519,6 +51817,7 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:24928499") Annotation( "PMID:27889329") "A cell that is adjacent to a vessel. A perivascular cell plays a crucial role in maintaining vascular function and tissue homeostasis. This cell type regulates vessel integrity and flow dynamics.") AnnotationAssertion( ) AnnotationAssertion( "2023-08-22T13:40:28Z"^^xsd:dateTime) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "perivascular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -51541,6 +51840,7 @@ AnnotationAssertion(Annotation( "https://orcid.org/0000-0001-6677-8489") Annotation( ) "LASP") AnnotationAssertion(Annotation( "doi:10.1101/2023.04.21.537845") Annotation( ) "LP") AnnotationAssertion(Annotation( "PMID:37380767") Annotation( ) "LumSec") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "luminal adaptive secretory precursor cell of mammary gland") SubClassOf( ) SubClassOf( ) @@ -51616,6 +51916,36 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (placental resident macrophage) + +AnnotationAssertion(Annotation( "PMID:39007150") "A tissue-resident macrophage that is part of the placenta. This cell helps preventing immunological rejection of the fetus by modulating the immune environment. A placental resident macrophage has high plasticity to adapt to the changing needs of each phase of pregnancy.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2024-10-31T10:24:21Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:39007150") "placental macrophage") +AnnotationAssertion(rdfs:label "placental resident macrophage") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (limbal epithelial stem cell of cornea) + +AnnotationAssertion(Annotation( "PMID:20614614") Annotation( "PMID:29105366") Annotation( "PMID:36983561") Annotation( "PMID:37768272") "A stem cell that is part of the corneo-scleral limbus. This cell type resides at the basal layer of the epithelium and has a small size and high nuclear to cytoplasmatic ratio (Secker and Daniels, 2009). A limbal stem cell is responsible for corneal epithelial renewal and repair (Li et al., 2023), and to help maintain a clear corneal surface by preventing conjunctival epithelial cells from migrating onto the cornea (Wang et al., 2023).") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:59:19Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:20614614") "limbal epithelial stem cell") +AnnotationAssertion(Annotation( "PMID:17562792") "limbal stem cell") +AnnotationAssertion(Annotation( "PMID:20614614") Annotation( ) "LESC") +AnnotationAssertion(Annotation( "PMID:36983561") Annotation( ) "LSC") +AnnotationAssertion(rdfs:label "limbal epithelial stem cell of cornea") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (enteroglial cell) AnnotationAssertion(Annotation( "PMID:16336493") Annotation( "PMID:17483847") Annotation( "PMID:25975510") "Glial cell that provides support to the enteric nervous system. It is involved in enteric neurotransmission, in maintaining the integrity of the mucosal barrier of the gut and serves as a link between the nervous and immune systems of the gut. In enteric nerve strands, glial processes ensheath multiaxonal bundles which distinguishes enteric glia from all other peripheral glia. Ultrastructurally, the most conspicuous trait of an enteroglial cell is the presence of 10 nm filaments, which criss-cross the cell body, form axial bundles in the processes and appear to firmly anchor the cells to the ganglionic surfaces. Similar to astrocytes, their main constituent is glial fibrillary acidic protein (GFAP).") @@ -51639,7 +51969,7 @@ AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-0819-0473") "fetal pre-type 2 pneumocyte") AnnotationAssertion(Annotation( "PMID:12114192") "fetal pre-type II alveolar epithelial cell") AnnotationAssertion( "fetal pre-type II pneumocyte") -AnnotationAssertion( "According to PMID:1316350 this cell type does not yet produce surfactant. According to PMID:9109447 and PMID:12114192 this cell type produces low levels of surfactant that can be increased by administration of very low-density lipoproteins. This cell type is of medical relevance, as a central feature of the fetal respiratory distress syndrome seems to be the presence in the lung of abundant pre-type II alveolar epithelial cells (PMID:1316350).") +AnnotationAssertion(rdfs:comment "According to PMID:1316350 this cell type does not yet produce surfactant. According to PMID:9109447 and PMID:12114192 this cell type produces low levels of surfactant that can be increased by administration of very low-density lipoproteins. This cell type is of medical relevance, as a central feature of the fetal respiratory distress syndrome seems to be the presence in the lung of abundant pre-type II alveolar epithelial cells (PMID:1316350).") AnnotationAssertion(rdfs:label "fetal pre-type II pulmonary alveolar epithelial cell") SubClassOf( ) @@ -51668,6 +51998,91 @@ AnnotationAssertion(Annotation( "border associated macrophage"@en) SubClassOf( ) +# Class: (caudal ganglionic eminence derived neuron) + +AnnotationAssertion(Annotation( "PMID:12593982") Annotation( "PMID:12637172") Annotation( "PMID:20130169") Annotation( "https://www.ncbi.nlm.nih.gov/books/NBK98190/") "A neuron of the central nervous system that develops from a caudal ganglionic eminence.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-11-14T11:27:25Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:12593982") Annotation( "PMID:12637172") Annotation( "PMID:20130169") Annotation( "https://www.ncbi.nlm.nih.gov/books/NBK98190/") rdfs:comment "Neurons derived from the caudal ganglionic eminence consist mostly of neurons populating the cortical layers of the brain and some subcortical areas such as the globus pallidus, the striatus and the hippocampus. Amongst neurons derived from the caudal ganglionic eminence there are cortical GABAergic neurons such as Pax6, Lamp5, VIP, sncg, GABAergic; in the hippocampus, mossy fibers, pyramidal neurons, granule neurons and interneurons; in the striatum and globus pallidus, medium spiny projection neurons.") +AnnotationAssertion(rdfs:label "caudal ganglionic eminence derived neuron"@en) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (transit amplifying cell of gut) + +AnnotationAssertion(Annotation( "PMID:20683682") Annotation( "PMID:33195268") Annotation( "PMID:34497389") "A transit amplifying cell of the gut epithelium, located in the wall of the intestinal crypt, just above intestinal stem cells from which they derive. These are rapidly dividing cells, capable of multiple rounds of division before differentiating into the various cell types of the gut epithelium (enterocyte, goblet, eneterodendocrine, paneth cells).") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-24T10:48:47Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:24813615") "transit-amplifying cell") +AnnotationAssertion(Annotation( "PMID:20683682") "TA cell") +AnnotationAssertion(rdfs:label "transit amplifying cell of gut"@en) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (intestinal lamina propria fibroblast) + +AnnotationAssertion(Annotation( "PMID:21252048") Annotation( "PMID:36032088") "A fibroblast located in the lamina propria of the intestinal mucosa. This cell expresses PDGFRα and CD81 and is negative for α-smooth muscle actin (α-SMA). This cell is predominantly located in the small intestine adjacent to myofibroblasts surrounding the crypts. It is capable of synthesizing extracellular matrix components and structural proteins such as collagen and elastin.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-24T15:45:18Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:30270042") "S1 fibroblast") +AnnotationAssertion(rdfs:label "intestinal lamina propria fibroblast"@en) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (type G cell of stomach) + +AnnotationAssertion(Annotation( "FBC:Autogenerated") "Any type G enteroendocrine cell that is part of some epithelium of stomach.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-10-24T10:43:22Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "type G cell of stomach"@en) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (liver-resident natural killer cell) + +AnnotationAssertion(Annotation( "PMID:26330348") Annotation( "PMID:26639736") Annotation( "PMID:27798170") Annotation( "PMID:31114585") Annotation( "PMID:32351704") Annotation( "PMID:34230995") Annotation( "PMID:35865550") "A natural killer cell resident to the liver, located in the hepatic sinusoids. In humans this cell type is distinguished from circulating natural killer cells by CD49a or CD69 gene expression. Liver-resident natural killer cells have also been shown to express CCR5, EOMES, KLRB1, GZMK, and CXCR6 in humans.") +AnnotationAssertion( ) +AnnotationAssertion( "https://orcid.org/0000-0001-8134-3037") +AnnotationAssertion( "2024-07-29T13:43:11Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:31114585") "he-NK") +AnnotationAssertion(Annotation( "doi:10.3389/fimmu.2019.00946") "hepatic NK") +AnnotationAssertion(Annotation( "doi:10.3389/fimmu.2019.00946") "hepatic natural killer cells") +AnnotationAssertion(Annotation( "PMID:33828559") "intrahepatic NK") +AnnotationAssertion(Annotation( "PMID:26639736") "liver NK cell") +AnnotationAssertion(Annotation( "PMID:26330348") "liver resident natural killer cell") +AnnotationAssertion( "liver-specific natural killer cell") +AnnotationAssertion(Annotation( "PMID:35726345") "lr-NK") +AnnotationAssertion(Annotation( "PMID:34230995") rdfs:comment "Liver-resident natural killer cells play a crucial role in modulating the immune response during inflammation by balancing cytotoxic activity and cytokine production, thereby contributing to the maintenance of liver homeostasis and protection against excessive tissue damage.") +AnnotationAssertion(rdfs:label "liver-resident natural killer cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (multiciliated ependymal cell) + +AnnotationAssertion(Annotation( "PMID:25045600") Annotation( "PMID:28067220") Annotation( "PMID:37008045") "An ependymal cell that lines the lateral, third, and fourth ventricles of the brain. The cell is characterized by multiple motile cilia on its apical surface, which beats in a coordinated manner to facilitate the movement of cerebrospinal fluid (CSF), contributing to brain homeostasis.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-20T10:06:15Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:25045600") "multiciliated ependymal cells") +AnnotationAssertion(Annotation( "PMID:28067220") Annotation( "PMID:37008045") Annotation( ) "E1") +AnnotationAssertion(Annotation( "PMID:25045600") Annotation( "PMID:27311928") rdfs:comment "multiciliated ependymal cell, with an average of 16 motile cilia per cell, exhibits two types of planar cell polarity (PCP): rotational polarity, with unidirectional cilia orientation, and translational polarity, with asymmetric cilia positioning in the apical area. This location-specific PCP varies across the ventricular wall, aligning with the direction of CSF flow. These cells are interconnected by adherens and gap junctions, which support intercellular communication and maintain the structural integrity of the ependymal layer. Unlike some other cell types, these cells lack tight junctions.") +AnnotationAssertion(rdfs:label "multiciliated ependymal cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (syncytial cell) AnnotationAssertion(Annotation( "PMID:20851884") Annotation( "Wikipedia:Syncytium") "A multinucleate cell formed by the fusion of multiple uninuclear cells through plasma membrane fusion. This process leads to a single large cell containing multiple nuclei within a shared cytoplasm.") @@ -51694,6 +52109,179 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (intestinal enteroendocrine progenitor) + +AnnotationAssertion(Annotation( "PMID:31756561") Annotation( "PMID:32531023") Annotation( "PMID:35913117") Annotation( "PMID:38260422") Annotation( "doi:/10.1038/s41467-021-27901-5") "An epithelial cell that is part of the crypt of Lieberkuhn, originating from intestinal stem cells and giving rise to enteroendocrine cells (EECs). In mouse and human, this cell can be characterized by the expression of Neurog3, and has the ability to proliferate and differentiate into multiple EEC subtypes. Its proliferative potential contributes to crypt growth, distinguishing it from fully differentiated EECs.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-20T12:13:26Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:31756561") Annotation( ) "EEC Progenitor") +AnnotationAssertion(Annotation( "PMID:25670791") rdfs:comment "The EEC progenitor is also present in other organisms; for example, flies have EEC progenitors but lack intestinal crypts and do not express the same markers. Instead, they are Dl+ and Pros+.") +AnnotationAssertion(rdfs:label "intestinal enteroendocrine progenitor") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pre-theca cell) + +AnnotationAssertion(Annotation( "PMID:20628033") Annotation( "PMID:31320652") Annotation( "PMID:36205477") "A stromal cell that serves as a precursor to the theca cell layers in the ovary growing follicles. This cell is present in the early stages of follicular growth, particularly in smaller follicles. Unlike mature theca cell, a pre-theca cell is initially non-steroidogenic and lacks luteinizing hormone receptors.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-25T11:15:57Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:36205477") "early theca cell") +AnnotationAssertion(Annotation( "PMID:31320652") "progenitor theca cell") +AnnotationAssertion(rdfs:label "pre-theca cell") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (interna theca cell) + +AnnotationAssertion(Annotation( "PMID:15833266") Annotation( "PMID:31320652") Annotation( "PMID:32530882") Annotation( "Wikipedia:Theca_interna") "A specialized theca cell that forms the inner, highly vascularized layer of the theca surrounding ovarian follicles. Originating from progenitor theca cells, the theca interna cell is steroidogenic, playing a crucial role in the production of androgens, which serves as a precursor for estrogen synthesis in granulosa cells. This cell expresses luteinizing hormone receptors, enabling it to respond to hormonal signals that regulate steroidogenesis.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-30T11:10:15Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:31320652") Annotation( ) "inTC") +AnnotationAssertion(Annotation( "PMID:31320652") Annotation( ) "interna TC") +AnnotationAssertion(rdfs:label "interna theca cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +DisjointClasses( ) + +# Class: (externa theca cell) + +AnnotationAssertion(Annotation( "PMID:31320652") Annotation( "PMID:32530882") Annotation( "PMID:36758341") Annotation( "Wikipedia:Theca_externa") "A specialized theca cell that forms the outer layer of the theca surrounding the ovarian follicle, appearing at the antral follicle. Originating from progenitor theca cells, theca externa cell is characterized by its fibroblast-like appearance and primarily function to provide structural support to the developing follicle. This cell produces collagen fibers and extracellular matrix components such as Col1a1 and Col1a2.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-30T11:10:15Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:31320652") Annotation( ) "exTC") +AnnotationAssertion(Annotation( "PMID:31320652") Annotation( ) "externa TC") +AnnotationAssertion(rdfs:label "externa theca cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pancreatic islet capillary endothelial cell) + +AnnotationAssertion(Annotation( "PMID:16607697") Annotation( "PMID:27124642") Annotation( "PMID:28396983") Annotation( "PMID:33200981") "A capillary endothelial cell that is part of islet of Langerhans, characterized by a high density of fenestrations —approximately ten times greater than those in exocrine pancreatic capillaries. These fenestrations facilitate efficient hormone exchange, which is essential for maintaining glucose homeostasis. The cell's structure and function are regulated by the local production of vascular endothelial growth factor-A (VEGF-A), which maintains its fenestrated architecture.