Update kb_SPAdesImpl.py #31
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| name: Run KBase SDK Tests | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download kb-sdk, set up path, and modify kb-sdk helper script | |
| run: | | |
| mkdir -p $(pwd)/bin | |
| docker run ghcr.io/kbase/kb_sdk_patch-develop:br-0.0.4 genscript > $(pwd)/bin/kb-sdk | |
| docker tag ghcr.io/kbase/kb_sdk_patch-develop:br-0.0.4 kbase/kb-sdk:latest | |
| chmod 755 $(pwd)/bin/kb-sdk | |
| echo "$(pwd)/bin" >> $GITHUB_PATH | |
| sed -i 's/docker run -it/docker run /g' $(pwd)/bin/kb-sdk | |
| - name: Setup KBase SDK Tests and inject kbase token | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| run: | | |
| kb-sdk test || true | |
| mkdir -p ./test_local | |
| sed -i "s/^test_token=.*$/test_token=$KBASE_TEST_TOKEN/g" ./test_local/test.cfg | |
| continue-on-error: true | |
| - name: Run KBase SDK Tests | |
| run: kb-sdk test |