Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

PDBDev should host all data files for fast access #67

Open
tomgoddard opened this issue Jul 26, 2018 · 0 comments
Open

PDBDev should host all data files for fast access #67

tomgoddard opened this issue Jul 26, 2018 · 0 comments
Labels
visualization

Comments

@tomgoddard
Copy link
Collaborator

Current PDBDev entries such as 0001 have auxiliary files referenced by a DOI (eg. 10.5281/zenodo.1218053) in this case hosted by Zenodo. The speed downloading that data is abysmal. Currently trying to open PDBDev_00000001.cif in ChimeraX has taken 5 minutes to read just 36 of 62 Mbytes on a fast UCSF connection. This is unusable. 62 Mbytes would download in seconds from the RCSB. The files referenced by PDBDev entries using DOIs should have copies hosted by RCSB to provide consistent high performance network access and the .cif files should reference the copies of those data files at RCSB.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
visualization
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@benmwebb @tomgoddard