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-30T14:36:12Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:16607697") Annotation( "PMID:28396983") "islet endothelial cell") +AnnotationAssertion(Annotation( "PMID:16607697") "pancreatic islet endothelial cell") +AnnotationAssertion(rdfs:label "pancreatic islet capillary endothelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (endocrine gland capillary endothelial cell) + +AnnotationAssertion(Annotation( "PMID:18480313") "Any capillary endothelial cell that is part of an endocrine gland.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-30T15:27:49Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "endocrine gland capillary endothelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pituitary gland capillary endothelial cell) + +AnnotationAssertion(Annotation( "PMID:10810312") Annotation( "PMID:32910242") "A capillary endothelial cell that is part of the pituitary gland. This cell is characterized by its fenestrated structure which facilitates the efficient transport of hormones and other signaling molecules, essential for endocrine signalling.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-09-30T15:31:45Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:4899902") rdfs:comment "In the anterior pituitary gland of rats, capillary endothelial cells are distinguished by numerous fenestrations, which are covered by a single-layered diaphragm. The diaphragm features a dense ring-like structure.") +AnnotationAssertion(rdfs:label "pituitary gland capillary endothelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (choroid plexus capillary endothelial cell) + +AnnotationAssertion(Annotation( "PMID:18480313") Annotation( "PMID:32375819") Annotation( "https://www.ncbi.nlm.nih.gov/books/NBK27998/") "A capillary endothelial cell that is part of the choroid plexus, characterized by its fenestrated nature with 60 to 80 nm fenestrations and lack of tight junctions. This fenestrated structure allows for the rapid delivery of water and other components, aiding in the production of cerebrospinal fluid (CSF).") +AnnotationAssertion( ) +AnnotationAssertion( "2024-10-01T11:38:22Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "choroid plexus capillary endothelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fallopian tube epithelial cell) + +AnnotationAssertion(Annotation( "Wikipedia:Fallopian_tube") "Any epithelial cell that is part of the fallopian tube.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-10-01T12:09:12Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "Wikipedia:Fallopian_tube") "oviduct epithelial cell") +AnnotationAssertion(Annotation( "Wikipedia:Fallopian_tube") "uterine tube epithelial cell") +AnnotationAssertion(rdfs:label "fallopian tube epithelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fallopian tube smooth muscle cell) + +AnnotationAssertion(Annotation( "PMID:31183831") Annotation( "PMID:31613440") "A smooth muscle cell that is part of the fallopian tube. This cell is responsible for peristaltic contractions that facilitate gamete and embryo transport, fluid mixing, and embryo admission to the uterus.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-10-21T12:16:54Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:31613440") "oviduct smooth muscle cell") +AnnotationAssertion(Annotation( "PMID:31613440") "uterine tube smooth muscle cell") +AnnotationAssertion(Annotation( "PMID:18621753") rdfs:comment "The fallopian tube smooth muscle cell in the human contracts dynamically in response to hormones and signaling molecules. Prostaglandins, particularly PGF2α and PGE2, have been shown to increase muscular contractions, while progesterone, levonorgestrel, mifepristone, oxytocin, and human chorionic gonadotropin (hCG) decrease them. These contractile responses are crucial for regulating gamete and embryo transport through the fallopian tube.") +AnnotationAssertion(rdfs:label "fallopian tube smooth muscle cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (luminal endometrial unciliated epithelial cell) + +AnnotationAssertion(Annotation( "PMID:32929266") Annotation( "PMID:36581776") Annotation( "PMID:38559249") Annotation( "PMID:39198675") "An epithelial cell that is part of the endometrial luminal epithelium, forming a continuous layer lining the uterine cavity. This cell undergoes cyclical changes during the menstrual cycle, proliferating under estrogen in the proliferative phase, and differentiating under progesterone in the secretory phase to prepare for potential implantation. During the window of implantation, this cell changes from a tall columnar shape to a shorter columnar or cuboidal form, loses polarity, and becomes receptive to blastocyst implantation.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-10-22T12:02:23Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:31317179") "endometrial luminal epithelial cell") +AnnotationAssertion( "luminal cell of endometrium") +AnnotationAssertion(Annotation( "PMID:39198675") rdfs:comment "The luminal endometrial unciliated epithelial cell expresses WNT7A, and LGR5 during the proliferative phase, transitioning to express VTCN1 and SULT1E1 in the early secretory phase, and LEFTY1, IL6, and PTGS1 in the mid- to late-secretory phases.") +AnnotationAssertion(rdfs:label "luminal endometrial unciliated epithelial cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (uterine natural killer cell) + +AnnotationAssertion(Annotation( "PMID:35720413") Annotation( "PMID:39198675") Annotation( "Wikipedia:Uterine_natural_killer_cells") "A natural killer cell that is part of the uterus, specifically within the endometrium during the non-pregnant state and in the decidua during pregnancy. This cell exhibits dynamic changes in frequency throughout the menstrual cycle, with lower levels during menstruation and a significant increase during the mid-secretory phase and early pregnancy.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-11-15T10:12:40Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:35720413") "endometrial natural killer cell") +AnnotationAssertion(Annotation( "PMID:39198675") Annotation( ) "uNK cell") +AnnotationAssertion(rdfs:label "uterine natural killer cell") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (adventitial fibroblast) + +AnnotationAssertion(Annotation( "PMID:28705796") Annotation( "PMID:36718802") "A fibroblast of the adventitia of a blood vessel. This cell contributes to vascular homeostasis, remodeling, and inflammation by producing extracellular matrix components, cytokines, and growth factors. Adventitial fibroblast can transition into an activated state during injury or disease, marked by increased proliferation, migration, matrix deposition, and contractile protein expression") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-05T11:01:15Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:36718802") rdfs:comment "Single-cell transcriptomics of murine aorta identifies two adventitial fibroblast-specific markers, PDGFRA and DPEP1, which were validated at the protein level by immunohistochemistry and flow cytometry across human and murine arteries, highlighting fibroblast heterogeneity in health and cardiovascular disease (CVD) in humans and mice.") +AnnotationAssertion(rdfs:label "adventitial fibroblast") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (striated cell of salivary gland) AnnotationAssertion(Annotation( "PMID:30855909") Annotation( "PMID:34147989") Annotation( "PMID:36726292") "An columnar/cuboidal epithelial cell that is part of the striated duct of salivary gland, characterized by basal striations formed by infoldings of the plasma membrane. This cell play a crucial role in modifying the electrolyte composition and concentration of saliva through active ion transport, particularly the absorption of sodium and secretion of potassium.") @@ -60116,6 +60704,7 @@ AnnotationAssertion( "pancreatic D cell differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -60188,7 +60777,7 @@ AnnotationAssertion( "GO:0003322") AnnotationAssertion(rdfs:label "pancreatic A cell development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -60203,7 +60792,7 @@ AnnotationAssertion( "GO:0003323") AnnotationAssertion(rdfs:label "type B pancreatic cell development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -60217,7 +60806,8 @@ AnnotationAssertion( "GO:0003324") AnnotationAssertion(rdfs:label "pancreatic D cell development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -60230,7 +60820,7 @@ AnnotationAssertion( "GO:0003325") AnnotationAssertion(rdfs:label "pancreatic PP cell development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -62602,6 +63192,38 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "lipid droplet") SubClassOf( ) +# Class: (centriole) + +AnnotationAssertion(Annotation( "ISBN:0198547684") "A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle.") +AnnotationAssertion( "NIF_Subcellular:sao95019936") +AnnotationAssertion( "Wikipedia:Centriole") +AnnotationAssertion(Annotation( "GOC:cilia") "daughter centriole") +AnnotationAssertion(Annotation( "GOC:cilia") "mother centriole") +AnnotationAssertion( "cellular_component") +AnnotationAssertion( "GO:0005814") +AnnotationAssertion(rdfs:comment "In most eukaryotic cells, 'ciliary basal body' (GO:0036064) and 'centriole' (GO:0005814) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain different proteins, specific to each component.") +AnnotationAssertion(rdfs:label "centriole") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (microtubule organizing center) + +AnnotationAssertion(Annotation( "GOC:vw") Annotation( "ISBN:0815316194") Annotation( "PMID:17072892") Annotation( "PMID:17245416") Annotation( "Wikipedia:Microtubule_organizing_center") "An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.") +AnnotationAssertion( "Wikipedia:Microtubule_organizing_center") +AnnotationAssertion( "MTOC") +AnnotationAssertion( "microtubule organising centre") +AnnotationAssertion( "cellular_component") +AnnotationAssertion( "GO:0005815") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microtubule organizing center") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (cytosol) AnnotationAssertion(Annotation( "GOC:hjd") Annotation( "GOC:jl") "The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.") @@ -78402,7 +79024,7 @@ AnnotationAssertion( "GO:0021859") AnnotationAssertion(rdfs:label "pyramidal neuron differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (pyramidal neuron development) @@ -78491,7 +79113,7 @@ AnnotationAssertion( "GO:0021889") AnnotationAssertion(rdfs:label "olfactory bulb interneuron differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -78502,7 +79124,7 @@ AnnotationAssertion( "GO:0021891") AnnotationAssertion(rdfs:label "olfactory bulb interneuron development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -78524,7 +79146,7 @@ AnnotationAssertion( "GO:0021894") AnnotationAssertion(rdfs:label "cerebral cortex GABAergic interneuron development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -78535,7 +79157,7 @@ AnnotationAssertion( "GO:0021895") AnnotationAssertion(rdfs:label "cerebral cortex neuron differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -81578,6 +82200,21 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (microtubule organizing center organization) + +AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:jl") Annotation( "GOC:mah") "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microtubule organizing center, a structure from which microtubules grow.") +AnnotationAssertion( "microtubule organising center organisation") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:mah") "microtubule organizing center organization and biogenesis") +AnnotationAssertion( "GO:0031023") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microtubule organizing center organization") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (actomyosin structure organization) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:jl") Annotation( "GOC:mah") "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin or paramyosin. The myosin may be organized into filaments.") @@ -82734,6 +83371,20 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ciliary basal body organization) + +AnnotationAssertion(Annotation( "GOC:cilia") Annotation( "GOC:dph") Annotation( "GOC:jl") Annotation( "GOC:krc") Annotation( "GOC:mah") Annotation( "PMID:9889124") "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a ciliary basal body, a short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum).") +AnnotationAssertion(Annotation( "GOC:mah") "microtubule basal body organisation") +AnnotationAssertion( "microtubule basal body organization") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:mah") "microtubule basal body organization and biogenesis") +AnnotationAssertion( "GO:0032053") +AnnotationAssertion(rdfs:label "ciliary basal body organization") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (negative regulation of translational initiation in response to stress) AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents or reduces the rate of translation initiation as a result of a stimulus indicating the organism is under stress.") @@ -88668,7 +89319,7 @@ AnnotationAssertion( "GO:0035881") AnnotationAssertion(rdfs:label "amacrine cell differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -88681,7 +89332,7 @@ AnnotationAssertion( "GO:0035883") AnnotationAssertion(rdfs:label "enteroendocrine cell differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (vascular associated smooth muscle cell differentiation) @@ -89063,6 +89714,27 @@ DisjointClasses( ObjectSomeValuesFrom DisjointClasses( ObjectSomeValuesFrom( )) DisjointClasses( ObjectSomeValuesFrom( )) +# Class: (ciliary basal body) + +AnnotationAssertion(Annotation( "GOC:cilia") Annotation( "GOC:clt") Annotation( "PMID:21750193") "A membrane-tethered, short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum) that is similar in structure to a centriole and derives from it. The cilium basal body is the site of assembly and remodeling of the cilium and serves as a nucleation site for axoneme growth. As well as anchoring the cilium, it is thought to provide a selective gateway regulating the entry of ciliary proteins and vesicles by intraflagellar transport.