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Possibility to use hickit for bulk Hi-C modelling? #29

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TerezaClarence opened this issue Oct 7, 2021 · 1 comment
Open

Possibility to use hickit for bulk Hi-C modelling? #29

TerezaClarence opened this issue Oct 7, 2021 · 1 comment

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@TerezaClarence
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Dear developers,

thank you for creating such an exciting modelling tool. I was wondering whether it would be possible to somehow use hickit for modelling of bulk whole genome Hi-C, given for instance the HiC-Pro output files (matrix and bed)?

Thank you very much in advance.
@tanlongzhi
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Dear Tereza,

Thank you very much for your kind words. Unfortunately, this repo cannot yet model from bulk Hi-C data. Other labs (such as Bin Zhang at MIT) work on modeling bulk Hi-C data.

Best,
Tan

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@tanlongzhi @TerezaClarence