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li<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title> Homepage of Dr. Suoqin Jin @ Wuhan University - Home</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="Dr. Suoqin Jin at the School of Mathematics and Statistics, Wuhan University">
<meta name="author" content="">
<!-- Le styles -->
<link href="css/bootstrap.min.css" rel="stylesheet">
<link href="css/bootstrap-responsive.min.css" rel="stylesheet">
<link href="css/theme.css" rel="stylesheet">
</head>
<body>
<div class="container">
<header class="jumbotron subhead" id="overview">
<p class="lead"> </p>
<h1> Homepage of Prof. Suoqin Jin @ Wuhan University </h1>
</header>
<div class="masthead">
<div class="navbar">
<div class="navbar-inner">
<div class="container">
<ul class="nav">
<li><a href="index.html">Home</a></li>
<li><a href="research.html">Research</a></li>
<!-- <li><a href="people.html">People</a></li> -->
<!-- <li><a href="publications.html">Publications</a></li> -->
<li class="active" ><a href="#">Publications</a></li>
<li><a href="resources.html">Resources</a></li>
<!-- <li><a href="jobs.html">Jobs</a></li> -->
<li><a href="contact.html">Contact</a></li>
</ul>
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</div>
</div>
</div>
<hr>
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<section id="published">
<div class="page-header">
<p> <font size="+0"> Please find the full publication list at <a href="https://scholar.google.com/citations?hl=en&user=PgGszgQAAAAJ&view_op=list_works"> Google Scholar</a>
<a href="https://www.researchgate.net/profile/Suoqin-Jin"> Research Gate</a>
</p>
</div>
<section>
<h3>Selected publications (# Equal-contribution; * Co-corresponding authors)</h3>
<br/>
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<a href="https://pubmed.ncbi.nlm.nih.gov/36440766/">scAB detects multiresolution cell states with clinical significance by integrating single-cell genomics and bulk sequencing data </a>
<p>Q Zhang, <b>S Jin</b><sup>*</sup>, X Zou<sup>*</sup>. </p>
<p><b><i>Nucleic Acids Res</i></b>, 50(21):12112-12130, 2022 </p>
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<a href="https://pubmed.ncbi.nlm.nih.gov/33597522/">Inference and analysis of cell-cell communication using CellChat </a>
<p><b>S Jin</b>, C Guerrero-Juarez, L Zhang, I Chang, R Ramos, CH Kuan, P Myung, M Plikus<sup>*</sup>, Q Nie<sup>*</sup>. </p>
<p><b><i>Nature Communications</i></b>, 12: 1088, 2021 </p>
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<a href="https://pubmed.ncbi.nlm.nih.gov/32014031/">scAI: an unsupervised approach for integrative analysis of parallel single cell transcriptomic and epigenomic profiles </a>
<h5> </h5>
<p><b>S Jin</b><sup>#</sup>, L Zhang<sup>#</sup>, Q Nie<sup>*</sup> </p>
<p> <b><i>Genome Biology</i></b>, 21(1)：25, 2020 </p>
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<hr>
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<a href="https://pubmed.ncbi.nlm.nih.gov/32187560/"> Defining epidermal basal cell states during skin homeostasis and wound healing using single-cell transcriptomics</a>
<p>D Haensel<sup>#</sup>, <b>S Jin</b><sup>#</sup>, R Cinco, P Sun, Q Nguyen, Z Cang, M Dragan, A MacLean, K Kessenbrock, E Gratton, Q Nie<sup>*</sup>, Xing Dai<sup>*</sup></p>
<p> <b><i>Cell Reports</i></b>, 30: 3932-3947, 2020 </p>
</div>
<hr>
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<a href="https://pubmed.ncbi.nlm.nih.gov/33116143/"> Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states </a>
<p>Z Lin, <b>S Jin</b>, J Chen, Z Li, Z Lin, L Tang, Q Nie<sup>*</sup>, B Andersen<sup>*</sup> </p>
<p> <b><i>Nature Communications</i></b>, 11(1): 5434, 2020</p>
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<a href="https://pubmed.ncbi.nlm.nih.gov/32132203/">Circadian clock control of Interferon-sensitive gene expression in murine skin</a>
<p>E Greenberg, M Marshall, <b>S Jin</b>, S Venkatesh, M Dragan, L Tsoi, J Gudjonsson, Q Nie, J Takahashi, B Andersen<sup>*</sup> </p>
<p> <b><i>Proc. Natl. Acad. Sci. U.S.A.</i></b> 117(11):5761- 5771, 2020</p>
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<hr>
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<a href="https://pubmed.ncbi.nlm.nih.gov/31548723/">CA1-projecting subiculum neurons facilitate object-place learning</a>
<p>Y Sun<sup>#</sup>, <b>S Jin</b><sup>#</sup>, X Lin, L Chen, X Qiao, L Jiang, P Zhou, K Johnston, P Golshani, Q Nie, T Holmes, D Nitz<sup>*</sup>, X Xu<sup>*</sup> </p>
<p> <b><i>Nature Neuroscience.</i></b> 22(11)：1857-1870, 2019</p>
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<hr>
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<a href="https://pubmed.ncbi.nlm.nih.gov/30737373/">Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds</a>
<p>C Guerrero-Juarez, P Dedhia, <b>S Jin</b>, R Ruiz-Vega, D Ma, Y Liu, K Yamaga, O Shestova, D Gay, Z Yang, K Kessenbrock, Q Nie, W Pear, G Cotsarelis<sup>*</sup>, and M Plikus<sup>*</sup> </p>
<p> <b><i>Nature Communications.</i></b> 10(1): 650, 2019</p>
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<div class="span12">
<a href="https://pubmed.ncbi.nlm.nih.gov/29415263/">scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data</a>
<p><b>S Jin</b>, A MacLean, T Peng, Q Nie<sup>*</sup> </p>
<p> <b><i>Bioinformatics.</i></b> 34(12): 2077-2086, 2018</p>
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<div class="span12">
<a href="https://epubs.siam.org/doi/10.1137/17M1116143">Trajectory control in nonlinear networked systems and its applications to complex biological systems</a>
<p><b>S Jin</b>, D Wang, X Zou<sup>*</sup> </p>
<p> <b><i>SIAM Journal on Applied Mathematics.</i></b> 78(1)：629–649, 2018</p>
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