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2011-12-15T10:40:20Z") +AnnotationAssertion( "GO:0005932") +AnnotationAssertion( "basal body") +AnnotationAssertion( "NIF_Subcellular:sao11978067") +AnnotationAssertion( "cilial basal body") +AnnotationAssertion(Annotation( "GOC:bf") "cilium basal body") +AnnotationAssertion(Annotation( "PMID:11125699") "kinetosome") +AnnotationAssertion( "microtubule basal body") +AnnotationAssertion( "cellular_component") +AnnotationAssertion( "GO:0036064") +AnnotationAssertion(rdfs:comment "In most eukaryotic cells, 'ciliary basal body' (GO:0036064) and 'centriole' (GO:0005814) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain different proteins, specific to each component.") +AnnotationAssertion(rdfs:label "ciliary basal body") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (direct ossification) AnnotationAssertion(Annotation( "GO_REF:0000034") "The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance, that does not require the replacement of preexisting tissues.") @@ -99128,6 +99800,19 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (decidualization) + +AnnotationAssertion(Annotation( "ISBN:0721662544") Annotation( "PMID:11133685") "The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta.") +AnnotationAssertion( "Wikipedia:Decidualization") +AnnotationAssertion( "decidual cell reaction") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046697") +AnnotationAssertion(rdfs:label "decidualization") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (muscle cell cellular homeostasis) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "PMID:3091429") Annotation( "PMID:7781901") "The cellular homeostatic process that preserves a muscle cell in a stable functional or structural state.") @@ -105744,6 +106429,20 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (microtubule nucleation by microtubule organizing center) + +AnnotationAssertion(Annotation( "GOC:ai") "The 'de novo' formation of a microtubule, mediated by the microtubule organizing center.") +AnnotationAssertion( "MTOC-mediated microtubule nucleation") +AnnotationAssertion( "microtubule nucleation by MTOC") +AnnotationAssertion( "microtubule nucleation by microtubule organising centre") +AnnotationAssertion( "microtubule organizing center-mediated microtubule nucleation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0051418") +AnnotationAssertion(rdfs:label "microtubule nucleation by microtubule organizing center") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (regulation of meiotic cell cycle) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:dph") Annotation( "GOC:tb") "Any process that modulates the rate or extent of progression through the meiotic cell cycle.") @@ -110024,7 +110723,7 @@ AnnotationAssertion( "GO:0060480") AnnotationAssertion(rdfs:label "lung goblet cell differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -112381,8 +113080,8 @@ AnnotationAssertion( "GO:0060945") AnnotationAssertion(rdfs:label "cardiac neuron differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -112463,7 +113162,7 @@ AnnotationAssertion( "GO:0060959") AnnotationAssertion(rdfs:label "cardiac neuron development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -113587,6 +114286,7 @@ AnnotationAssertion( "lung ciliated cell differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Peyer's patch morphogenesis) @@ -115123,7 +115823,7 @@ AnnotationAssertion( "GO:0061449") AnnotationAssertion(rdfs:label "olfactory bulb tufted cell development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -115815,6 +116515,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (microtubule organizing center localization) + +AnnotationAssertion(Annotation( "PMID:21281821") "Any process in which the microtubule organizing center is transported to, and/or maintained in, a specific location within the cell.") +AnnotationAssertion( "MTOC localization") +AnnotationAssertion( "MTOC polarity") +AnnotationAssertion( "microtubule organizing center polarity") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0061842") +AnnotationAssertion(rdfs:label "microtubule organizing center localization") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (antimicrobial humoral immune response mediated by antimicrobial peptide) AnnotationAssertion(Annotation( "PMID:15761415") Annotation( "PMID:24287494") "An immune response against microbes mediated by anti-microbial peptides in body fluid.") @@ -121772,7 +122486,7 @@ AnnotationAssertion( "These processes continue to 60 DPA in Gossypium spp.") AnnotationAssertion(rdfs:label "type B pancreatic cell maturation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -124292,7 +125006,6 @@ AnnotationAssertion( "GO:0097457") AnnotationAssertion(rdfs:label "hippocampal mossy fiber") SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal rod cell apoptotic process) @@ -124659,6 +125372,25 @@ AnnotationAssertion( "extracellular exosome biogenesis") SubClassOf( ) +# Class: (de novo centriole assembly) + +AnnotationAssertion(Annotation( "GOC:cilia") Annotation( "PMID:25047614") Annotation( "PMID:25291643") "Centriole assembly in which a centriole arises de novo, rather than by replication from an existing centriole. This process may occur via different mechanisms. Examples include the deuterosome pathway in multicilated epithelial animal cells and formation of centrioles during parthenogenesis in some insects.") +AnnotationAssertion( "pr") +AnnotationAssertion( "2016-10-19T15:13:50Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "acentriolar basal body biogenesis") +AnnotationAssertion( "de novo basal body amplification") +AnnotationAssertion( "de novo basal body assembly") +AnnotationAssertion( "de novo basal body biogenesis") +AnnotationAssertion( "de novo basal body generation") +AnnotationAssertion( "de novo centriole amplification") +AnnotationAssertion( "de novo ciliary basal body assembly") +AnnotationAssertion( "multiciliation") +AnnotationAssertion( "multiciliogenesis") +AnnotationAssertion( "GO:0097742") +AnnotationAssertion(rdfs:label "de novo centriole assembly") +SubClassOf( ) + # Class: (excitatory neuromuscular junction) AnnotationAssertion(Annotation( "GOC:dos") "The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible for muscle contraction.") @@ -124728,6 +125460,53 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (centriole assembly) + +AnnotationAssertion(Annotation( "GOC:dos") Annotation( "PMID:24075808") "A cellular process that results in the assembly of one or more centrioles.") +AnnotationAssertion( "dos") +AnnotationAssertion( "2013-10-22T15:55:22Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0098534") +AnnotationAssertion(rdfs:label "centriole assembly") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (de novo centriole assembly involved in multi-ciliated epithelial cell differentiation) + +AnnotationAssertion(Annotation( "GOC:cilia") Annotation( "GOC:dos") Annotation( "PMID:24075808") Annotation( "PMID:5111878") Annotation( "PMID:5661997") "Centriole assembly in which a centriole arises de novo by a process involving an electron-dense structure known as a deuterosome, rather than by duplication of an existing centriole, and occurring as part of multi-ciliated epithelial cell differentiation.") +AnnotationAssertion( "dos") +AnnotationAssertion( "2013-10-22T16:03:13Z") +AnnotationAssertion( "de novo centriole assembly") +AnnotationAssertion( "de novo centriole assembly via deuterosome") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "PMID:24075808") "centriole amplification") +AnnotationAssertion( "deuterosomal basal body biogenesis") +AnnotationAssertion(Annotation( "PMID:25047614") "deuterosome pathway") +AnnotationAssertion(Annotation( "PMID:24075808") "deuterosome-mediated centriole biogenesis") +AnnotationAssertion( "multiciliation") +AnnotationAssertion( "multiciliogenesis") +AnnotationAssertion( "GO:0098535") +AnnotationAssertion(rdfs:comment "In most eukaryotic cells, 'centriole' (GO:0005814) and 'ciliary basal body' (GO:0036064) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain different proteins, specific to each component.") +AnnotationAssertion(rdfs:label "de novo centriole assembly involved in multi-ciliated epithelial cell differentiation") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (deuterosome) + +AnnotationAssertion(Annotation( "GOC:cilia") Annotation( "GOC:dos") Annotation( "PMID:24075808") Annotation( "PMID:25047614") Annotation( "PMID:5661997") "A spherical, electron dense, cytoplasmic structure that is involved in de novo assembly of centrioles.") +AnnotationAssertion( "dos") +AnnotationAssertion( "2013-10-22T16:21:19Z") +AnnotationAssertion( "cellular_component") +AnnotationAssertion( "GO:0098536") +AnnotationAssertion(rdfs:label "deuterosome") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectAllValuesFrom( )) + # Class: (defense response to other organism) AnnotationAssertion(Annotation( "GOC:dos") "Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism.") @@ -141862,7 +142641,7 @@ AnnotationAssertion(Annotation( "GO:1904002") AnnotationAssertion(rdfs:label "regulation of sebum secreting cell proliferation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (negative regulation of sebum secreting cell proliferation) @@ -141883,7 +142662,7 @@ AnnotationAssertion(Annotation( "GO:1904003") AnnotationAssertion(rdfs:label "negative regulation of sebum secreting cell proliferation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -141905,7 +142684,7 @@ AnnotationAssertion(Annotation( "GO:1904004") AnnotationAssertion(rdfs:label "positive regulation of sebum secreting cell proliferation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -148429,6 +149208,21 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (protein localization to microtubule organizing center) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000087") Annotation( "PMID:19001497") "A process in which a protein is transported to, or maintained in, a location within a microtubule organizing center.") +AnnotationAssertion( "mah") +AnnotationAssertion( "2016-09-28T12:32:16Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "protein localisation in microtubule organizing center") +AnnotationAssertion(Annotation( "GOC:TermGenie") "protein localisation to microtubule organizing center") +AnnotationAssertion(Annotation( "GOC:TermGenie") "protein localization in microtubule organizing center") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1905508") +AnnotationAssertion(rdfs:label "protein localization to microtubule organizing center") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (non-motile cilium assembly) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:cilia") Annotation( "GOC:kmv") Annotation( "GO_REF:0000079") Annotation( "PMID:14521833") Annotation( "PMID:14521834") "The aggregation, arrangement and bonding together of a set of components to form a non-motile cilium.") @@ -150635,7 +151429,7 @@ AnnotationAssertion(Annotation( "GO:1990654") AnnotationAssertion(rdfs:label "sebum secreting cell proliferation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (cholangiocyte proliferation) @@ -155893,6 +156687,7 @@ SubClassOf( (Saccharomycotina) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:38895705") AnnotationAssertion(Annotation( ) "true yeasts") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:147537") @@ -156350,6 +157145,23 @@ AnnotationAssertion(rdfs:label ) DisjointClasses( ) +# Class: (Columbimorphae) + +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "pigeons, sandgrouse & allies") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:3073799") +AnnotationAssertion(rdfs:label "Columbimorphae") +SubClassOf( ) + +# Class: (Neoaves) + +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:3078114") +AnnotationAssertion(rdfs:label "Neoaves") +SubClassOf( ) + # Class: (Tetraodontiformes) AnnotationAssertion( "GC_ID:1") @@ -157086,6 +157898,7 @@ SubClassOf( (Saccharomycetes) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:38895705") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Hemiascomycetes") AnnotationAssertion( "NCBITaxon:4891") @@ -157095,6 +157908,7 @@ SubClassOf( (Saccharomycetales) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:38895705") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Endomycetales") AnnotationAssertion(Annotation( ) "budding yeasts") @@ -157163,6 +157977,7 @@ AnnotationAssertion( ) "Candida robusta") AnnotationAssertion(Annotation( ) "Mycoderma cerevisiae") AnnotationAssertion(Annotation( ) "Saccharomyces capensis") +AnnotationAssertion(Annotation( ) "Saccharomyces cerevisiae (Desm.) Meyen ex E.C. Hansen, 1883") AnnotationAssertion(Annotation( ) "Saccharomyces diastaticus") AnnotationAssertion(Annotation( ) "Saccharomyces italicus") AnnotationAssertion(Annotation( ) "Saccharomyces oviformis") @@ -157963,7 +158778,7 @@ AnnotationAssertion(Annotation( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:8929") AnnotationAssertion(rdfs:label "Columbiformes") -SubClassOf( ) +SubClassOf( ) # Class: (Columbidae) @@ -159650,19 +160465,6 @@ AnnotationAssertion( "basket cell morphology") SubClassOf( ) -# Class: (cortical bipolar morphology) - -AnnotationAssertion(Annotation( "PMID:18568015") Annotation( "doi:10.1016/b978-0-12-369497-3.10004-4") "A cell morphology that inheres in neurons which have two principal dendrites that emerge from the soma and begin to branch some distance from it, have few spines, and branch in narrow fields. This is in contrast to bitufted morphology where branching occurs close to the soma.") -AnnotationAssertion( ) -AnnotationAssertion( "ILX:0101312") -AnnotationAssertion( "ilxtr:BipolarPhenotype") -AnnotationAssertion( "nifext:2") -AnnotationAssertion( "quality") -AnnotationAssertion( "PATO:0070006") -AnnotationAssertion(rdfs:comment "This is specific to cortical bipolar cells and are distinguished from retinal bipolar cell morphology which has an axon and dendrite emerging from opposite ends of the soma.") -AnnotationAssertion(rdfs:label "cortical bipolar morphology") -SubClassOf( ) - # Class: (stellate morphology) AnnotationAssertion(Annotation( "ISBN:9780123973481") "A cell morphology that inheres in neurons that have dendritic processes radiating from the cell body forming a star-like shape.") @@ -159685,6 +160487,15 @@ AnnotationAssertion( "pyramidal family morphology") SubClassOf( ) +# Class: (unipolar neuron morphology) + +AnnotationAssertion(Annotation( "WikipediaVersioned:Unipolar_neuron&oldid=994458581") "A cell morphology that inheres in neurons with only one process, a neurite, that extends from the cell body. The neurite then branches to form dendritic and axonal processes.") +AnnotationAssertion( ) +AnnotationAssertion( "quality") +AnnotationAssertion( "PATO:0070025") +AnnotationAssertion(rdfs:label "unipolar neuron morphology") +SubClassOf( ) + # Class: (multipolar neuron morphology) AnnotationAssertion(Annotation( "WikipediaVersioned:Multipolar_neuron&oldid=1022942606") "A cell morphology that inheres in neurons which possess three or more neurites, usually a single axon and many dendrites and dendritic branches.") @@ -159696,16 +160507,6 @@ AnnotationAssertion( "multipolar neuron morphology") SubClassOf( ) -# Class: (bitufted dendrite cell morphology) - -AnnotationAssertion(Annotation( "PMID:18568015") "A cell morphology that inheres in neurons with dendrites that are bidirectional, emerging from opposite ends of the soma, with the two arbors extending in radial or tangential directions.") -AnnotationAssertion( ) -AnnotationAssertion( "quality") -AnnotationAssertion( "PATO:0070027") -AnnotationAssertion(rdfs:comment "This morphology type is distinct from bitufted cell morphology in that it refers to bitufted dendrite morphology rather than bitufted cell morphology.") -AnnotationAssertion(rdfs:label "bitufted dendrite cell morphology") -SubClassOf( ) - # Class: (anatomical structure quality) AnnotationAssertion( "A quality of continuant that exist at the anatomical level of organisation and anything under it. This includes, but is not limited to, cells , tissues, and components.") @@ -161797,16 +162598,6 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "receptor-type tyrosine-protein phosphatase C isoform CD45R") SubClassOf( ) -# Class: (obsolete protein-containing material entity) - -AnnotationAssertion(Annotation( "PRO:DAN") "OBSOLETE. A material entity that minimally consists of a protein.") -AnnotationAssertion( "PR:000064867") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000050567") -AnnotationAssertion(rdfs:comment "Note: Made obsolete since the term definition was much broader than intended. Originally meant to include only single proteins (and derivatives thereof; PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566), it instead also included cells defined as having certain protein attachments.") -AnnotationAssertion(rdfs:label "obsolete protein-containing material entity") -AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) - # Class: (protein-containing molecular entity) AnnotationAssertion(Annotation( "PRO:DAN") "A molecular entity that minimally consists of a protein.") @@ -166888,8 +167679,26 @@ AnnotationAssertion( "BilaDO:0000004") AnnotationAssertion( "EFO:0001272") AnnotationAssertion( "FBdv:00005369") +AnnotationAssertion(Annotation( ) "HsapDv:0010000") +AnnotationAssertion(Annotation( ) "MmusDv:0000092") AnnotationAssertion( "WBls:0000041") AnnotationAssertion( "XtroDO:0000084") +AnnotationAssertion(Annotation( ) "obo:BtauDv_0000078") +AnnotationAssertion(Annotation( ) "obo:CfamDv_0000007") +AnnotationAssertion(Annotation( ) "obo:DpseDv_0000005") +AnnotationAssertion(Annotation( ) "obo:DsimDv_0000005") +AnnotationAssertion(Annotation( ) "obo:EcabDv_0000007") +AnnotationAssertion(Annotation( ) "obo:FcatDv_0000007") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000076") +AnnotationAssertion(Annotation( ) "obo:GgorDv_0000032") +AnnotationAssertion(Annotation( ) "obo:MmulDv_0000052") +AnnotationAssertion(Annotation( ) "obo:OanaDv_0000007") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000024") +AnnotationAssertion(Annotation( ) "obo:PpanDv_0000041") +AnnotationAssertion(Annotation( ) "obo:PtroDv_0000052") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000061") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000040") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000084") AnnotationAssertion( "fully formed animal stage") AnnotationAssertion( "juvenile-adult stage") AnnotationAssertion( "uberon") @@ -166911,8 +167720,8 @@ AnnotationAssertion( "EV:0300001") AnnotationAssertion( "FBdv:00005289") AnnotationAssertion( "FMA:72652") -AnnotationAssertion( "HsapDv:0000002") -AnnotationAssertion( "MmusDv:0000002") +AnnotationAssertion(Annotation( ) "HsapDv:0000045") +AnnotationAssertion(Annotation( ) "MmusDv:0000042") AnnotationAssertion( "OGES:000000") AnnotationAssertion( "OGES:000022") AnnotationAssertion( "SCTID:296280003") @@ -166920,6 +167729,26 @@ AnnotationAssertion( "WBls:0000092") AnnotationAssertion( "WBls:0000102") AnnotationAssertion( "XAO:1000012") +AnnotationAssertion(Annotation( ) "obo:AcarDv_0000002") +AnnotationAssertion(Annotation( ) "obo:BtauDv_0000002") +AnnotationAssertion(Annotation( ) "obo:CfamDv_0000002") +AnnotationAssertion(Annotation( ) "obo:CporDv_0000002") +AnnotationAssertion(Annotation( ) "obo:DpseDv_0000002") +AnnotationAssertion(Annotation( ) "obo:DsimDv_0000002") +AnnotationAssertion(Annotation( ) "obo:EcabDv_0000002") +AnnotationAssertion(Annotation( ) "obo:FcatDv_0000002") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000002") +AnnotationAssertion(Annotation( ) "obo:GgorDv_0000002") +AnnotationAssertion(Annotation( ) "obo:MdomDv_0000002") +AnnotationAssertion(Annotation( ) "obo:MmulDv_0000002") +AnnotationAssertion(Annotation( ) "obo:OanaDv_0000002") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000002") +AnnotationAssertion(Annotation( ) "obo:OcunDv_0000002") +AnnotationAssertion(Annotation( ) "obo:PpanDv_0000002") +AnnotationAssertion(Annotation( ) "obo:PtroDv_0000002") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000002") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000002") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000002") AnnotationAssertion( "embryonic stage") AnnotationAssertion( "uberon") AnnotationAssertion( "embryogenesis") @@ -166947,6 +167776,9 @@ AnnotationAssertion( "OGES:000008") AnnotationAssertion( "Wikipedia:Larva") AnnotationAssertion( "ZFS:0000048") +AnnotationAssertion(Annotation( ) "obo:DpseDv_0000003") +AnnotationAssertion(Annotation( ) "obo:DsimDv_0000003") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000039") AnnotationAssertion( "larva stage") AnnotationAssertion(Annotation( "Wikipedia:Larva") Annotation( ) "ammocoete") AnnotationAssertion(Annotation( "Wikipedia:Larva") Annotation( ) "ammocoete stage") @@ -167015,6 +167847,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (proximo-distal subdivision of respiratory tract) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "An section of a respiratory tract.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "MA") "MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole") AnnotationAssertion( "FMA:45660") AnnotationAssertion( "MA:0000434") @@ -167022,6 +167855,7 @@ AnnotationAssertion( "MA:0000434") "respiratory tract") AnnotationAssertion( "subdivision of respiratory tract") AnnotationAssertion( "UBERON:0000072") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -167647,6 +168481,7 @@ AnnotationAssertion( "WBls:0000022") AnnotationAssertion( "WBls:0000093") AnnotationAssertion( "WBls:0000103") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000038") AnnotationAssertion( "postembryonic stage") AnnotationAssertion( "post-hatching stage") AnnotationAssertion( "uberon") @@ -167766,10 +168601,30 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "FBdv:00000000") -AnnotationAssertion( "HsapDv:0000001") -AnnotationAssertion( "MmusDv:0000001") +AnnotationAssertion(Annotation( ) "HsapDv:0000001") +AnnotationAssertion(Annotation( ) "MmusDv:0000001") AnnotationAssertion( "OGES:000011") AnnotationAssertion( "ncithesaurus:Life") +AnnotationAssertion(Annotation( ) "obo:AcarDv_0000001") +AnnotationAssertion(Annotation( ) "obo:BtauDv_0000001") +AnnotationAssertion(Annotation( ) "obo:CfamDv_0000001") +AnnotationAssertion(Annotation( ) "obo:CporDv_0000001") +AnnotationAssertion(Annotation( ) "obo:DpseDv_0000001") +AnnotationAssertion(Annotation( ) "obo:DsimDv_0000001") +AnnotationAssertion(Annotation( ) "obo:EcabDv_0000001") +AnnotationAssertion(Annotation( ) "obo:FcatDv_0000001") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000001") +AnnotationAssertion(Annotation( ) "obo:GgorDv_0000001") +AnnotationAssertion(Annotation( ) "obo:MdomDv_0000001") +AnnotationAssertion(Annotation( ) "obo:MmulDv_0000001") +AnnotationAssertion(Annotation( ) "obo:OanaDv_0000001") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000001") +AnnotationAssertion(Annotation( ) "obo:OcunDv_0000001") +AnnotationAssertion(Annotation( ) "obo:PpanDv_0000001") +AnnotationAssertion(Annotation( ) "obo:PtroDv_0000001") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000001") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000001") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000001") AnnotationAssertion( "entire life cycle") AnnotationAssertion( "entire lifespan") AnnotationAssertion( "life") @@ -167799,16 +168654,35 @@ AnnotationAssertion( "EFO:0000399") AnnotationAssertion( "FBdv:00007012") AnnotationAssertion( "FMA:24120") -AnnotationAssertion( "HsapDv:0000000") +AnnotationAssertion(Annotation( ) "HsapDv:0000000") AnnotationAssertion( "MESH:D008018") -AnnotationAssertion( "MmusDv:0000000") -AnnotationAssertion( "OlatDv:0000010") +AnnotationAssertion(Annotation( ) "MmusDv:0000000") AnnotationAssertion( "PdumDv:0000090") AnnotationAssertion( "WBls:0000002") AnnotationAssertion( "XAO:1000000") AnnotationAssertion( "ZFS:0000000") AnnotationAssertion( "ZFS:0100000") AnnotationAssertion( "ncithesaurus:Developmental_Stage") +AnnotationAssertion(Annotation( ) "obo:AcarDv_0000000") +AnnotationAssertion(Annotation( ) "obo:BtauDv_0000000") +AnnotationAssertion(Annotation( ) "obo:CfamDv_0000000") +AnnotationAssertion(Annotation( ) "obo:CporDv_0000000") +AnnotationAssertion(Annotation( ) "obo:DpseDv_0000000") +AnnotationAssertion(Annotation( ) "obo:DsimDv_0000000") +AnnotationAssertion(Annotation( ) "obo:EcabDv_0000000") +AnnotationAssertion(Annotation( ) "obo:FcatDv_0000000") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000000") +AnnotationAssertion(Annotation( ) "obo:GgorDv_0000000") +AnnotationAssertion(Annotation( ) "obo:MdomDv_0000000") +AnnotationAssertion(Annotation( ) "obo:MmulDv_0000000") +AnnotationAssertion(Annotation( ) "obo:OanaDv_0000000") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000000") +AnnotationAssertion(Annotation( ) "obo:OcunDv_0000000") +AnnotationAssertion(Annotation( ) "obo:PpanDv_0000000") +AnnotationAssertion(Annotation( ) "obo:PtroDv_0000000") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000000") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000000") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000000") AnnotationAssertion( "developmental stage") AnnotationAssertion( "stage") AnnotationAssertion( "uberon") @@ -167831,13 +168705,19 @@ AnnotationAssertion( "EFO:0001322") AnnotationAssertion( "EHDAA:27") AnnotationAssertion( "FBdv:00005288") +AnnotationAssertion(Annotation( ) "HsapDv:0000003") AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "IDOMAL:0000302") +AnnotationAssertion(Annotation( ) "MmusDv:0000003") AnnotationAssertion( "NCIT:C12601") AnnotationAssertion( "PdumDv:0000100") AnnotationAssertion( "VHOG:0000745") AnnotationAssertion( "Wikipedia:Zygote") AnnotationAssertion( "XAO:1000001") AnnotationAssertion( "ZFS:0000001") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000009") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000048") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000003") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000087") AnnotationAssertion( "1-cell stage") AnnotationAssertion(Annotation( "BTO:0000854") "fertilized egg stage") AnnotationAssertion( "one cell stage") @@ -167863,14 +168743,20 @@ AnnotationAssertion( "BilaDO:0000006") AnnotationAssertion( "EFO:0001290") AnnotationAssertion( "FBdv:00000054") +AnnotationAssertion(Annotation( ) "HsapDv:0000005") AnnotationAssertion( "MESH:D002970") -AnnotationAssertion( "MmusDv:0000004") +AnnotationAssertion(Annotation( ) "MmusDv:0000004") AnnotationAssertion( "OGES:000015") AnnotationAssertion( "OGES:000020") AnnotationAssertion( "PdumDv:0000200") AnnotationAssertion( "Wikipedia:Cleavage_(embryo)") AnnotationAssertion( "XAO:1000004") AnnotationAssertion( "ZFS:0000046") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000064") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000010") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000049") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000004") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000088") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000107") AnnotationAssertion( ) @@ -167890,8 +168776,8 @@ AnnotationAssertion( "BILS:0000108") AnnotationAssertion( "BilaDO:0000007") AnnotationAssertion( "EFO:0001282") -AnnotationAssertion( "HsapDv:0000006") -AnnotationAssertion( "MmusDv:0000007") +AnnotationAssertion(Annotation( ) "HsapDv:0000006") +AnnotationAssertion(Annotation( ) "MmusDv:0000007") AnnotationAssertion( "OGES:000003") AnnotationAssertion( "OGES:000016") AnnotationAssertion( "OGES:000021") @@ -167899,6 +168785,11 @@ AnnotationAssertion( "Wikipedia:Blastula") AnnotationAssertion( "XAO:1000003") AnnotationAssertion( "ZFS:0000045") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000091") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000025") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000054") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000012") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000089") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000108") AnnotationAssertion( ) @@ -167917,13 +168808,18 @@ AnnotationAssertion( "BilaDO:0000008") AnnotationAssertion( "EFO:0001296") AnnotationAssertion( "FBdv:00005317") -AnnotationAssertion( "HsapDv:0000010") -AnnotationAssertion( "MmusDv:0000013") +AnnotationAssertion(Annotation( ) "HsapDv:0000010") +AnnotationAssertion(Annotation( ) "MmusDv:0000013") AnnotationAssertion( "OGES:000004") AnnotationAssertion( "OGES:000019") AnnotationAssertion( "WBls:0000010") AnnotationAssertion( "XAO:1000005") AnnotationAssertion( "ZFS:0000047") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000092") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000026") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000005") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000016") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000090") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "blastocystis trilaminaris stage") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "trilaminar blastocyst stage") @@ -167949,9 +168845,13 @@ AnnotationAssertion( "In zebrafish, the times of neurulation and segmentation overlap so extensively there is no distinct neurula period of development, such as occurs largely before segmentation in amphibian embryos.") AnnotationAssertion( "BILS:0000110") AnnotationAssertion( "BilaDO:0000009") -AnnotationAssertion( "HsapDv:0000012") -AnnotationAssertion( "MmusDv:0000017") +AnnotationAssertion(Annotation( ) "HsapDv:0000012") +AnnotationAssertion(Annotation( ) "MmusDv:0000017") AnnotationAssertion( "XAO:1000006") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000093") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000027") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000007") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000091") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000110") AnnotationAssertion( ) @@ -167970,11 +168870,16 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "Wikipedia:Organogenesis") "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism.") AnnotationAssertion( "BILS:0000111") AnnotationAssertion( "BilaDO:0000010") -AnnotationAssertion( "HsapDv:0000015") -AnnotationAssertion( "MmusDv:0000018") +AnnotationAssertion(Annotation( ) "HsapDv:0000015") +AnnotationAssertion(Annotation( ) "MmusDv:0000018") AnnotationAssertion( "OGES:000005") AnnotationAssertion( "OGES:000032") AnnotationAssertion( "Wikipedia:Organogenesis") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000094") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000028") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000055") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000022") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000086") AnnotationAssertion( "uberon") AnnotationAssertion( "segmentation stage") AnnotationAssertion( "UBERON:0000111") @@ -167996,11 +168901,30 @@ AnnotationAssertion( "BTO:0002168") AnnotationAssertion( "EFO:0001300") AnnotationAssertion( "EV:0300051") -AnnotationAssertion( "MmusDv:0000043") +AnnotationAssertion(Annotation( ) "HsapDv:0000264") +AnnotationAssertion(Annotation( ) "MmusDv:0000043") AnnotationAssertion( "OGES:000009") AnnotationAssertion( "XAO:1000010") AnnotationAssertion( "XtroDO:0000083") AnnotationAssertion( "ZFS:0000051") +AnnotationAssertion(Annotation( ) "obo:AcarDv_0000003") +AnnotationAssertion(Annotation( ) "obo:BtauDv_0000003") +AnnotationAssertion(Annotation( ) "obo:CfamDv_0000003") +AnnotationAssertion(Annotation( ) "obo:CporDv_0000003") +AnnotationAssertion(Annotation( ) "obo:EcabDv_0000003") +AnnotationAssertion(Annotation( ) "obo:FcatDv_0000003") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000003") +AnnotationAssertion(Annotation( ) "obo:GgorDv_0000003") +AnnotationAssertion(Annotation( ) "obo:MdomDv_0000003") +AnnotationAssertion(Annotation( ) "obo:MmulDv_0000003") +AnnotationAssertion(Annotation( ) "obo:OanaDv_0000003") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000003") +AnnotationAssertion(Annotation( ) "obo:OcunDv_0000003") +AnnotationAssertion(Annotation( ) "obo:PpanDv_0000003") +AnnotationAssertion(Annotation( ) "obo:PtroDv_0000003") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000012") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000041") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000003") AnnotationAssertion(Annotation( "VHOG:FB") "immature stage") AnnotationAssertion(Annotation( "XAO:1000010") "juvenile stage") AnnotationAssertion( "uberon") @@ -168021,12 +168945,31 @@ AnnotationAssertion( "BILS:0000113") AnnotationAssertion( "EV:0300064") AnnotationAssertion( "EV:0300070") +AnnotationAssertion(Annotation( ) "HsapDv:0000258") AnnotationAssertion( "MIAA:0000403") -AnnotationAssertion( "MmusDv:0000110") +AnnotationAssertion(Annotation( ) "MmusDv:0000110") AnnotationAssertion( "OGES:000026") AnnotationAssertion( "OGES:000027") AnnotationAssertion( "XAO:1000093") AnnotationAssertion( "ZFS:0000044") +AnnotationAssertion(Annotation( ) "obo:AcarDv_0000004") +AnnotationAssertion(Annotation( ) "obo:BtauDv_0000004") +AnnotationAssertion(Annotation( ) "obo:CfamDv_0000004") +AnnotationAssertion(Annotation( ) "obo:CporDv_0000004") +AnnotationAssertion(Annotation( ) "obo:EcabDv_0000004") +AnnotationAssertion(Annotation( ) "obo:FcatDv_0000004") +AnnotationAssertion(Annotation( ) "obo:GgalDv_0000006") +AnnotationAssertion(Annotation( ) "obo:GgorDv_0000006") +AnnotationAssertion(Annotation( ) "obo:MdomDv_0000006") +AnnotationAssertion(Annotation( ) "obo:MmulDv_0000021") +AnnotationAssertion(Annotation( ) "obo:OanaDv_0000004") +AnnotationAssertion(Annotation( ) "obo:OariDv_0000006") +AnnotationAssertion(Annotation( ) "obo:OcunDv_0000004") +AnnotationAssertion(Annotation( ) "obo:PpanDv_0000016") +AnnotationAssertion(Annotation( ) "obo:PtroDv_0000011") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000015") +AnnotationAssertion(Annotation( ) "obo:SsalDv_0000042") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000006") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000113") AnnotationAssertion( ) @@ -168733,6 +169676,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (mouth) AnnotationAssertion(Annotation( "Wikipedia:Mouth") Annotation( "https://github.com/obophenotype/uberon/wiki/The-digestive-tract") "The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks).") