From b84d60245320ae5a136b429fceaa680870f94b50 Mon Sep 17 00:00:00 2001 From: mazzalab Date: Mon, 18 Sep 2023 10:36:03 +0200 Subject: [PATCH] Update pipelines chunk number --- pipeline/fix_wipe_pairs_reads_parallel.smk | 2 +- pipeline/fix_wipe_single_reads_parallel.smk | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pipeline/fix_wipe_pairs_reads_parallel.smk b/pipeline/fix_wipe_pairs_reads_parallel.smk index 957153a..9bd2a53 100644 --- a/pipeline/fix_wipe_pairs_reads_parallel.smk +++ b/pipeline/fix_wipe_pairs_reads_parallel.smk @@ -32,7 +32,7 @@ checkpoint split_fastq: "Splitting {input} into chunks." shell:''' mkdir data/{wildcards.sample}_chunks - split -l 2000 --numeric-suffixes {input} data/{wildcards.sample}_chunks/chunk --additional-suffix=.fastq + split -l 500000000 --numeric-suffixes {input} data/{wildcards.sample}_chunks/chunk --additional-suffix=.fastq ''' rule wipe_fastq_parallel: diff --git a/pipeline/fix_wipe_single_reads_parallel.smk b/pipeline/fix_wipe_single_reads_parallel.smk index 3ad2e9c..e58b496 100644 --- a/pipeline/fix_wipe_single_reads_parallel.smk +++ b/pipeline/fix_wipe_single_reads_parallel.smk @@ -33,7 +33,7 @@ checkpoint split_fastq: "Splitting {input} into chunks." shell:''' mkdir data/{wildcards.sample}_chunks - split -l 2000 --numeric-suffixes {input} data/{wildcards.sample}_chunks/chunk --additional-suffix=.fastq + split -l 500000000 --numeric-suffixes {input} data/{wildcards.sample}_chunks/chunk --additional-suffix=.fastq '''