Unknown process directive: validExitStatus

[MustafaElshani]

This seems to be an issue

logs are here

Check script '/root/.nextflow/assets/likelet/LncPipe/LncRNAanalysisPipe.nf' at line: 1038 or see '.nextflow.log' file for more details

logs are here

Sep-20 14:17:05.816 [Actor Thread 38] DEBUG nextflow.file.SortFileCollector - FileCollector temp dir not removed: null
Sep-20 14:17:05.817 [main] ERROR nextflow.cli.Launcher - @unknown
nextflow.exception.IllegalDirectiveException: Unknown process directive: `validExitStatus`

It may be related to the following nextflow-io/nextflow#1564 which a Nextflow issue

[MustafaElshani]

This seem to have solved it c39867c

[xfk274280]

This seem to have solved it c39867c

don't work for me
Even when the PLEK.PY script runs successfully, it still returns sys.exit(1). I have commented out the script in the Docker image and the execution was successful.

           # statistics
            Total_count=0
            Noncoding_count=0
            for line in open(_options.prefix, 'r'):
                    Total_count=Total_count+1
                    #if line.find("Non-coding")>=0:                 
                    if re.compile(r'^Non-coding').match(line):
                            Noncoding_count=Noncoding_count+1
            print(' Coding: {0}/{1}={2}%, Non-coding: {3}/{4}={5}%'.format(
                    Total_count-Noncoding_count, Total_count, 1.0*(Total_count-Noncoding_count)/Total_count*100, 
                    Noncoding_count, Total_count, 1.0*(Noncoding_count)/Total_count*100))
            
            
            print('success')
            #sys.exit(1)