added script templates

Author: jorvis

Diff for: script_template.pl

@@ -0,0 +1,122 @@
+#!/usr/bin/env perl
+
+=head1 NAME
+
+template.pl - you should put a one-line description of your script here
+
+=head1 SYNOPSIS
+
+USAGE: template.pl 
+            --some_argument=/path/to/some_file.fsa 
+            --another_argument=/path/to/somedir
+          [ --optional_argument=/path/to/somefile.list 
+            --optional_argument2=1000
+          ]
+
+=head1 OPTIONS
+
+B<--some_argument,-i>
+    here you'll put a longer description of this argument that can span multiple lines. in 
+    this example, the script has a long option and a short '-i' alternative usage.
+
+B<--another_argument,-o>
+    here's another named required argument.  please try to make your argument names all
+    lower-case with underscores separating multi-word arguments.
+
+B<--optional_argument,-s>
+    optional.  you should preface any long description of optional arguments with the
+    optional word as I did in this description.  you shouldn't use 'optional' in the
+    actual argument name like I did in this example, it was just to indicate that
+    optional arguments in the SYNOPSIS should go between the [ ] symbols.
+
+B<--optional_argument2,-f>
+    optional.  if your optional argument has a default value, you should indicate it
+    somewhere in this description.   ( default = foo )
+
+B<--log,-l> 
+    Log file
+
+B<--help,-h>
+    This help message
+
+=head1  DESCRIPTION
+
+put a longer overview of your script here.
+
+=head1  INPUT
+
+the input expectations of your script should be here.  pasting in examples of file format
+expected is encouraged.
+
+=head1  OUTPUT
+
+the output format of your script should be here.  if your script manipulates a database,
+you should document which tables and columns are affected.
+
+=head1  CONTACT
+
+    Your Name
+    [email protected]
+
+=cut
+
+use warnings;
+use strict;
+use Getopt::Long qw(:config no_ignore_case no_auto_abbrev pass_through);
+use Pod::Usage;
+
+my %options = ();
+my $results = GetOptions (\%options, 
+                          'some_argument|i=s',
+                          'another_argument|o=s',
+                          'optional_argument|s=s',
+                          'optional_argument2|f=s',
+                          'log|l=s',
+                          'help|h') || pod2usage();
+
+## display documentation
+if( $options{'help'} ){
+    pod2usage( {-exitval => 0, -verbose => 2, -output => \*STDERR} );
+}
+
+## make sure everything passed was peachy
+&check_parameters(\%options);
+
+## open the log if requested
+my $logfh;
+if (defined $options{log}) {
+    open($logfh, ">$options{log}") || die "can't create log file: $!";
+}
+
+##
+## CODE HERE
+##
+
+exit(0);
+
+
+sub _log {
+    my $msg = shift;
+
+    print $logfh "$msg\n" if $logfh;
+}
+
+
+sub check_parameters {
+    my $options = shift;
+    
+    ## make sure required arguments were passed
+    my @required = qw( some_argument another_argument );
+    for my $option ( @required ) {
+        unless  ( defined $$options{$option} ) {
+            die "--$option is a required option";
+        }
+    }
+    
+    ##
+    ## you can do other things here, such as checking that files exist, etc.
+    ##
+    
+    ## handle some defaults
+    $options{optional_argument2}   = 'foo'  unless ($options{optional_argument2});
+}

Diff for: script_template.py

@@ -0,0 +1,25 @@
+#!/usr/bin/env python3.2
+
+import argparse
+import os
+
+
+def main():
+    parser = argparse.ArgumentParser( description='Put a description of your script here')
+
+    ## output file to be written
+    parser.add_argument('-o', '--output_file', type=str, required=True, help='Path to an output file to be created' )
+    args = parser.parse_args()
+
+
+
+
+if __name__ == '__main__':
+    main()
+
+
+
+
+
+
+