createcpgregions mode for cpg input files needed

[avilella]

Would it be possible to include the necessary code/binaries in the methylQA repo that would allow one to create the cpg.bed and genome.chrsizes.tsv input files needed to run methylqa bismark mode? Something like:

methylqa createcpgregions reference.fa

which would output:

reference.cpg.bed
reference.chrsizes.tsv

I know it's been mentioned that it uses code from the jkent library, so it would be good to have all this in the methylqa repo, so that from a methylqa git clone, one can create the input files needed for methylqa bismark using the methylqa repo exclusively.

[lidaof]

Good idea....should be not that difficult. I'll look into it. Thanks for suggestions.