From 047c5a0313db82576b6b3054b2b063981041b718 Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 16:48:40 -0500 Subject: [PATCH 1/5] Update spec.json --- ui/narrative/methods/annotate_contigset/spec.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ui/narrative/methods/annotate_contigset/spec.json b/ui/narrative/methods/annotate_contigset/spec.json index 1279d53..e042a89 100644 --- a/ui/narrative/methods/annotate_contigset/spec.json +++ b/ui/narrative/methods/annotate_contigset/spec.json @@ -28,7 +28,7 @@ "dynamic_dropdown_options": { "data_source": "custom", "service_function": "taxonomy_re_api.search_species", - "service_version": "dev", + "service_version": "release", "service_params": [ { "search_text": "prefix:{{dynamic_dropdown_input}}", From 068cf6370e3d0ea22460ce2b988007057d97953f Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:09:43 -0500 Subject: [PATCH 2/5] Update spec.json --- ui/narrative/methods/annotate_genome_assembly/spec.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ui/narrative/methods/annotate_genome_assembly/spec.json b/ui/narrative/methods/annotate_genome_assembly/spec.json index 9afabd5..cb9b74c 100644 --- a/ui/narrative/methods/annotate_genome_assembly/spec.json +++ b/ui/narrative/methods/annotate_genome_assembly/spec.json @@ -59,7 +59,7 @@ "dynamic_dropdown_options": { "data_source": "custom", "service_function": "taxonomy_re_api.search_species", - "service_version": "dev", + "service_version": "release", "service_params": [ { "search_text": "prefix:{{dynamic_dropdown_input}}", From 4880ca4b8c4735d6c217d0aa30b16bf1004f79b0 Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:10:20 -0500 Subject: [PATCH 3/5] Update spec.json --- ui/narrative/methods/annotate_contigsets/spec.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ui/narrative/methods/annotate_contigsets/spec.json b/ui/narrative/methods/annotate_contigsets/spec.json index d524f5e..ef09407 100644 --- a/ui/narrative/methods/annotate_contigsets/spec.json +++ b/ui/narrative/methods/annotate_contigsets/spec.json @@ -39,7 +39,7 @@ "dynamic_dropdown_options": { "data_source": "custom", "service_function": "taxonomy_re_api.search_species", - "service_version": "dev", + "service_version": "release", "service_params": [ { "search_text": "prefix:{{dynamic_dropdown_input}}", From a8782b49411e4aa958b84a82c89771361cf90281 Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:17:26 -0500 Subject: [PATCH 4/5] Update kbase.yml --- kbase.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/kbase.yml b/kbase.yml index f211e67..efb90dd 100644 --- a/kbase.yml +++ b/kbase.yml @@ -10,7 +10,7 @@ service-language: perl module-version: - 0.1.9 + 0.1.10 owners: [chenry, scanon, olson, jjeffryes, umaganapathyswork, landml, gaprice, qzhang, ialarmedalien] From 402de37ab252002dd4a1ad9c2f4a96f3fab16b09 Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:18:32 -0500 Subject: [PATCH 5/5] Update RELEASE_NOTES.md --- RELEASE_NOTES.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md index 94d61d9..724dffa 100644 --- a/RELEASE_NOTES.md +++ b/RELEASE_NOTES.md @@ -1,6 +1,10 @@ ### OVERVIEW This module wraps the RAST annotation pipeline for KBase. +### Version 0.1.10 +__Changes__ +- Forcing usage of taxonomy_re_api widget in spec.json to use the "release" version instead of "dev". + ### Version 0.1.9 __Changes__ Made code improvements according to review comments on PR #81 by AJ. Also added error handling for bulk rasting to catch exception from gfu.save_one_genome call. Included the two apps annotate_genome_assembly and bulk_annotate_genomes_assemblies.