The type spec:
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typedef structure { |
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mol_id id; |
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string sequence; |
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string md5; |
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uniref_id uniref_id; |
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genome_ref genome_ref; |
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cds_id cds_id; |
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} ProteinData; |
The usage:
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for pp in ppb.build_peptides(structure): |
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pp_no += 1 |
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my_seq= pp.get_sequence() |
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pp_list += str(my_seq) |
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seq = ''.join(pp_list) |
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|
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data = { |
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'name': os.path.basename(file_path), |
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'num_chains': chain_no, |
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'num_residues': res_no, |
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'num_atoms': atom_no, |
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'protein': { |
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'id': os.path.basename(file_path), |
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'sequence': seq, |
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'md5': hashlib.md5(seq.encode()).hexdigest() |
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}, |
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} |
Where else can I open an issue for this?
The type spec:
ProteinStructureUtils/KBaseStructure.spec
Lines 49 to 56 in 0582b51
The usage:
ProteinStructureUtils/lib/ProteinStructureUtils/Utils/PDBUtils.py
Lines 66 to 82 in 0582b51
Where else can I open an issue for this?