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0010355") Annotation( "AAO") Annotation( "AAO:BJB") "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000812") Annotation( "VHOG") Annotation( "DOI:10.1038/nature07309 Hejnol A, Martindale MQ, Acoel development indicates the independent evolution of the bilaterian mouth and anus. Nature (2008)") Annotation( "http://bgee.unil.ch/") "Molecular and developmental cell lineage data suggest that the acoel mouth opening is homologous to the mouth of protostomes and deuterostomes and that the last common ancestor of the Bilateria (the 'urbilaterian') had only this single digestive opening.[well established][VHOG]") AnnotationAssertion( "oral") @@ -168784,6 +169728,7 @@ AnnotationAssertion(Annotation( "BTO:0001090") "vestibulum oris") AnnotationAssertion( "UBERON:0000165") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -171517,11 +172462,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right testicular vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (left testicular vein) @@ -171542,11 +172487,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left testicular vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymphoid follicle) @@ -171696,11 +172641,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cavernous artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endocervix) @@ -172371,6 +173316,47 @@ AnnotationAssertion(rdfs:label " SubClassOf(Annotation( "CARO") ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (basal lamina of epithelium) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0001-9114-8737") "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue.") +AnnotationAssertion( "this class represents a continuous sheet of basal lamina which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'basal lamina' represents a portion of substance on the scale of a single cell.") +AnnotationAssertion( ) +AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0001592") Annotation( "VHOG") Annotation( "ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.57") Annotation( "http://bgee.unil.ch/") "A basal lamina is certainly present in Bilateria and was evaluated as an autapomorphy of this taxon.[well established][VHOG]") +AnnotationAssertion( "AAO:0010269") +AnnotationAssertion( "AEO:0000065") +AnnotationAssertion( "BILA:0000065") +AnnotationAssertion( "CARO:0000065") +AnnotationAssertion( "EHDAA2:0003065") +AnnotationAssertion( "FMA:62918") +AnnotationAssertion( "HAO:0000065") +AnnotationAssertion( "MESH:D001485") +AnnotationAssertion( "NCIT:C32186") +AnnotationAssertion( "NIF_Subcellular:sao1397492660") +AnnotationAssertion( "TAO:0001485") +AnnotationAssertion( "TGMA:0001850") +AnnotationAssertion(Annotation( "ncithesaurus:Basal_Lamina") "UMLS:C0085872") +AnnotationAssertion( "VHOG:0001592") +AnnotationAssertion( "WBbt:0005756") +AnnotationAssertion( "Wikipedia:Basal_lamina") +AnnotationAssertion( "XAO:0003163") +AnnotationAssertion( "ZFA:0001485") +AnnotationAssertion(Annotation( "FMA:62918") "basal lamina of connective tissue") +AnnotationAssertion( "uberon") +AnnotationAssertion(Annotation( "CARO:0000065") "basal lamina") +AnnotationAssertion(Annotation( "VHOG:0001592") Annotation( ) "basal laminae") +AnnotationAssertion(Annotation( "Wikipedia:Basal_lamina") Annotation( ) "lamina basalis") +AnnotationAssertion( "UBERON:0000482") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "basal lamina of epithelium") +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Basal_lamina.jpg"^^xsd:anyURI) +SubClassOf(Annotation( "FMA") ) +SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (epithelium) AnnotationAssertion(Annotation( "Wikipedia:Epithelium") Annotation( "http://orcid.org/0000-0001-9114-8737") "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO].") @@ -173263,6 +174249,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "ISBN:0471209627") Annotation( "ISBN:0471888893") "Cranial nerve fiber tract which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA].") AnnotationAssertion( "Do not classify under 'cranial nerve', as this is not a true nerve - should be classified as evaginated sensory afferent[ISBN:0471888893]") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0000435") Annotation( "TAO") Annotation( "ZFIN:curator") "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)[TAO]") AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0010345") Annotation( "AAO") Annotation( "AAO:EJS") "Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO]") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000543") Annotation( "VHOG") Annotation( "ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429, http://medical-dictionary.thefreedictionary.com/optic+stalk") Annotation( "http://bgee.unil.ch/") "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup (reference 1); The (optic) stalk persists as the optic nerve (reference 2).[well established][VHOG]") @@ -173309,6 +174296,7 @@ AnnotationAssertion(Annotation( "TAO:0000435") "optic") AnnotationAssertion( "UBERON:0000941") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -174631,12 +175619,12 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "axillary vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pons) @@ -175715,6 +176703,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "BIRNLEX:844") Annotation( "ISBN:0-14-051288-8") Annotation( "ISBN:3110148986") Annotation( "NLM:nervous+system") Annotation( "WB:rynl") Annotation( "Wikipedia:Nervous_system") Annotation( "ZFIN:curator") "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO].") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0000396") Annotation( "TAO") Annotation( "ZFIN:curator") "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO]") AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0000324") Annotation( "AAO") Annotation( "AAO:BJB") "Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000402") Annotation( "VHOG") Annotation( "ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.117") Annotation( "http://bgee.unil.ch/") "Nervous systems evolved in the ancestor of Eumetazoa.[well established][VHOG]") @@ -175754,6 +176743,7 @@ AnnotationAssertion(Annotation( "UBERON:0001016") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -176033,6 +177023,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (sensory system) AnnotationAssertion(Annotation( "Wikipedia:Sensory_system") "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0001674") Annotation( "VHOG") Annotation( "DOI:10.1073/pnas.97.9.4449 Shimeld SM and Holland PW. Vertebrate innovations. PNAS (2000)") Annotation( "http://bgee.unil.ch/") "An early step in the evolution of neural crest, therefore, may have been the origin of a specific dorsal neural cell population contributing to sensory processing; this would predate the divergence of the amphioxus and vertebrate lineages.[well established][VHOG]") AnnotationAssertion( "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs") AnnotationAssertion( "AAO:0000555") @@ -176064,6 +177055,7 @@ AnnotationAssertion( "FMA:75259") "set of sense organs") AnnotationAssertion( "UBERON:0001032") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -176078,6 +177070,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (gustatory system) AnnotationAssertion(Annotation( "NLXANAT:090803") "The sensory system for the sense of taste.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "NLXANAT:090803") "The sensory system for the sense of taste[NLXANAT:090803].") AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0010577") Annotation( "AAO") Annotation( "AAO:EJS") "The sensory system used for the sense of taste.[AAO]") AnnotationAssertion( "gustatory") @@ -176101,6 +177094,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001033") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -176381,6 +177375,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "GO:0007431") Annotation( "Wikipedia:Salivary_gland") "Saliva-secreting exocrine glands of the oral cavity[GO].") AnnotationAssertion(Annotation( "3") "currently we define saliva and salivary glands very generally in functional terms but it may be more appropriate to split this class. From WP: In most vertebrates, saliva does not contain any enzymes, consisting of mucus and water only, and its primary function is to moisten food while eating. As a result, true salivary glands are rarely found in fish or aquatic tetrapods, although there are often individual mucus-secreting cells. Amphibians have a single salivary gland, the intermaxillary gland, located in the forward part of the palate. Reptiles and birds normally have only very small glands on the lips, palate, and base of the mouth, although there are some birds with large glands, which produce a sticky saliva that helps in nest-building. The distinct parotid, submandibular, and sublingual glands are only developed in mammals.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000376") Annotation( "VHOG") Annotation( "http://bgee.unil.ch/") "A gland that produces the saliva. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-25, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000376") Annotation( "VHOG") Annotation( "ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptationm(2005) p.211") Annotation( "http://bgee.unil.ch/") "In air-feeding animals, the lack of water column to lubricate the food has been compensated for by the evolution of the salivary glands. These glands are present only in amniotes and are controlled by the parasympathetic system.[well established][VHOG]") AnnotationAssertion( "The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research. The salivary glands of some species are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands") @@ -176410,6 +177405,7 @@ AnnotationAssertion(Annotation( "UBERON:0001044") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -177002,11 +177998,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior vena cava") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses(Annotation( "lexical") ) # Class: (ileocecal junction) @@ -177946,6 +178942,7 @@ AnnotationAssertion( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -178573,12 +179570,12 @@ AnnotationAssertion( "superior mesenteric vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia:Vitelline_vein") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (common iliac vein) @@ -178609,7 +179606,7 @@ SubClassOf(Annotation( "MA" SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA-abduced-lr") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal vein) @@ -178645,11 +179642,11 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (right renal vein) @@ -178671,9 +179668,9 @@ AnnotationAssertion( "right renal vein") AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (left renal vein) @@ -178696,9 +179693,9 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hepatic vein) @@ -178732,13 +179729,13 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hepatic vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA-abduced-lr") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (testicular vein) @@ -178771,14 +179768,14 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "testicular vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray590.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (ovarian vein) @@ -178810,12 +179807,12 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ovarian vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cf/Ovarschaf.jpg"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (suprarenal vein) @@ -178837,10 +179834,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "suprarenal vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cystic duct) @@ -179726,10 +180723,10 @@ AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (inferior mesenteric artery) @@ -179763,12 +180760,12 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal artery) @@ -179812,10 +180809,10 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "dorsal aorta in Kardong") Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (right renal artery) @@ -179840,9 +180837,9 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (left renal artery) @@ -179865,9 +180862,9 @@ AnnotationAssertion(rdfs:comment AnnotationAssertion(rdfs:label "left renal artery") AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (testicular artery) @@ -179896,10 +180893,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "testicular artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (right testicular artery) @@ -179918,11 +180915,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right testicular artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (left testicular artery) @@ -179941,11 +180938,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left testicular artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ovarian artery) @@ -179969,11 +180966,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ovarian artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (common iliac artery) @@ -180032,10 +181029,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hepatic artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Common_and_proper_hepatic_artery.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (splenic artery) @@ -180066,11 +181063,11 @@ AnnotationAssertion(rdfs:seeAlso AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (middle colic artery) @@ -180096,11 +181093,11 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mucosa of stomach) @@ -180653,10 +181650,10 @@ AnnotationAssertion( "inferior mesenteric vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA/obol") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (jejunal vein) @@ -180674,11 +181671,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "jejunal vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "FMA") ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA/obol") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ileal vein) @@ -180696,11 +181693,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ileal vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (middle colic vein) @@ -180723,11 +181720,11 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ileocolic vein) @@ -180751,12 +181748,12 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (transversus abdominis muscle) @@ -183688,10 +184685,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior vesical artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/1/13/Inferiorvesical.