diff --git a/src/smftools/informatics/bam_functions.py b/src/smftools/informatics/bam_functions.py index 17546df..677913a 100644 --- a/src/smftools/informatics/bam_functions.py +++ b/src/smftools/informatics/bam_functions.py @@ -1209,9 +1209,8 @@ def _match_barcode_to_references( Minimum required distance to the second-best match. If the gap between best and second-best distances is smaller, the match is rejected. padded_region : str, optional - Padded region with flanking context. If provided, uses padded scoring - (dorado-style) by aligning fixed-length barcode reference against the - variable-length padded region using HW (infix) alignment. + Padded region. If provided, aligns fixed-length barcode reference against the + variable-length padded region using HW semi-global alignment. Returns -------