Error in draw_TimeHeatmap_enrichR

[tebbenk]

Hi - I am using draw_TimeHeatmap_enrichR and keep running into this error message:

Error in [.data.frame(sub.GO.mat, , c("Description", col.name.order)) :
undefined columns selected

I have run runTrendCatcher and my master.list object looks as expected.

This is my full command:
heatmap_enrichr_controls <- draw_TimeHeatmap_enrichR(
master.list = master.list_controls,
logFC.thres = 0,
top.n = 5,
dyn.gene.p.thres = 0.05,
dbs = "BioPlanet_2019",
term.width = 80,
OrgDb = "org.Hs.eg.db",
GO.enrich.p = 0.05,
)

Any ideas how I can go about fixing this?

[wangxinge]

Hi @tebbenk , thanks for using TrendCatcher. This error is more likely there is no GO enriched from your data. I suggest to View(draw_TimeHeatmap_enrichR) to see the original function, and run line by line from the code to check details.