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (superior vesical artery) @@ -183716,12 +184713,12 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior vesical artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/02/Internal_iliac_branches.PNG"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (obturator artery) @@ -183772,7 +184769,7 @@ AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif"^^xsd:anyURI) SubClassOf(Annotation( "MA") ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (internal iliac vein) @@ -183804,7 +184801,7 @@ AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) SubClassOf(Annotation( "MA") ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (inferior vesical vein) @@ -183819,9 +184816,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior vesical vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") Annotation( "MA") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vaginal vein) @@ -184634,11 +185631,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medial circumflex femoral artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebrospinal fluid) @@ -185268,13 +186265,13 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "axillary artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/8/88/Axillary_limits.PNG"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (subscapular artery) @@ -185721,6 +186718,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "GO_REF:0000034") Annotation( "VSAO:0000027") Annotation( "http://dx.plos.org/10.1371/journal.pone.0051070") "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system.") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0000434") Annotation( "TAO") Annotation( "TAO:wd") "Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO]") AnnotationAssertion(Annotation( "2012-08-14") Annotation( "VSAO:0000027") Annotation( "VSAO") Annotation( "GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070") Annotation( "PSPUB:0000170") "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system.[VSAO]") AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0000566") Annotation( "AAO") Annotation( "AAO:LAP") "System that provides physical support to the organism.[AAO]") @@ -185748,6 +186746,7 @@ AnnotationAssertion( "BTO:0001486") "Skelettsystem") AnnotationAssertion( "UBERON:0001434") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -188222,11 +189221,11 @@ SubClassOf( "MA") ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "cjm") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (subclavian artery) @@ -188272,9 +189271,9 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (right subclavian artery) @@ -188338,8 +189337,8 @@ AnnotationAssertion(rdfs:comment AnnotationAssertion(rdfs:label "vertebral artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/f/ff/Vertebral_artery.png"^^xsd:anyURI) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (left common carotid artery plus branches) @@ -188544,11 +189543,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dorsal metatarsal vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (medial marginal vein) @@ -188586,8 +189585,8 @@ AnnotationAssertion(rdfs:label " SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney arcuate artery) @@ -189243,11 +190242,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anterior vena cava") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b4/Venenwinkel.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (internal jugular vein) @@ -189280,8 +190279,8 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray562.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (subclavian vein) @@ -189314,7 +190313,7 @@ AnnotationAssertion( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thymic vein) @@ -189336,11 +190335,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thymic vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (bronchial vein) @@ -189361,10 +190360,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bronchial vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (venous plexus) @@ -189944,13 +190943,13 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lingual artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA-abduced-lr") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "AA") Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sublingual artery) @@ -189977,11 +190976,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sublingual artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (facial artery) @@ -190004,10 +191003,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "facial artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (occipital artery) @@ -190029,11 +191028,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "occipital artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (maxillary artery) @@ -190088,11 +191087,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mental artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ophthalmic artery) @@ -190159,10 +191158,10 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "proximal portion") Annotation( "ISBN:0781772214") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (coronary artery) @@ -190196,7 +191195,7 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lacrimal artery) @@ -190218,11 +191217,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lacrimal artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (anterior cerebral artery) @@ -190465,9 +191464,9 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (superior cerebellar artery) @@ -190490,13 +191489,13 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior cerebellar artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (posterior cerebral artery) @@ -190521,15 +191520,15 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "posterior cerebral artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA-abduced-lr") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (artery) @@ -191276,11 +192275,11 @@ AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (left pulmonary artery) @@ -191309,11 +192308,11 @@ AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (facial vein) @@ -191370,12 +192369,12 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebral vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/9f/Gray568.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (triceps surae) @@ -191457,10 +192456,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebellar vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (masseteric vein) @@ -191476,10 +192475,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "masseteric vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (trigeminal ganglion) @@ -193239,6 +194238,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "FEED:rd") Annotation( "https://github.com/obophenotype/uberon/issues/256") "A muscular organ in the floor of the mouth.") AnnotationAssertion( "in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000419") Annotation( "VHOG") Annotation( "http://bgee.unil.ch/") Annotation( "http://medical-dictionary.thefreedictionary.com/tongue") "A mobile mass of muscular tissue that is covered with mucous membrane, occupies much of the cavity of the mouth, forms part of its floor, bears the organ of taste, and assists in chewing and swallowing. [TFD][VHOG]") AnnotationAssertion(Annotation( "2012-07-02") Annotation( "FEED") Annotation( "http://www.feedexp.org") "Muscular organ in the floor of the mouth.[FEED]") AnnotationAssertion(Annotation( "GO:0043586") "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO][GO:0043586].") @@ -193273,6 +194273,7 @@ AnnotationAssertion( "Wikipedia:Tongue") "glossus") AnnotationAssertion( "UBERON:0001723") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -193413,6 +194414,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (nasopharynx) AnnotationAssertion(Annotation( "MGI:cwg") Annotation( "MP:0002251") "The section of the pharynx that lies above the soft palate.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000375") Annotation( "VHOG") Annotation( "http://bgee.unil.ch/") Annotation( "http://medical-dictionary.thefreedictionary.com/nasopharynx") "The uppermost of the three regions of the throat (pharynx), situated behind the nasal cavity and extending from the posterior nares to the level above the soft palate. [TFD][VHOG]") AnnotationAssertion( "nasopharyngeal") AnnotationAssertion( "In humans - in front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane") @@ -193439,6 +194441,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Pharynx") "epipharynx") AnnotationAssertion(Annotation( "Wikipedia:Nasopharynx") Annotation( ) "pars nasalis pharyngis") AnnotationAssertion( "UBERON:0001728") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -196717,6 +197720,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "ISBN:0013002015") Annotation( "Wikipedia:Gingiva") "The fibrous investing tissue, covered by keratinized epithelium, that immediately surrounds a tooth and is contiguous with its periodontal ligament and with the mucosal tissues of the mouth[Glossary of Periodontal Terms 2001].") AnnotationAssertion( "FMA has a 3-level breakdown of jaws into: region, jaw (skeleton+gums), skeleton.") +AnnotationAssertion( ) AnnotationAssertion( "gingival") AnnotationAssertion( "BTO:0000519") AnnotationAssertion( "CALOHA:TS-2074") @@ -196740,6 +197744,7 @@ AnnotationAssertion( "gingival mucosa") AnnotationAssertion( "UBERON:0001828") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -196756,6 +197761,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (major salivary gland) AnnotationAssertion(Annotation( "MP:0003792") "One of the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "ISBN:0123813611") "There are 3 pairs of major salivary glands in human and mouse") AnnotationAssertion( "FMA:59788") AnnotationAssertion( "MA:0002478") @@ -196765,6 +197771,7 @@ AnnotationAssertion(Annotation( "galen:MajorSalivaryGland") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001829") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -196777,6 +197784,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (minor salivary gland) AnnotationAssertion(Annotation( "MP:0003791") Annotation( "Wikipedia:Salivary_gland#Minor_Salivary_Glands") "One of the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP].") +AnnotationAssertion( ) AnnotationAssertion( "EMAPA:35574") AnnotationAssertion( "FMA:59789") AnnotationAssertion( "GAID:940") @@ -196789,6 +197797,7 @@ AnnotationAssertion( "galen:MinorSalivaryGland") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001830") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -202453,8 +203462,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medulla of lymph node") -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -202508,11 +203517,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thoracodorsal artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pulmonary artery) @@ -202557,16 +203566,16 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") Annotation( "XAO") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (kidney capsule) @@ -202646,14 +203655,14 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (portal vein) @@ -203206,7 +204215,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (arrector muscle of hair) AnnotationAssertion(Annotation( "DOI:10.1016/j.cub.2008.12.005") "A tiny smooth muscle that connects the hair follicle with the dermis.") -AnnotationAssertion( ) AnnotationAssertion( "When contracted the arrector pili causes the raising of the hair") AnnotationAssertion( "BTO:0005132") AnnotationAssertion( "EMAPA:26775") @@ -203227,7 +204235,6 @@ AnnotationAssertion(Annotation( "BTO:0005132") "erectores pilorum") AnnotationAssertion(Annotation( "BTO:0005132") "pilomotor muscle") AnnotationAssertion( "UBERON:0002033") -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -203475,13 +204482,13 @@ AnnotationAssertion( "Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung.") AnnotationAssertion(rdfs:label "bronchial artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray1032.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymphatic vessel endothelium) @@ -203925,10 +204932,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "phrenic artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (main ciliary ganglion) @@ -205022,11 +206029,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thoracodorsal vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA/obol") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (postcranial axial skeleton) @@ -205562,6 +206569,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (visual system) AnnotationAssertion(Annotation( "NIFSTD:FMAID_7191") "The sensory system subserving the sense of vision.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0000632") Annotation( "AAO") Annotation( "AAO:EJS") "The sensory system used for sight.[AAO]") AnnotationAssertion( "UBERON:0007036") AnnotationAssertion( "AAO:0000632") @@ -205581,6 +206589,7 @@ AnnotationAssertion(Annotation( "visual organ system") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002104") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -206165,6 +207174,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right ovary") +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/ovary-female-right/v1.3/assets/3d-vh-f-ovary-r.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -206186,6 +207196,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left ovary") +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/ovary-female-left/v1.3/assets/3d-vh-f-ovary-l.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -208123,8 +209134,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "capsule of lymph node") -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/92/Lymphknoten_(Schwein).jpg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -210240,9 +211251,9 @@ SubClassOf(Annotation( "ZFA SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (periventricular zone of hypothalamus) @@ -211861,6 +212872,7 @@ DisjointClasses( ObjectSomeValues # Class: (exocrine system) AnnotationAssertion(Annotation( "Wikipedia:Exocrine_gland") "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia].") +AnnotationAssertion( ) AnnotationAssertion( "CALOHA:TS-2057") AnnotationAssertion( "EHDAA2:0002225") AnnotationAssertion( "EMAPA:35329") @@ -211873,6 +212885,7 @@ AnnotationAssertion( "EHDAA2:0002225") "exocrine glandular system") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002330") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -216029,8 +217042,8 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray522.