Have 4 samples in ex.call object with large deviation and this is causing checkBdev to not run as expected even though the command says it is dropping those 4. Any suggestions here beyond removing those samples manually an re-running analysis?
ex.Bdev <- checkBdev(ex.call)
Processing the files in the LOY object
4 samples removed due to large LRR standard deviation values
Processing 427 file(s)...
Error in cl$class[cl$orig == cl$classBdev] <- cl$classBdev[cl$orig == :
NAs are not allowed in subscripted assignments
In addition: Warning message:
In stats::pt(-abs(t), df) : NaNs produced
Have 4 samples in ex.call object with large deviation and this is causing checkBdev to not run as expected even though the command says it is dropping those 4. Any suggestions here beyond removing those samples manually an re-running analysis?