isotree/setup.py at master · lwj2015/isotree · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
try:
    from setuptools import setup
    from setuptools.extension import Extension
except:
    from distutils.core import setup
    from distutils.extension import Extension

import numpy as np
from Cython.Distutils import build_ext
from sys import platform
import sys, os, re
from os import environ
import cycereal

## https://stackoverflow.com/questions/724664/python-distutils-how-to-get-a-compiler-that-is-going-to-be-used
class build_ext_subclass( build_ext ):
    def build_extensions(self):
        c = self.compiler.compiler_type
        # TODO: add entries for intel's ICC
        if c == 'msvc': # visual studio
            for e in self.extensions:
                e.extra_compile_args = ['/openmp', '/O2', '/std:c++14']
                ### Note: MSVC never implemented C++11
        elif (c == "clang") or (c == "clang++"):
            for e in self.extensions:
                e.extra_compile_args = ['-fopenmp', '-O2', '-march=native', '-std=c++17']
                e.extra_link_args    = ['-fopenmp']
                ### Note: when passing C++11 to CLANG, it complains about C++17 features in CYTHON_FALLTHROUGH
        else: # gcc
            for e in self.extensions:
                e.extra_compile_args = ['-fopenmp', '-O2', '-march=native', '-std=c++11']
                e.extra_link_args    = ['-fopenmp']

                # e.extra_compile_args = ['-O2', '-march=native', '-std=c++11']

                ### for testing (run with `LD_PRELOAD=libasan.so python script.py`)
                # e.extra_compile_args = ["-std=c++11", "-fsanitize=address", "-static-libasan", "-ggdb"]
                # e.extra_link_args    = ["-fsanitize=address", "-static-libasan"]

                ### when testing for oneself
                # e.extra_compile_args += ["-Wno-sign-compare", "-Wno-switch", "-Wno-maybe-uninitialized"]

        ## Note: apple will by default alias 'gcc' to 'clang', and will ship its own "special"
        ## 'clang' which has no OMP support and nowadays will purposefully fail to compile when passed
        ## '-fopenmp' flags. If you are using mac, and have an OMP-capable compiler,
        ## comment out the code below, or set 'use_omp' to 'True'.
        if not use_omp:
            for e in self.extensions:
                e.extra_compile_args = [arg for arg in e.extra_compile_args if arg != '-fopenmp']
                e.extra_link_args    = [arg for arg in e.extra_link_args    if arg != '-fopenmp']

        build_ext.build_extensions(self)

use_omp = (("enable-omp" in sys.argv)
           or ("-enable-omp" in sys.argv)
           or ("--enable-omp" in sys.argv))
if use_omp:
    sys.argv = [a for a in sys.argv if a not in ("enable-omp", "-enable-omp", "--enable-omp")]
if environ.get('ENABLE_OMP') is not None:
    use_omp = True
if platform[:3] != "dar":
    use_omp = True

### Shorthand for apple computer:
### uncomment line below
# use_omp = True

setup(
    name  = "isotree",
    packages = ["isotree"],
    version = '0.1.19',
    description = 'Isolation-Based Outlier Detection, Distance, and NA imputation',
    author = 'David Cortes',
    author_email = 'david.cortes.rivera@gmail.com',
    url = 'https://github.com/david-cortes/isotree',
    keywords = ['isolation-forest', 'anomaly', 'outlier'],
    cmdclass = {'build_ext': build_ext_subclass},
    ext_modules = [Extension(
                                "isotree._cpp_interface",
                                sources=["isotree/cpp_interface.pyx", "src/fit_model.cpp", "src/isoforest.cpp",
                                         "src/extended.cpp", "src/helpers_iforest.cpp", "src/predict.cpp", "src/utils.cpp",
                                         "src/crit.cpp", "src/dist.cpp", "src/impute.cpp", "src/mult.cpp", "src/dealloc.cpp",
                                         "src/merge_models.cpp", "src/serialize.cpp"],
                                include_dirs=[np.get_include(), ".", "./src", cycereal.get_cereal_include_dir()],
                                language="c++",
                                install_requires = ["numpy", "pandas>=0.24.0", "cython", "scipy"],
                                define_macros = [("_USE_MERSENNE_TWISTER", None),
                                                 ("_ENABLE_CEREAL", None)]
                            )]
    )

if not use_omp:
    import warnings
    apple_msg  = "\n\n\nMacOS detected. Package will be built without multi-threading capabilities, "
    apple_msg += "due to Apple's lack of OpenMP support in default clang installs. In order to enable it, "
    apple_msg += "install the package directly from GitHub: https://www.github.com/david-cortes/isotree\n"
    apple_msg += "Using 'python setup.py install enable-omp'. "
    apple_msg += "You'll also need an OpenMP-capable compiler.\n\n\n"
    warnings.warn(apple_msg)