nlmixr2/_pkgdown.yml at main · leovuong/nlmixr2 · GitHub

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url: https://nlmixr2.github.io/nlmixr2
template:
  bootstrap: 5
  params:
    bootswatch: flatly
reference:
- title: Running/Parsing `nlmixr2` model
  contents:
  - nlmixr2
- title: Estimation options
  contents:
  - foceiControl
  - saemControl
  - nlmeControl
  - bobyqaControl
  - lbfgsb3cControl
  - n1qn1Control
  - newuoaControl
  - nlmControl
  - nlminbControl
  - nlsControl
  - optimControl
  - uobyqaControl
  - tableControl
- title: Post-fit table functions
  contents:
  - addNpde
  - addCwres
  - addTable
- title: Utility functions for nlmixr2 fits
  contents:
  - bootplot
  - bootstrapFit
  - preconditionFit
  - profileFixed
  - profileFixedSingle
  - profileLlp
  - setOfv
  - traceplot
  - vpcCens
  - vpcCensTad
  - vpcPlot
  - vpcPlotTad
  - vpcSim
- title: Installation support
  contents:
  - nlmixr2CheckInstall
navbar:
  left:
  - text: Articles
    icon: fas fa-book
    menu:
        - text: "--------------------------"
        - text: "Getting started"
        - text: "Introduction to Running Nlmixr"
          href: articles/running_nlmixr.html
        - text: "Using Multiple Endpoints in Nlmixr"
          href: articles/multiple-endpoints.html
        - text: "--------------------------"
        - text: "Going further"
        - text: "Model Piping"
          href: articles/modelPiping.html
        - text: "Sweeping models to tidy datasets (broom)"
          href: articles/broom.html
        - text: "Censoring in nlmixr2 (M3 and others)"
          href: articles/censoring.html
        - text: "--------------------------"
        - text: "Integrated development with xgxr/nlmixr/ggPMX"
          href: articles/xgxr-nlmixr-ggpmx.html
        - text: "--------------------------"
        - text: "Citations of nlmixr2"
          href: articles/citations.html
        - text: "Who we are"
          href: articles/nlmixr2-team-and-advisory-committee.html
  - text: Example models
    icon: fas fa-chalkboard-teacher
    menu:
        - text: "Phenobarbatol with correlations"
          href: articles/addingCovariances.html
        - text: "--------------------------"
        - text: "Nonlinear PK/PD -- Nimotuzumab"
          href: articles/nimo.html
        - text: "PBPK -- Mavoglurant"
          href: articles/mavoglurant.html
        - text: "PKPD -- Myelosuppression model"
          href: articles/wbc.html
  - text: "Cheat Sheet"
    icon: fa-scroll fa-lg
    href: https://github.com/nlmixr2/nlmixr2/raw/main/CheatSheet_nlmixr_220621.pdf
  - text: "Tutorial"
    icon: fas fa-life-ring
    href: https://doi.org/10.1002/psp4.12445
  - text: "Functions"
    icon: fa-file-code-o fa-lg
    href: reference/index.html
  right:
  - icon: fa-github fa-lg
    href: https://github.com/nlmixr2/nlmixr2
  - icon: fa-download
    href: https://github.com/nlmixr2/nlmixr2/releases