INSTALL

# Basic installation:

perl Build.PL
./Build
./Build test
sudo ./Build install

# To install into a noncentral location (e.g., one's home directory):

perl Build.PL --install_base=/install/path
./Build
./Build test
./Build install

Note that the tests can take several minutes to run.

# Installing prerequisites, Ubuntu 13.04:

### Use the Ubuntu Software Center or "sudo apt-get install" to install the following packages:

 * perl
 * bioperl
 * libbatik-java
 * vcftools

### Use the CPAN shell to install the remaining required Perl modules:

    sudo cpan
    install CPAN
    reload cpan
    install JSON
    install Log::Log4perl
    install SVG
    install Text::CSV

### Manual test

/install/path/bin/circleator --config=conf/genes-percentGC-GCskew-1.cfg --data=data/NC_011969.gbk >fig1.svg
/install/path/bin/rasterize-svg fig1.svg png

You may wish to create aliases for these executables if they were not installed into a
system-wide bin/ directory.