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intersomitic artery) @@ -216080,10 +217093,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "spinal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (inferior palpebral vein) @@ -216107,9 +217120,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "inferior palpebral vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vesical vein) @@ -216131,11 +217144,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vesical vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (anterior abdominal wall muscle) @@ -216986,17 +217999,17 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "uterine artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA-abduced-lr") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (papillary muscle of heart) @@ -217384,8 +218397,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesenteric lymph node") -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "FMA") ) @@ -220682,8 +221695,8 @@ AnnotationAssertion(rdfs:label " EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (rostral intralaminar nuclear group) @@ -226435,6 +227448,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (cardiac muscle of left atrium) AnnotationAssertion(Annotation( "OBOL:automatic") "A portion of cardiac muscle tissue that is part of a left atrium [Automatically generated definition].") +AnnotationAssertion( ) AnnotationAssertion( "EHDAA2:0004154") AnnotationAssertion( "EMAPA:17320") AnnotationAssertion( "FMA:7285") @@ -226455,6 +227469,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "textus muscularis of myocardium of left cardiac atrium") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003380") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cardiac muscle of left atrium") @@ -226861,6 +227876,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (gland of digestive tract) AnnotationAssertion(Annotation( "OBOL:automatic") "A gland that is part of a digestive tract [Automatically generated definition].") +AnnotationAssertion( ) AnnotationAssertion( "EMAPA:18815") AnnotationAssertion( "MA:0003202") AnnotationAssertion(Annotation( "OBOL:automatic") "digestive tract gland") @@ -226870,6 +227886,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "lower gastrointestinal tract gland") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003408") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "gland of digestive tract") @@ -228105,11 +229122,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ureteric segment of renal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (respiratory system artery) @@ -228145,12 +229162,12 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "artery of upper lip") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (artery of lower lip) @@ -228172,12 +229189,12 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "artery of lower lip") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebellar artery) @@ -228196,12 +229213,12 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebellar artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thoracic cavity artery) @@ -228234,10 +229251,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "meningeal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ureteric vein) @@ -228271,10 +229288,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "respiratory system venous blood vessel") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vein of upper lip) @@ -228294,10 +229311,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vein of upper lip") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vein of lower lip) @@ -228319,10 +229336,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vein of lower lip") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thoracic cavity vein) @@ -234161,6 +235178,7 @@ SubClassOf(Annotation( "FMA AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "A mucous membrane that lines the mouth.") AnnotationAssertion( "this is defined as any mucous membrane of the mouth - including palate, lips, uvula, etc. ncit split mouth/oral mucosa into lip and buccal. In future we may split into masticatory/keratinized (gingiva + hard palate) vs lining/non-keratinized (lips, cheeks, floor of mouth, soft palate). FMA distinguishes between mucosa of mouth and region of mouth (the latter including the buccal mucosa)") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "Wikipedia:Oral_mucosa") "the mucous membrane epithelium of the mouth. It can be divided into three categories: masticatory, lining, and specialized[Wikipedia:Oral_mucosa].") AnnotationAssertion( "BTO:0002860") AnnotationAssertion( "CALOHA:TS-0716") @@ -234186,6 +235204,7 @@ AnnotationAssertion(Annotation( "GAID:951") "oral mucosa") AnnotationAssertion(Annotation( "Wikipedia:Oral_mucosa") Annotation( ) "tunica mucosa oris") AnnotationAssertion( "UBERON:0003729") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -234882,10 +235901,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thyroid artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (gonadal vein) @@ -240623,13 +241642,13 @@ AnnotationAssertion( "cardiac vein") AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf(Annotation( "FMA") ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (coronary sinus valve) @@ -246348,11 +247367,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebral artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (trunk or cervical vertebra) @@ -246515,11 +247534,13 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (entire sense organ system) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "Sum of all sensory systems in an organism.") +AnnotationAssertion( ) AnnotationAssertion( "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs") AnnotationAssertion( "FMA:78499") AnnotationAssertion(Annotation( "FMA:78499") "sense organ system") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004456") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -247633,8 +248654,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymph vasculature") -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -248686,15 +249707,14 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal afferent arteriole") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png"^^xsd:anyURI) -SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal efferent arteriole) @@ -250028,7 +251048,7 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (septum pellucidum) @@ -251692,6 +252712,72 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (respiratory system basal lamina) + +AnnotationAssertion(Annotation( "OBOL:automatic") "A basal lamina that is part of a respiratory system [Automatically generated definition].") +AnnotationAssertion(Annotation( "MA:th") "EMAPA:37571") +AnnotationAssertion( "MA:0001816") +AnnotationAssertion(Annotation( "OBOL:automatic") "apparatus respiratorius basal lamina") +AnnotationAssertion(Annotation( "OBOL:automatic") "apparatus respiratorius basal lamina of connective tissue") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of apparatus respiratorius") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of connective tissue of apparatus respiratorius") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of connective tissue of respiratory system") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of respiratory system") +AnnotationAssertion(Annotation( "OBOL:automatic") "respiratory system basal lamina of connective tissue") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0004798") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "respiratory system basal lamina") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (trachea basal lamina) + +AnnotationAssertion(Annotation( "OBOL:automatic") "A basal lamina that is part of a respiratory airway [Automatically generated definition].") +AnnotationAssertion(Annotation( "MA:th") "EMAPA:37553") +AnnotationAssertion( "MA:0001855") +AnnotationAssertion( "NCIT:C49303") +AnnotationAssertion(Annotation( "ncithesaurus:Trachea_Basal_Lamina") "UMLS:C1710454") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of connective tissue of respiratory airway") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0004799") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trachea basal lamina") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (bronchus basal lamina) + +AnnotationAssertion(Annotation( "OBOL:automatic") "A basal lamina that is part of a bronchus [Automatically generated definition].") +AnnotationAssertion(Annotation( "MA:th") "EMAPA:37810") +AnnotationAssertion( "MA:0001833") +AnnotationAssertion( "NCIT:C49207") +AnnotationAssertion(Annotation( "ncithesaurus:Bronchus_Basal_Lamina") "UMLS:C1707050") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of bronchi") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of bronchial trunk") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of bronchus") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of connective tissue of bronchi") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of connective tissue of bronchial trunk") +AnnotationAssertion(Annotation( "OBOL:automatic") "basal lamina of connective tissue of bronchus") +AnnotationAssertion(Annotation( "OBOL:automatic") "bronchi basal lamina") +AnnotationAssertion(Annotation( "OBOL:automatic") "bronchi basal lamina of connective tissue") +AnnotationAssertion(Annotation( "OBOL:automatic") "bronchial trunk basal lamina") +AnnotationAssertion(Annotation( "OBOL:automatic") "bronchial trunk basal lamina of connective tissue") +AnnotationAssertion(Annotation( "OBOL:automatic") "bronchus basal lamina of connective tissue") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0004800") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bronchus basal lamina") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (cervix epithelium) AnnotationAssertion(Annotation( "OBOL:automatic") "An epithelium that is part of a uterine cervix [Automatically generated definition].") @@ -253163,7 +254249,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (neuron projection bundle connecting eye with brain) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila.") -AnnotationAssertion( ) AnnotationAssertion(Annotation( "BTO:0000966") "optic nerve") AnnotationAssertion( "BTO:0000966") AnnotationAssertion( "EV:0100351") @@ -253173,7 +254258,6 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004904") AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -257473,13 +258557,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "deferent duct artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thoracic vein) @@ -258424,13 +259508,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal cortex artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "MA") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal cortex vein) @@ -258445,13 +259529,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal cortex vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "MA") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal cortex interstitium) @@ -262651,11 +263735,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vitelline vein") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray475.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (glossopharyngeal neural crest) @@ -263631,7 +264715,7 @@ AnnotationAssertion(rdfs:label " SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (iliac vein) @@ -263651,7 +264735,7 @@ AnnotationAssertion( "iliac vein") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (inner canthus) @@ -263753,10 +264837,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesenteric artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenteric vein) @@ -263778,10 +264862,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesenteric vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (secondary palatal shelf) @@ -263900,10 +264984,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "suprarenal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tubotympanic recess lumen) @@ -267425,6 +268509,7 @@ SubClassOf( "MP:0009759") "The area located in the bottom of the permanent portion of a resting (telogen) hair follicle where the cells of the external root sheath of the hair follicle are contiguous with the basal layer of the epidermis; this portion of the follicle is involved in the generation of a new hair at the onset of the hair growth cycle (anagen) and contains the hair follicle stem cells.") AnnotationAssertion( "add cell type to CL") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "DOI:10.1016/j.cub.2008.12.005") "Convex protrusion of the outer root sheath in the most distal permanent portion of the hair follicle, just below the sebaceous gland and at the insertion site of the muscle arrector pili. Contains the hair follicle stem cells.") AnnotationAssertion( "BTO:0004904") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37876") @@ -267433,6 +268518,7 @@ AnnotationAssertion(Annotation( "DOI:10.1016/j.cub.2008.12.005") "bulge") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005975") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -267995,11 +269081,11 @@ AnnotationAssertion( "Development notes:; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult[MP:0010664]") AnnotationAssertion(rdfs:label "vitelline artery") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "ventral branch") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (integumentary adnexa) @@ -271265,10 +272351,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epigastric artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (superior vesical vein) @@ -271282,9 +272368,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior vesical vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") Annotation( "MA") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epigastric vein) @@ -271299,10 +272385,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epigastric vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ureteric bud tip) @@ -272672,10 +273758,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "musculo-phrenic artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (coracoid process of scapula) @@ -273870,6 +274956,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (epithelium of conjunctiva) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "Layer of nonkeratinized squamous epithelium lining the conjunctiva, overlying scleral tissue.") +AnnotationAssertion( ) AnnotationAssertion( "BTO:0005131") AnnotationAssertion( "EFO:0001916") AnnotationAssertion( "FMA:62131") @@ -273880,6 +274967,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "UBERON:0006763") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -276906,10 +277994,13 @@ AnnotationAssertion( "EVM:2990031") AnnotationAssertion( "FBdv:00005333") AnnotationAssertion( "FMA:63631") +AnnotationAssertion(Annotation( ) "HsapDv:0000037") AnnotationAssertion( "MIAA:0000399") -AnnotationAssertion( "MmusDv:0000031") +AnnotationAssertion(Annotation( ) "MmusDv:0000031") AnnotationAssertion( "OGES:000023") AnnotationAssertion( "SCTID:367619004") +AnnotationAssertion(Annotation( ) "obo:RnorDv_0000011") +AnnotationAssertion(Annotation( ) "obo:SscrDv_0000080") AnnotationAssertion(Annotation( "MIAA:0000399") "embryo late (growth) stage") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") Annotation( ) "fetal stage") AnnotationAssertion(Annotation( "MIAA:0000399") "fetus") @@ -284209,10 +285300,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vesical artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pudendal vein) @@ -284246,9 +285337,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left pulmonary vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (right pulmonary vein) @@ -284264,9 +285355,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right pulmonary vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal straight tubule) @@ -286777,10 +287868,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "auricular artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (artery of lip) @@ -286794,10 +287885,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "artery of lip") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (midbrain nucleus) @@ -288099,10 +289190,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "interlobar artery") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (interlobar vein) @@ -288123,11 +289214,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "interlobar vein") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (secondary heart field) @@ -289244,6 +290335,7 @@ SubClassOf(Annotation( "cjm # Class: (oral gland) AnnotationAssertion(Annotation( "ISBN:0073040584") "Gland of the epithelium lining the oral cavity. The most common are the salivary glands.