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Test predictions are not available for a subset of models in Kipoi #238

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haimasree opened this issue Mar 12, 2021 · 1 comment
Open
9 of 12 tasks

Test predictions are not available for a subset of models in Kipoi #238

haimasree opened this issue Mar 12, 2021 · 1 comment
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enhancement

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@haimasree
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haimasree commented Mar 12, 2021 •
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kipoi test <model-name> --source=kipoi tests whether a specific conda environment can be resolved for model-name. In addition, for models whose yaml representation contains a test tag the corresponding file under expected is downloaded and verified against the predictions produced by the model. This is rather useful because changing versions of some dependencies could creep in numerical errors that are hard to detect. The following model groups dont contain such test files.

  • AttentiveChrome
  • BPNet-OSKN
  • Basenji
  • DeepMEL
  • FactorNet
  • Framepool
  • MMSplice
  • MPRA-DragoNN
  • SeqVec
  • Xpresso (we will wait until kipoiseq has a suitable dataloader)
  • deepTarget
  • extended_coda
@haimasree haimasree assigned haimasree and unassigned haimasree Mar 12, 2021
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#310
#312

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