CellID,Background,Transform,Metric,Mask,CD3,CD45,CD8,...
1,none,raw,mean,cell,...
1,rollball,raw,mean,cell,...
1,none,log,mean,cell,...
1,none,log,gini,cell,...
1,none,log,gini,nuclei,...
This will produce multiple rows for each cell but preserve direct matching of column names against markers.csv. To avoid unnecessary duplication of morphological features, they can be written to a separate file.
Allow MCquant to write
.csvfiles in "long" format, which can capture multiple masks, metrics, background subtraction methods, etc.:This will produce multiple rows for each cell but preserve direct matching of column names against
markers.csv. To avoid unnecessary duplication of morphological features, they can be written to a separate file.