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "EHDAA2") "Note that Kardong classifies lacrimal glands here. EHDAA2 includes pituitary primordium, as this develops from oral mucosa") AnnotationAssertion( "UBERON:0003293") AnnotationAssertion( "EHDAA2:0001327") @@ -289259,6 +290351,7 @@ AnnotationAssertion( "oral cavity gland") AnnotationAssertion( "oral region gland") AnnotationAssertion( "UBERON:0010047") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "oral gland") @@ -290469,10 +291562,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "genital artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hepatic portal system) @@ -292463,8 +293556,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "afferent lymphatic vessel") -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -292484,8 +293577,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "efferent lymphatic vessel") -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) SubClassOf( ) # Class: (spleen marginal sinus) @@ -292835,8 +293928,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymph node T cell domain") -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -295177,8 +296270,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymph node follicle") -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) -AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb"^^xsd:anyURI) +AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -296005,6 +297098,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intercostal pre-muscle mass") SubClassOf(Annotation( "EHDAA2") ) +SubClassOf( ) SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "cjm") ObjectSomeValuesFrom( )) SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) @@ -297299,7 +298393,6 @@ AnnotationAssertion(rdfs:label " EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "EHDAA2-abduced") ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -301831,6 +302924,20 @@ EquivalentClasses( ObjectIntersec SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ovary growing follicle) + +AnnotationAssertion(Annotation( "ncithesaurus:Growing_Follicle") "An ovarian follicle undergoing maturation.") +AnnotationAssertion( "EMAPA:35628") +AnnotationAssertion( "MA:0001708") +AnnotationAssertion( "NCIT:C32702") +AnnotationAssertion(Annotation( "ncithesaurus:Growing_Follicle") "UMLS:C1512279") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0012186") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ovary growing follicle") +SubClassOf(Annotation( "MA") ) + # Class: (phrenic vein) AnnotationAssertion(Annotation( "ncithesaurus:Phrenic_Vein") "The veins that run parallel to the phrenic arteries which include the two superior and two inferior phrenic veins.") @@ -301843,10 +302950,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "phrenic vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intercostal vein) @@ -301860,10 +302967,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intercostal vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intercostal space) @@ -301898,6 +303005,7 @@ AnnotationAssertion( "intercostal lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "FMA") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (ureteric bud trunk) @@ -304336,11 +305444,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vein of lip") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ligament of liver) @@ -304412,11 +305520,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "soleal vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "cjm") ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "cjm") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (gastrocnemius vein) @@ -304432,10 +305540,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "divided in medial gastrocnemius vein (vena medialis gastrocnemii), lateral gastrocnemius vein (vena lateralis gastrocnemii), and intergemellar vein (Vena intergemellaris), the vein ascending between the two heads of the gastrocnemius[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php]") AnnotationAssertion(rdfs:label "gastrocnemius vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "cjm") ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "cjm") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (early mesencephalic vesicle) @@ -304514,10 +305622,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "choroidal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (1st arch mandibular endoderm) @@ -306018,11 +307126,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "masseteric artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (anatomical line between inner canthi) @@ -306377,6 +307485,91 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (base of crypt of Lieberkuhn) + +AnnotationAssertion(Annotation( "UBERON:md") Annotation( "http://orcid.org/0000-0002-6601-2165") "The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. Stem cells in the crypts divide to form daughter cells. One daughter cell from each stem cell division is retained as a stem cell. The other becomes committed to differentiate along one of four pathways to become an enterocyte, enteroendocrine cell, goblet cell or Paneth cell.") +AnnotationAssertion(Annotation( "ISBN:9780521617147") "Clearly defined prolifieration zones found in mammals. Not observed in agnathostomes, larval amphibians. Described in advanced species of fish and adult amphibians.") +AnnotationAssertion( "basal portion of intestinal gland") +AnnotationAssertion( "base of intestinal gland") +AnnotationAssertion( "base part of epithelium of intestinal gland") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0013739") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "base of crypt of Lieberkuhn") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (wall of crypt of Lieberkuhn) + +AnnotationAssertion(Annotation( "UBERON:md") Annotation( "http://orcid.org/0000-0002-6601-2165") "The lateral parts of an intestinal crypt, continuous distally with the base and proximally with the intestinal villus epithelium.") +AnnotationAssertion( "wall of intestinal gland") +AnnotationAssertion( "wall part of epithelium of intestinal gland") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0013740") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "wall of crypt of Lieberkuhn") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (base of crypt of Lieberkuhn of large intestine) + +AnnotationAssertion(Annotation( "OBOL:automatic") "A base of crypt of Lieberkuhn that is part of a large intestine.") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0013741") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "base of crypt of Lieberkuhn of large intestine") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (wall of crypt of Lieberkuhn of large intestine) + +AnnotationAssertion(Annotation( "OBOL:automatic") "A wall of crypt of Lieberkuhn that is part of a large intestine.") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0013742") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "wall of crypt of Lieberkuhn of large intestine") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (base of crypt of Lieberkuhn of small intestine) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "The basal portion (further from lumen) of a intestinal crypt that is located in the small intestine.") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0013743") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "base of crypt of Lieberkuhn of small intestine") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (wall of crypt of Lieberkuhn of small intestine) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "The lateral parts of an intestinal crypt that is located in the small intestine, continuous distally with the base and proximally with the intestinal villus epithelium.") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0013744") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "wall of crypt of Lieberkuhn of small intestine") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (zona intermedia of adrenal gland) AnnotationAssertion(Annotation( "http://www.endotext.org/adrenal/adrenal1/adrenal1.html") "A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata.") @@ -309023,8 +310216,8 @@ AnnotationAssertion( "posterior auricular artery") SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (deep auricular artery) @@ -309042,8 +310235,8 @@ AnnotationAssertion(rdfs:label " EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (extraembryonic venous system) @@ -309362,9 +310555,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior palpebral vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (palpebral vein) @@ -309378,13 +310571,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "palpebral vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (palpebral artery) @@ -309396,12 +310589,12 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "palpebral artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (prosomere) @@ -311845,7 +313038,7 @@ SubClassOf(Annotation( "BTO SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "BTO") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endometrial blood vessel) @@ -315535,11 +316728,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "The arteries supplying the thymus are derived from the internal thoracic artery, and from the superior thyroid artery and inferior thyroids.[WP]") AnnotationAssertion(rdfs:label "thymic artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thyroid vein) @@ -315551,10 +316744,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thyroid vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cervical thymic artery) @@ -315564,9 +316757,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cervical thymic artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (meningeal vein) @@ -315579,10 +316772,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "meningeal vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (internal pudendal vein) @@ -315637,11 +316830,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "jejunal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lacrimal vein) @@ -315655,11 +316848,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lacrimal vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (submucosa of digestive tract) @@ -319116,10 +320309,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "rectal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (olfactory cortex layer 3) @@ -319998,10 +321191,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hypophysial artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mediastinal pleura) @@ -320233,13 +321426,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "esophageal artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "FMA") ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (deep lymphatic vessel) @@ -320268,10 +321461,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "uveal vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (colic artery) @@ -320283,10 +321476,10 @@ AnnotationAssertion( "colic artery") AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vasculature of integument) @@ -320705,11 +321898,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "parotid vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (secondary yolk sac cavity) @@ -321794,10 +322987,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vulval vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pelvic vein) @@ -321807,10 +323000,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pelvic vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (penis blood vessel) @@ -322444,11 +323637,11 @@ AnnotationAssertion( "cystic artery") AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb"^^xsd:anyURI) AnnotationAssertion( "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb"^^xsd:anyURI) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf(Annotation( "FMA") Annotation( "Wikipedia") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sigmoid vein) @@ -322458,11 +323651,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sigmoid vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic artery) @@ -322472,11 +323665,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pancreatic artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (urethral artery) @@ -322487,10 +323680,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "urethral artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (urethral vein) @@ -322501,11 +323694,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "urethral vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (right ovarian vein) @@ -322516,10 +323709,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right ovarian vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "FMA") ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (left ovarian vein) @@ -322530,9 +323723,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left ovarian vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "FMA") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (collection of hair on external ear) @@ -324615,11 +325808,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "left colic vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (right colic vein) @@ -324633,11 +325826,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "right colic vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (jejuno-ileal junction) @@ -324719,10 +325912,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymph node vein") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymph node artery) @@ -324736,10 +325929,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymph node artery") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (medullary arteriole of lymph node) @@ -325167,6 +326360,20 @@ EquivalentClasses( ObjectIntersec SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (intercostal element) + +AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6095-8718") "An anatomical structure located within an intercostal space.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-11-11T17:58:05Z"^^xsd:dateTime) +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8450004") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "intercostal element") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (placental blood) AnnotationAssertion(Annotation( "http://orcid.org/0000-0001-6595-0902") Annotation( "https://www.ncbi.nlm.nih.gov/books/NBK53254/") "Blood located in the placenta.") @@ -325585,12 +326792,11 @@ AnnotationAssertion(rdfs:label " EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (jejunum lamina propria) @@ -326193,9 +327399,9 @@ SubClassOf(Annotation( "requ SubClassOf(Annotation( "requires review") Annotation( "EHDAA2") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(Annotation( "may be present in other parts in other species") Annotation( "FMA") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) -SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) -SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) -SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(Annotation( "FMA") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) @@ -326613,6 +327819,8 @@ DisjointClasses(ObjectSomeValuesFrom( DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) @@ -326915,7 +328123,7 @@ SubObjectPropertyOf(ObjectPropertyChain( ) ) SubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) ) SubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) ) -DLSafeRule(Annotation(rdfs:comment "This can't be added as a property chain because it causes a circularity violation for 'part of'.") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "This can't be added as a property chain because it causes a circularity violation for 'part of'.") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "This can't be added as a property chain because it causes a circularity violation for 'part of'.") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "This can't be added as a property chain because it causes a circularity violation for 'part of'.") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "This can't be added as a property chain because it causes a circularity violation for 'part of'.") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "This can't be added as a property chain because it causes a circularity violation for 'part of'.") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) ) \ No newline at end of file diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index bf65f606..78403902 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2025-01-14") + +Annotation(owl:versionInfo "2025-01-15") Declaration(Class()) Declaration(Class())