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Error running pybnf job on SLURM cluster #295

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OleksiiR opened this issue Jul 15, 2020 · 0 comments
Open

Error running pybnf job on SLURM cluster #295

OleksiiR opened this issue Jul 15, 2020 · 0 comments

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@OleksiiR
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Hello!

I have a problem running pybnf job on SLURM cluster. Please help. I have tried to run it both using "-t slurm" option and without this option. The case was running without problems on the local machine, but failed to run on cluster. I attach log files for both runs.

Python version used: 3.7.4
BioNetGen version used: 2.4
cluster used: UCD Sonic (https://www.ucd.ie/itservices/ourservices/researchit/computeclusters/sonicuserguide/)
pybnf version used: 1.1.1
pybnf was installed using command "pip3 install pybnf --user", no errors in dependencies were found by pip3.

bnf_noslurm.log
bnf_slurm.log

Kind regards,
Oleksii

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