Dockerfile

#FROM continuumio/anaconda3

FROM debian:latest

LABEL maintainer="Shmuel Maruani | LimitlessV | Limitless Virtue LLC"


ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
ENV PATH /opt/conda/bin:$PATH

# install
RUN apt-get update --fix-missing && apt-get install -y wget bzip2 ca-certificates \
    libglib2.0-0 libxext6 libsm6 libxrender1 \
    git mercurial subversion
#
RUN apt-get update \
	&& DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
	software-properties-common \
	&& apt-get update \
	&& DEBIAN_FRONTEND=noninteractive apt-get install -y \
	libfreetype6-dev \
	libicu-dev \
    libssl-dev \
	libjpeg62-turbo-dev \
	libmcrypt-dev \
	libedit-dev \
	libedit2 \
	libxslt1-dev \
	apt-utils \
	gnupg \
	redis-tools \
	mysql-client \
	git \
	vim \
	nano \
	wget \
	curl \
	lynx \
	psmisc \
	unzip \
	tar \
	bzip2 \
	cron \
	grep \
	sed \
	dpkg \
	bash-completion \
    && apt-get clean

RUN wget --quiet https://repo.anaconda.com/archive/Anaconda3-5.2.0-Linux-x86_64.sh -O ~/anaconda.sh && \
    /bin/bash ~/anaconda.sh -b -p /opt/conda && \
    rm ~/anaconda.sh && \
    ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
    echo "conda activate base" >> ~/.bashrc

RUN apt-get install -y curl grep sed dpkg && \
    TINI_VERSION=`curl https://github.com/krallin/tini/releases/latest | grep -o "/v.*\"" | sed 's:^..\(.*\).$:\1:'` && \
    curl -L "https://github.com/krallin/tini/releases/download/v${TINI_VERSION}/tini_${TINI_VERSION}.deb" > tini.deb && \
    dpkg -i tini.deb && \
    rm tini.deb && \
    apt-get clean


    # Use a fixed apt-get repo to stop intermittent failures due to flaky httpredir connections,
    # as described by Lionel Chan at http://stackoverflow.com/a/37426929/5881346
RUN sed -i "s/httpredir.debian.org/debian.uchicago.edu/" /etc/apt/sources.list && \
    apt-get update && apt-get install -y build-essential && \
    # https://stackoverflow.com/a/46498173
    conda update -y conda && conda update -y python && \
    pip install --upgrade pip && \
    apt-get -y install cmake

RUN pip install seaborn python-dateutil dask pytagcloud pyyaml joblib \
    husl geopy ml_metrics mne pyshp gensim && \
    conda install -y -c conda-forge spacy && python -m spacy download en && \
    python -m spacy download en_core_web_lg && \
    # The apt-get version of imagemagick is out of date and has compatibility issues, so we build from source
    apt-get -y install dbus fontconfig fontconfig-config fonts-dejavu-core fonts-droid ghostscript gsfonts hicolor-icon-theme \
    libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcap-ng0 libcroco3 \
    libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdbus-1-3 libdjvulibre-text libdjvulibre21 libfftw3-double3 libfontconfig1 \
    libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgomp1 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libijs-0.35 \
    libilmbase6 libjasper1 libjbig0 libjbig2dec0 libjpeg62-turbo liblcms2-2 liblqr-1-0 libltdl7 libmagickcore-6.q16-2 \
    libmagickcore-6.q16-2-extra libmagickwand-6.q16-2 libnetpbm10 libopenexr6 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 \
    libpaper-utils libpaper1 libpixman-1-0 libpng12-0 librsvg2-2 librsvg2-common libthai-data libthai0 libtiff5 libwmf0.2-7 \
    libxcb-render0 libxcb-shm0 netpbm poppler-data p7zip-full && \
    cd /usr/local/src && \
    wget http://transloadit.imagemagick.org/download/ImageMagick.tar.gz && \
    tar xzf ImageMagick.tar.gz && cd `ls -d ImageMagick-*` && pwd && ls -al && ./configure && \
    make -j $(nproc) && make install && \
    # clean up ImageMagick source files
    cd ../ && rm -rf ImageMagick*

RUN pip install seaborn python-dateutil dask pytagcloud pyyaml joblib \
    husl geopy ml_metrics mne pyshp gensim

# 'spacy' is a package and cannot be directly executed
RUN conda remove -y spacy
RUN conda install -y -c anaconda setuptools
RUN pip install spacy


# jupyter notebook
RUN echo "/opt/conda/bin/jupyter notebook --notebook-dir=/work --ip='*' --port=8888 --no-browser --allow-root" > ~/run_jupyter.sh
RUN chmod +x ~/run_jupyter.sh
#RUN ~/run_jupyter.sh
VOLUME /work
WORKDIR /work

# Define working directory.
#WORKDIR /data

# Define default command.
#CMD ["bash"]

ENTRYPOINT [ "/usr/bin/tini", "--" ]
CMD [ "/bin/bash" ]