Merge pull request #212 from linkml/codespell-updates

Codespell inspired spelling fixes

Author: cmungall

linkml_model/model/schema/meta.yaml

@@ -1032,7 +1032,7 @@ slots:
     description: the refinement of a slot in the context of the containing class definition.
     comments:
       - >-
-        Many slots may be re-used across different classes, but the meaning of the slot may be refined by context.
+        Many slots may be reused across different classes, but the meaning of the slot may be refined by context.
         For example, a generic association model may use slots subject/predicate/object with generic semantics and
         minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may
         specify both local naming (e.g. subject=disease) and local constraints
@@ -2159,7 +2159,7 @@ slots:
       expansion.
 
       Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations
-      by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of
+      by parsing denormalized strings into complex objects (b) GENERATE: implement automated to_string labeling of
       complex objects
 
       For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot

linkml_model/sqlddl/meta.sql

@@ -120,7 +120,7 @@
 --     * Slot: last_updated_on Description: time at which the element was last updated
 --     * Slot: modified_by Description: agent that modified the element
 --     * Slot: status Description: status of the element
---     * Slot: string_serialization Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objectsFor example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm
+--     * Slot: string_serialization Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERATE: implement automated to_string labeling of complex objectsFor example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm
 --     * Slot: name Description: the unique name of the element within the context of the schema.  Name is combined with the default prefix to form the globally unique subject of the target class.
 --     * Slot: definition_uri Description: the "native" URI of the element
 --     * Slot: conforms_to Description: An established standard to which the element conforms.
@@ -164,7 +164,7 @@
 --     * Slot: last_updated_on Description: time at which the element was last updated
 --     * Slot: modified_by Description: agent that modified the element
 --     * Slot: status Description: status of the element
---     * Slot: string_serialization Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objectsFor example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm
+--     * Slot: string_serialization Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERATE: implement automated to_string labeling of complex objectsFor example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm
 --     * Slot: name Description: the unique name of the element within the context of the schema.  Name is combined with the default prefix to form the globally unique subject of the target class.
 --     * Slot: definition_uri Description: the "native" URI of the element
 --     * Slot: conforms_to Description: An established standard to which the element conforms.
@@ -362,7 +362,7 @@
 --     * Slot: last_updated_on Description: time at which the element was last updated
 --     * Slot: modified_by Description: agent that modified the element
 --     * Slot: status Description: status of the element
---     * Slot: string_serialization Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objectsFor example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm
+--     * Slot: string_serialization Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERATE: implement automated to_string labeling of complex objectsFor example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm
 --     * Slot: name Description: the unique name of the element within the context of the schema.  Name is combined with the default prefix to form the globally unique subject of the target class.
 --     * Slot: definition_uri Description: the "native" URI of the element
 --     * Slot: conforms_to Description: An established standard to which the element conforms.
@@ -420,7 +420,7 @@
 --     * Slot: last_updated_on Description: time at which the element was last updated
 --     * Slot: modified_by Description: agent that modified the element
 --     * Slot: status Description: status of the element
---     * Slot: string_serialization Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objectsFor example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm
+--     * Slot: string_serialization Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERATE: implement automated to_string labeling of complex objectsFor example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm
 --     * Slot: name Description: the unique name of the element within the context of the schema.  Name is combined with the default prefix to form the globally unique subject of the target class.
 --     * Slot: definition_uri Description: the "native" URI of the element
 --     * Slot: conforms_to Description: An established standard to which the element conforms.

tests/input/meta.yaml

@@ -953,7 +953,7 @@ slots:
     description: the refinement of a slot in the context of the containing class definition.
     comments:
       - >-
-        Many slots may be re-used across different classes, but the meaning of the slot may be refined by context.
+        Many slots may be reused across different classes, but the meaning of the slot may be refined by context.
         For example, a generic association model may use slots subject/predicate/object with generic semantics and
         minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may
         specify both local naming (e.g. subject=disease) and local constraints
@@ -1857,7 +1857,7 @@ slots:
       expansion.
 
       Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations
-      by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of
+      by parsing denormalized strings into complex objects (b) GENERATE: implement automated to_string labeling of
       complex objects
 
       For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot