Removed unnecessary dependency definitions

Examples/WSExampleSimulations.py

@@ -202,7 +202,7 @@
 #%% Plot an example timeseries (takes long)
 for trl in range(waveData.get_data("SimulatedData").shape[0]):
     ani = Plotting.animate_grid_data(waveData, DataBucketName="SimulatedData", dataInd=trl, probepositions=[(0,15), (5,15), (10,15), (15,15), (19,15), (19,15)])
-    plot_file = output_path + "/SimulationAnimation_{trl}.gif"
+    plot_file = output_path + f"/SimulationAnimation_{trl}.gif"
     ani.save(plot_file)
 
 

README.md

@@ -1,4 +1,4 @@
-# WaveSpace version 1.1.7
+# WaveSpace version 1.1.8
 WaveSpace is a Python toolbox for simulating, detecting, and analyzing spatiotemporal traveling waves in neural sensor array data. It provides  tools for generating synthetic datasets, and applying a range of wave analysis techniques such as optical flow, 2D FFT, circular-linear correlation and singular value decomposition. In addition, it contains pipelines to decompose multi-dimensional timeseries data into its frequency components to derive robust phase estimates. WaveSpace’s WaveData class provides a structured approach to managing complex datasets, while its plotting helpers facilitate intuitive visualization of spatiotemporal patterns.
 
 ## Documentation
@@ -10,7 +10,7 @@ Download latest version from [here](https://github.com/kpetras/WaveSpace/tree/ma
 
 Open a terminal, navigate to the directory you downloaded to and install with
 ```
-pip install WaveSpace-1.1.7-py3-none-any.whl
+pip install WaveSpace-1.1.8-py3-none-any.whl
 ```
 
 ## Testing

WaveSpace/Decomposition/__init__.py

@@ -2,6 +2,6 @@
 from . import FFT
 from . import GenPhase 
 from . import Hilbert
-from . import MEMD_Matlab_translation
+#from . import MEMD_Matlab_translation
 from . import Morlet
 

package/WaveSpace.egg-info/PKG-INFO

@@ -1,31 +1,30 @@
 Metadata-Version: 2.2
 Name: WaveSpace
-Version: 1.1.7
+Version: 1.1.8
 Summary: A Python package for the analysis of cortical traveling waves
 Home-page: https://github.com/kpetras/WaveSpace
 Author: Kirsten Petras
-Author-email: kerschden[at]gmail.com
+Author-email: kirsten.petras[at]u-paris.fr
 License: GNU General Public License
 Classifier: Development Status :: 4 - beta
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Operating System :: OS Independent
-Requires-Python: >=3.9, <3.10
+Requires-Python: >=3.9
 Description-Content-Type: text/markdown
-Requires-Dist: numpy>=1.26.4
-Requires-Dist: matplotlib>=3.9.2
-Requires-Dist: scipy>=1.13.1
-Requires-Dist: plotly>=5.24.1
-Requires-Dist: pint>=0.24.4
-Requires-Dist: pyvista>=0.44.2
-Requires-Dist: chaospy>=4.3.19
-Requires-Dist: pandas>=2.2.3
-Requires-Dist: scikit-learn>=1.6.1
-Requires-Dist: scikit-image>=0.18.1
-Requires-Dist: tvb-gdist>=2.2.1
-Requires-Dist: emd>=0.8.0
-Requires-Dist: mne>=1.8.0
+Requires-Dist: numpy
+Requires-Dist: matplotlib
+Requires-Dist: scipy
+Requires-Dist: plotly
+Requires-Dist: pint
+Requires-Dist: pyvista
+Requires-Dist: pandas
+Requires-Dist: scikit-learn
+Requires-Dist: scikit-image
+Requires-Dist: tvb-gdist
+Requires-Dist: emd
+Requires-Dist: mne
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier

package/WaveSpace.egg-info/requires.txt

@@ -1,13 +1,12 @@
-numpy>=1.26.4
-matplotlib>=3.9.2
-scipy>=1.13.1
-plotly>=5.24.1
-pint>=0.24.4
-pyvista>=0.44.2
-chaospy>=4.3.19
-pandas>=2.2.3
-scikit-learn>=1.6.1
-scikit-image>=0.18.1
-tvb-gdist>=2.2.1
-emd>=0.8.0
-mne>=1.8.0
+numpy
+matplotlib
+scipy
+plotly
+pint
+pyvista
+pandas
+scikit-learn
+scikit-image
+tvb-gdist
+emd
+mne

package/setup.py

@@ -5,7 +5,7 @@
 
 setup(
     name='WaveSpace',
-    version='1.1.7',
+    version='1.1.8',
     description='A Python package for the analysis of cortical traveling waves',
     package_dir={'': '../'},
     packages=find_packages(where='../'),
@@ -22,20 +22,19 @@
         'Programming Language :: Python :: 3.9',
         'Operating System :: OS Independent',
     ],
-    python_requires='>=3.9, <3.10',
+    python_requires='>=3.9',
     install_requires=[
-        "numpy>=1.26.4",
-        "matplotlib>=3.9.2",
-        "scipy>=1.13.1",
-        "plotly>=5.24.1",
-        "pint>=0.24.4",
-        "pyvista>=0.44.2",
-        "chaospy>=4.3.19",
-        "pandas>=2.2.3",
-        "scikit-learn>=1.6.1",
-        "scikit-image>=0.18.1",
-        "tvb-gdist>=2.2.1",
-        "emd>=0.8.0",
-        "mne>=1.8.0"
+        "numpy",
+        "matplotlib",
+        "scipy",
+        "plotly",
+        "pint",
+        "pyvista",
+        "pandas",
+        "scikit-learn",
+        "scikit-image",
+        "tvb-gdist",
+        "emd",
+        "mne"
       ]
 )