Dependency Dashboard

[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
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Other Branches

The following updates are pending. To force the creation of a PR, click on a checkbox below.

• Update peter-evans/create-pull-request digest to 22a9089
• Update actions/checkout action to v4.4.0
• Update python Docker tag to v3.14.6
• Update zizmorcore/zizmor-action action to v0.6.1

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

• Update actions/checkout action to v5
• Update actions/checkout action to v6
• Update actions/checkout action to v7
• Update dependency datasets to v4
• Update dependency datasets to v5
• Update peter-evans/create-pull-request action to v8
• Click on this checkbox to rebase all open PRs at once

Detected Dependencies

github-actions (3)

.github/workflows/cd.yaml (3)

• actions/checkout v4.1.6@a5ac7e51b41094c92402da3b24376905380afc29 → [Updates: v4.4.0, v5.1.0, v6.1.0, v7.0.1]
• pdm-project/setup-pdm v4@94a823180e06fcde4ad29308721954a521c96ed0
• wntrblm/nox 2025.02.09@a74da2c766d4e656d6105639926c31f3aa4a6ca1

.github/workflows/ci.yaml (11)

• actions/checkout v4.1.7@692973e3d937129bcbf40652eb9f2f61becf3332 → [Updates: v4.4.0, v5.1.0, v6.1.0, v7.0.1]
• pdm-project/setup-pdm v4@94a823180e06fcde4ad29308721954a521c96ed0
• wntrblm/nox 2025.02.09@a74da2c766d4e656d6105639926c31f3aa4a6ca1
• actions/checkout v4.1.7@692973e3d937129bcbf40652eb9f2f61becf3332 → [Updates: v4.4.0, v5.1.0, v6.1.0, v7.0.1]
• pdm-project/setup-pdm v4@94a823180e06fcde4ad29308721954a521c96ed0
• wntrblm/nox 2025.02.09@a74da2c766d4e656d6105639926c31f3aa4a6ca1
• actions/checkout v4.1.7@692973e3d937129bcbf40652eb9f2f61becf3332 → [Updates: v4.4.0, v5.1.0, v6.1.0, v7.0.1]
• pdm-project/setup-pdm v4@94a823180e06fcde4ad29308721954a521c96ed0
• wntrblm/nox 2025.02.09@a74da2c766d4e656d6105639926c31f3aa4a6ca1
• actions/checkout v4.1.7@692973e3d937129bcbf40652eb9f2f61becf3332 → [Updates: v4.4.0, v5.1.0, v6.1.0, v7.0.1]
• zizmorcore/zizmor-action v0.2.0@e673c3917a1aef3c65c972347ed84ccd013ecda4 → [Updates: v0.6.1]

.github/workflows/release.yaml (4)

• actions/checkout v4.1.7@692973e3d937129bcbf40652eb9f2f61becf3332 → [Updates: v4.4.0, v5.1.0, v6.1.0, v7.0.1]
• pdm-project/setup-pdm v4@94a823180e06fcde4ad29308721954a521c96ed0
• wntrblm/nox 2025.02.09@a74da2c766d4e656d6105639926c31f3aa4a6ca1
• peter-evans/create-pull-request v7@271a8d0340265f705b14b6d32b9829c1cb33d45e → [Updates: v8, v7]

pep621 (1)

pyproject.toml (91)

• python >=3.10
• torch >=2.3.0
• lightning >=2.2.0
• jsonargparse >=4.30.0
• tensorboard >=2.16.2
• loguru >=0.7.2
• pandas >=2.0.0
• transformers >=4.38.2
• onnxruntime >=1.15.1
• onnx >=1.16.0
• toolz >=0.12.1
• rich >=13.7.1
• torchmetrics >=1.6.0
• nibabel >=3.2.2
• tenacity >=9.1.4
• pyzipper >=0.3.6
• requests >=2.33.1
• h5py >=3.10.0
• nibabel >=4.0.1
• opencv-python-headless >=4.9.0.80
• timm >=1.0.9
• torchvision >=0.17.0
• openslide-python >=1.3.1
• gdown >=5.2.0
• scikit-image >=0.24.0
• imagesize >=1.4.1
• scipy >=1.14.0
• monai >=1.3.2
• einops >=0.8.1
• medmnist >=3.0.2
• datasets <4.0.0,>=2.19.0 → [Updates: <4.9.0,>=4.8.5, <5.1.0,>=5.0.0]
• litellm >=1.61.8
• backoff >=2.2.1
• json-repair >=0.52.0
• litellm >=1.61.8
• backoff >=2.2.1
• json-repair >=0.52.0
• h5py >=3.10.0
• nibabel >=4.0.1
• opencv-python-headless >=4.9.0.80
• timm >=1.0.9
• torchvision >=0.17.0
• openslide-python >=1.3.1
• gdown >=5.2.0
• scikit-image >=0.24.0
• imagesize >=1.4.1
• scipy >=1.14.0
• monai >=1.3.2
• einops >=0.8.1
• datasets <4.0.0,>=2.19.0 → [Updates: <4.9.0,>=4.8.5, <5.1.0,>=5.0.0]
• litellm >=1.61.8
• backoff >=2.2.1
• json-repair >=0.52.0
• medmnist >=3.0.2
• isort >=5.12.0
• black >=23.1.0
• ruff >=0.0.254
• yamllint >=1.29.0
• bandit >=1.7.6
• pyright >=1.1.295
• pytest >=7.2.2
• nox >=2024.3.2
• pygments >=2.14.0
• pytest >=7.2.2
• pytest-cov >=4.1.0
• mkdocs >=1.5.3
• mkdocs-material >=9.5.6
• mkdocstrings >=0.24.0
• mike >=2.0.0
• setuptools >=62.3.3
• markdown-exec >=0.7.0
• mkdocs-redirects >=1.2.0
• mkdocs-version-annotations >=1.0.0
• isort >=5.12.0
• black >=23.1.0
• ruff >=0.0.254
• yamllint >=1.29.0
• bandit >=1.7.6
• pyright >=1.1.295
• nox >=2024.3.2
• pygments >=2.14.0
• pytest >=7.2.2
• pytest-cov >=4.1.0
• mkdocs >=1.5.3
• mkdocs-material >=9.5.6
• mkdocstrings >=0.24.0
• mike >=2.0.0
• setuptools >=62.3.3
• markdown-exec >=0.7.0
• mkdocs-redirects >=1.2.0
• mkdocs-version-annotations >=1.0.0

pyenv (1)

.python-version (1)

• python 3.12.8 → [Updates: 3.14.6]

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