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<title>Xuyang Li (李旭洋)</title>
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<h1>Xuyang Li</h1>
<p>Johns Hopkins University</p>
<h3><p class="view"><a href="https://li-xuyang28.github.io/">Home←</a></p></h3>
<h3><p class="view"><a href="https://li-xuyang28.github.io/cv.html">CV</a></p></h3>
<h3><p class="view"><a href="https://li-xuyang28.github.io/publications.html">Publications</a></p></h3>
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<h3><p class="view"><a href="https://li-xuyang28.github.io/notes.html">Notes</a></p></h3>
<h3><p class="view"><a href="https://li-xuyang28.github.io/personal.html">Personal</a></p></h3>
<p class="view"><b>Social</b><br>
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<p class="view"><b>Contact</b><br>
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<!--<p><b>Contact:</b><br>Beth Israel Deaconess Medical Center<br>Harvard Medical School<br>CLS 707, 3 Blackfan Circle<br>Boston, MA 02115<br>li.xuya[AT]northeastern.edu</p>-->
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<h3>
<img src="face.jpg" height="150" width="150"></h3>
<p>I am a PhD student in Biomedical Engineering at Johns Hopkins University. I earned my undergraduate degree from Northeastern University, double majoring in <a href="http://catalog.northeastern.edu/undergraduate/science/mathematics/"><b>mathematics</b></a> and the <a href="http://catalog.northeastern.edu/undergraduate/computer-information-science/computer-information-science-combined-majors/data-science-biochemistry-bs/#text">combined major of <b>data science and biochemistry</b></a> with a minor in physics. I am broadly interested in real algebraic geometry and its application, namely <b>algebraic statistics</b> (i.e. algebraic representation of graphical models). I am also interested in <b>computational biology</b>, such as analysis of scRNA/TCR/BCR/ATAC/...seq, with an emphasis on immunology. I am particularly interested in <b>causal inference</b> and discovery with help of prior knowledge. My honors undergraduate thesis in CS focuses on applying methods from commutative algebra in score based causal structure learning, and my honors undergraduate thesis in math focuses on algebraic modelings of DNA sequences and DNA motifs, by studying the polytope of word distributions.</p>
<p>My CS thesis work is supervised by <a href="https://www.khoury.northeastern.edu/people/olga-vitek/">Prof. Olga Vitek</a>, and I closely work with <a href="https://www.khoury.northeastern.edu/people/sara-mohammad-taheri/"> Sara Taheri</a>. An important mentor to me in mathematics, and academics in general, is <a href="https://cos.northeastern.edu/people/anthony-iarrobino/"> Prof. Anthony Iarrobino</a>; I organized a virtual reading group during the pandemic in algebraic statistics with his help. My math thesis work is supervised by <a href="https://hderksen.sites.northeastern.edu/"> Prof. Harm Derksen</a>, with Profs. Iarrobino and <a href="https://copos.sites.northeastern.edu/research/">Calina Copos</a> on the committee.</p>
<h2><br>News<br></h2>
<p>[2022.5] <b>I graduated Summa Cum Laude from Northeastern University and won the Undergraduate Research Award (awarded to one graduating senior for a significant research impact).</b></p>
<p>[2022.4] I succesfully defended my Honors in the Discipline Thesis (Mathematics) (title: Algebra of DNA Sequences; advisor: <a href="https://hderksen.sites.northeastern.edu/#_ga=2.157580090.1090202772.1654383673-2051692898.1654383673">Prof. Derksen.</a>). </p>
<p>[2021.12] I succesfully defended my Honors in the Discipline Thesis (CS) (title: Algebraic Approach to Scalable Prior-Informed Causal Structure Learning; advisor: <a href="https://www.khoury.northeastern.edu/people/olga-vitek/">Prof. Vitek.</a>). </p>
<p>[2021.12] Co-author paper accepted to <em>Biological Psychiatry</em> </p>
<p>[2021.5] I joined Center for Genomic Medicine@MGH as RA with $7,500 research fellowship under supervision of <a href="https://www.theleelab.com/">Dr. Lee</a> at MGH/HMS/Broad.</p>
<p>[2021.1] Co-author paper accepted to ICASSP 2021, first ever actual publication!</p>
<p>[2020.7] I joined Oncology Translational Genomics Team@Takeda as full time co-op for the next six months.</p>
<p>[2020.5] I won 2020 Wolfgang Goetzinger-Amgen Memorial Award.</p>
<p>[2020.4] I received $4,000 stipend to join NSMRP REU under supervision of Lei Yang.</p>
<p>[2018.7] I joined NUin Australia at Swinburne Institute of Technology in Melbourne.</p>
<p>[2018.6] <b>I graduated from Rutgers Preparatory School. </b></p>
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