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NA values in netVisual_bubble data slot #310

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samyuktha-suresh opened this issue Feb 8, 2025 · 0 comments
Open

NA values in netVisual_bubble data slot #310

samyuktha-suresh opened this issue Feb 8, 2025 · 0 comments

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@samyuktha-suresh
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samyuktha-suresh commented Feb 8, 2025

Hello!
I have a merged cellchat object with two conditions - young and middle age,

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and I was following the tutorial step "Identify dysfunctional signaling by using differential expression analysis". I noticed that sometimes there was an unlabeled column in the output bubbleplot. This seems to be due to some NA values appearing the in gg1$data column "source.target". Is there any reason for this interaction to be given an NA value. And if so, should this be dropped when plotting the bubbleplot?

Thanks a lot!

Sam

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